Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034020.1

Orthogroup ID

OG0004602

Physical Location & Seq

Genomic Coordinates Forward (+)

26 .. 791

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034020.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 766 bp

atgcattctcaaatagcttccagattgtctcaagctgagaaatctatggagctggcgcgatgtagtcctataccaaatgatgtttctcgatcttcaaggtatgacatttgcagtgatgatgggatgagttcctccgaatcttgggctggtgcattactgtcagagttggaacattttagaagtgggaggcttaaaagtccacagcagcacaaagaaatggagatttcagacatgagcttaatggatgattttgttgagatggagaaattggcaatagtttctgcagatacacctcctaaaaatgcccataatcttcgttttaatggtaaggacctgggacgagttgaagttcaatctagcgtcagtgacataagaaagtacggcgagtccagagatgtagtacctgagagttcttttgactggcttcaggttgttttaaaagcaatgttggagcaaaagaatgtttcaaaacgaagtctagatgagctatttgaggacatcaaaattgctttgggttacctaaaacagccaaccaagcatgaggctagtaaaactgcagaatatcaagaggagtcactgtgtcttgctctaattgcttccacaaatgaaaacaaggttggtgataaattgcaagaagaaaacagcagattaaaaaatgaactgaagaatatggaatctgcaaagcaagaaatggaggctaggctacagtcagaaactgaaaagaatgtagcgttgatggtacaacttcaggaagcacagcaaagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

FPP

Protein Analysis

255

Amino Acids

28.82

Weight (kDa)

5.1

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19370 AT3G19370 AT3G19370
fragaria_vesca	FvH4_2g05731 FvH4_2g05731 FvH4_2g05731 FvH4_2g05731
malus_domestica	MD05G1084800.v1.1
prunus_persica	Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1
pyrus_communis	pycom05g08380
rosa_chinensis	RchiOBHm_Chr6g0256631
rosa_laevigata	RLG00000014748
rosa_multiflora	Rmu_co8155852.1_g000001 Rmu_sc0007004.1_g000002 Rmu_sc0034019.1_g000001 Rmu_sc0034020.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042850 Rroxscaffold_7G00209150
rosa_rugosa	Rorug05G0565100 Rorug05G0565200 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh6AG083000 Rh6BG077600 Rh6CG072200 Rh6DG069400
rosa_wichuraiana	Rw6G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AcuI	CTGAAG	3 cut(s)	410, 683, 731
AfaI	GTAC	3 cut(s)	380, 402, 741
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	96, 347, 353, 468
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	4 cut(s)	67, 99, 600, 632
AluBI	AGCT	5 cut(s)	17, 35, 52, 237, 487
AluI	AGCT	5 cut(s)	17, 35, 52, 237, 487
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	716
ApeKI	GCWGC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	113, 253, 730
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	4 cut(s)	357, 479, 546, 699
BfmI	CTRYAG	3 cut(s)	282, 555, 704
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	129, 250
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	27, 396
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	4
Bsp143I	GATC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	28, 397
BspFNI	CGCG	1 cut(s)	58
BspMAI	CTGCAG	2 cut(s)	286, 559
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	159, 579, 708
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	36, 405
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	129, 250
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	535, 593
BstNI	CCWGG	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	3 cut(s)	282, 555, 704
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	129, 250
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	118, 370, 575
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	379, 401, 740
CviAII	CATG	2 cut(s)	232, 539
CviQI	GTAC	3 cut(s)	379, 401, 740
DdeI	CTNAG	2 cut(s)	36, 405
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraI	TTTAAA	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	3 cut(s)	410, 683, 731
Eco91I	GGTNACC	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	235, 542
FaiI	YATR	8 cut(s)	47, 71, 102, 233, 309, 371, 540, 671
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	231, 538
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	2 cut(s)	136, 257
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	4 cut(s)	357, 479, 546, 699
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	206
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	235, 542
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	4 cut(s)	137, 386, 572, 674
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	136, 163, 229, 712
Hpy188III	TCNNGA	6 cut(s)	21, 87, 390, 479, 566, 749
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	3 cut(s)	159, 579, 708
HpyCH4V	TGCA	7 cut(s)	4, 111, 152, 284, 557, 631, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	535, 593
HpyF3I	CTNAG	2 cut(s)	36, 405
Hsp92II	CATG	2 cut(s)	235, 542
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	49, 451
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	357, 479, 546, 699
MaeIII	GTNAC	3 cut(s)	365, 515, 573
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	4 cut(s)	84, 305, 647, 676
MluCI	AATT	4 cut(s)	266, 504, 591, 626
MlyI	GAGTC	2 cut(s)	395, 581
MmeI	TCCRAC	2 cut(s)	147, 429
MnlI	CCTC	7 cut(s)	142, 180, 303, 487, 535, 562, 688
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	192, 239, 321, 437, 650
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	535, 593
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	235, 542
NmuCI	GTSAC	2 cut(s)	365, 573
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	137, 674
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	394, 580
PpsI	GAGTC	2 cut(s)	394, 580
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	286, 559
PstNI	CAGNNNCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	380, 402, 741
RsaNI	GTAC	3 cut(s)	379, 401, 740
SaqAI	TTAA	5 cut(s)	192, 239, 321, 437, 650
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	2 cut(s)	395, 581
ScrFI	CCNGG	1 cut(s)	335
SfcI	CTRYAG	3 cut(s)	282, 555, 704
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	266, 504, 591, 626
SspMI	CTAG	4 cut(s)	357, 479, 546, 699
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	159, 579, 708
TaqI	TCGA	1 cut(s)	88
TasI	AATT	4 cut(s)	266, 504, 591, 626
TfiI	GAWTC	2 cut(s)	137, 674
Tru1I	TTAA	5 cut(s)	192, 239, 321, 437, 650
Tru9I	TTAA	5 cut(s)	192, 239, 321, 437, 650
TscAI	CASTG	3 cut(s)	118, 370, 582
TseFI	GTSAC	2 cut(s)	365, 573
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	2 cut(s)	365, 573
TspDTI	ATGAA	2 cut(s)	621, 672
TspRI	CASTG	3 cut(s)	118, 370, 582
VpaK11BI	GGWCC	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	478
XspI	CTAG	4 cut(s)	357, 479, 546, 699
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.