Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004602

Physical Location & Seq

Genomic Coordinates Forward (+)

7304084 .. 7309865

Gene Structure 5782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG069400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGGAACAATTAATTCTTGTTCGGGAAGAACAGGAGCAAAGAATACATGATGCTGTTATGATGACATCGGGAGAGTATGAGAAATCTCAGAAAAAATTAGAAGCTAAGTTGCGAGAGACAAGTGAACAGGTTACAAACTTAGCTGTTGAAAATACGAATCTGACCAGGGCCCTTCGAGCAAAAGAGAAGTTGATGGAAGATTTACGTAGACAGAAGTCTCAAACAGATGCAGAATTTAGTGCACTAATGGCTAGACTGGATTCCACAGAAAAAGAAAATGCCTTCTTAAGATATGAATTTCACATGCTCGAGAAGGAACTCGAGATTCGTAGCGAGGAGATGGAGTACAACCGTCGGTCTGCTGAAGAATCTCACAAACAGCACTTGGAGAGTATGATGAGAATCACAGAGTTAGAACAAGAATGTCAAAGAGTTCATCTTCTTCTGCGAAAACGGCTGCCAGGTCCTGTTTCGATGACTATGAAGAATGAAGCTAAAATGATGGGGAGGGATCAGACAGAGATGAGAAGAAGGAAGCTTAATCCTACTAGAGATATGATCGTAAGAGATGCCAACATGGGAAACTCTCCTGAAATACCAAATAAGAATATGAGTCTCATGATTGAGCAGTTACGTAATATGGAAGAAGAAAACAAAGTTCTTAGAGATATTTTAACCAGGAAAAACTCTGAGCTCCTTTCTTCAAGGAACATGCATTCTCAAATAGCTTCCAGATTGTCTCAAGCTGAGAAATCTATGGAGCTGGCACGATGTAGTCCTATCCCAAATGATGTTTCTCGATCTTCAAGGTATGACGTTTGCAGTGATGATGGGATGAGTTCCTCCGAATCTTGGGCTGGTGCATTACTGTCAGAGTTGGAACATTTTAGAAGTGGGAGGCTTAAAAGTCCACAGCAGCACAAAGAAATGGAGATTTCAGACATGAGCTTAATGGATGATTTTGTTGAGATGGAGAAATTGGCAATAGTTTCTGCAGATACACCTCCTAAAAATGCCCATAATCTTCGTTTTAATGGTAAGGACCTGGGACGAGTTGAAGTTCAATCTCGCGTCAGTGACATAAGAAAGTACGGCGAGTCCAGAGATGTAGTACCTGAGAGTTCTTTTGACTGGCTTCAGGTTGTTTTAAAAGCAATGTTGGAGCAAAAGAATGTTTCAAAACGAAGTCTAGATGAGCTATTTGAGGACATCAAAATTGCTTTGGGTTACCTAAAACAGCCAACCAAGCATGAGGCTAGTAAAACTGCAGAATATCAAGAGGAGTCACTGTGTCTTGCTCTAGTTGCTTCCTCAAATGAAAGCAAGGTTGGTGATAAATTGCAAGAAGAAAACAGCAGATTAAAAAATGAACTGAAGAATATGGAATCTGCAAAGAAAGAAATGGAAGCTAGGCTACAGTCAGAAACTGAAAAGAATGAAGCGTTGATGGTACAACTTCAGGAATCACAGCAAAGCCTTGGAACCTTACAAACAGAACTGGAGAGTCTGAGAGAAGCGGAGAAGATGATAGAAGACCAGCTCGAAAATCAGAAGTCGATTAATGAAGATCTCGATACCCAGCTGACTATTGCCAAAGCAAAGTTAAATGAAGTCTTCCAGAAGTTCTCGTCTTTAGAAGTGGAATTGGAGGATAAACATAACTGTTTTGAAGAATTAGAAGCAACATGTCTTGAGCTCCAACTCCAGCAAGAAAGTGCTGCAAAGACGGAAACTCCAGAGTATGGCATAAGCAAAGAGGAAAAACAGTCCCAACCTGGATGGGAAATCACAACAGCTTCAGTGAAGTTGGCAGAGTGCCAAGAAACCATCCTAAACTTGGGAAAACAGCTGAAGGCACTAGCTACACCAAGAGAAGCAGCACTGTTTGACAAGGTGTTCTCGACCACCAGTGCTGCAGCCAACACCAAGCGCTCTTCCCTACGTGATCGAATGCTAGCTGATGAAGATCCCAGAGCAGAGGTTCTGAAGTCTCCAAAAGATAAACAAGCAATGAGGGATGCAGATGCACAGAAACCATCCCTTCTTCACTCTGATAGTCATAACGCATTGCCCACTCCTAGTGCTCTGGTAAATACGCGGCAAGGTCATTTTGGTTCAAAGCATCTGGCTATTGTGCCGAGTAAGAAACAGGGAGGTTTTGGTTTTCTAAGGAGGCTACTGCTGAGGAGGAAGAAAGGAAGCAGCAAGAAACCCCAAACCTTGGCCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

FPP

Protein Analysis

744

Amino Acids

85.1

Weight (kDa)

5.95

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	1 - 425	3.9e-130	Filament-like plant protein, long coiled-coil
FPP	PF05911	417 - 627	2.4e-54	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19370 AT3G19370 AT3G19370
fragaria_vesca	FvH4_2g05731 FvH4_2g05731 FvH4_2g05731 FvH4_2g05731
malus_domestica	MD05G1084800.v1.1
prunus_persica	Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1 Prupe.8G129200_v2.0.a1
pyrus_communis	pycom05g08380
rosa_chinensis	RchiOBHm_Chr6g0256631
rosa_laevigata	RLG00000014748
rosa_multiflora	Rmu_co8155852.1_g000001 Rmu_sc0007004.1_g000002 Rmu_sc0034019.1_g000001 Rmu_sc0034020.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042850 Rroxscaffold_7G00209150
rosa_rugosa	Rorug05G0565100 Rorug05G0565200 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh6AG083000 Rh6BG077600 Rh6CG072200 Rh6DG069400
rosa_wichuraiana	Rw6G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1742, 2221
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	2 cut(s)	1071, 2098
AciI	CCGC	2 cut(s)	1517, 2098
AclWI	GGATC	2 cut(s)	519, 1961
AcoI	YGGCCR	1 cut(s)	2223
AcsI	RAATTY	2 cut(s)	233, 296
AcuI	CTGAAG	7 cut(s)	384, 1121, 1394, 1442, 1782, 1871, 2006
AfaI	GTAC	4 cut(s)	347, 1091, 1113, 1452
AfeI	AGCGCT	1 cut(s)	1931
AfiI	CCNNNNNNNGG	4 cut(s)	852, 1742, 1837, 2221
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	1685
AgsI	TTSAA	8 cut(s)	149, 705, 807, 1058, 1064, 1179, 1670, 2118
AjnI	CCWGG	5 cut(s)	164, 460, 677, 1044, 1774
AjuI	GAANNNNNNNTTGG	4 cut(s)	778, 810, 1311, 1343
Alw21I	GWGCWC	4 cut(s)	244, 696, 1698, 2086
Alw26I	GTCTC	5 cut(s)	110, 222, 620, 744, 1995
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	519, 1961
AlwNI	CAGNNNCTG	2 cut(s)	467, 1427
Ama87I	CYCGRG	2 cut(s)	308, 320
Aor51HI	AGCGCT	1 cut(s)	1931
AoxI	GGCC	2 cut(s)	168, 2223
ApaI	GGGCCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	7 cut(s)	457, 916, 1718, 1877, 1913, 1916, 2202
ApoI	RAATTY	2 cut(s)	233, 296
AseI	ATTAAT	2 cut(s)	11, 1560
AspLEI	GCGC	1 cut(s)	1932
AspS9I	GGNCC	4 cut(s)	168, 169, 464, 1042
AsuHPI	GGTGA	1 cut(s)	1343
AsuNHI	GCTAGC	1 cut(s)	1954
AvaI	CYCGRG	2 cut(s)	308, 320
AvaII	GGWCC	2 cut(s)	464, 1042
BaeGI	GKGCMC	2 cut(s)	172, 244
BalI	TGGCCA	1 cut(s)	2225
BanII	GRGCYC	3 cut(s)	172, 696, 1698
BarI	GAAGNNNNNNTAC	2 cut(s)	1398, 1430
BbsI	GAAGAC	2 cut(s)	1539, 1606
Bbv12I	GWGCWC	4 cut(s)	244, 696, 1698, 2086
BbvCI	CCTCAGC	1 cut(s)	2183
BbvI	GCAGC	7 cut(s)	444, 928, 1705, 1889, 1900, 1928, 2214
BccI	CCATC	9 cut(s)	187, 334, 496, 824, 964, 1441, 1773, 1835, 2044
BceAI	ACGGC	2 cut(s)	470, 1108
BciT130I	CCWGG	5 cut(s)	166, 462, 679, 1046, 1776
BcoDI	GTCTC	5 cut(s)	110, 222, 620, 744, 1995
BfaI	CTAG	9 cut(s)	252, 549, 1190, 1257, 1301, 1410, 1859, 1955, 2079
BfmI	CTRYAG	4 cut(s)	993, 1266, 1415, 1914
BfoI	RGCGCY	1 cut(s)	1933
BfrI	CTTAAG	1 cut(s)	286
BglII	AGATCT	1 cut(s)	1567
BisI	GCNGC	8 cut(s)	458, 917, 1719, 1878, 1914, 1917, 2099, 2203
BlsI	GCNGC	8 cut(s)	459, 918, 1720, 1879, 1915, 1918, 2100, 2204
Bme1390I	CCNGG	5 cut(s)	166, 462, 679, 1046, 1776
Bme18I	GGWCC	2 cut(s)	464, 1042
BmeT110I	CYCGRG	2 cut(s)	308, 320
BmgT120I	GGNCC	4 cut(s)	168, 169, 464, 1042
BmiI	GGNNCC	2 cut(s)	170, 1483
BmrFI	CCNGG	5 cut(s)	166, 462, 679, 1046, 1776
BmsI	GCATC	6 cut(s)	40, 217, 559, 2008, 2014, 2131
BmtI	GCTAGC	1 cut(s)	1958
BoxI	GACNNNNGTC	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	1539, 1606
BpmI	CTGGAG	3 cut(s)	1520, 1688, 1719
Bpu10I	CCTNAGC	1 cut(s)	2183
BpuEI	CTTGAG	2 cut(s)	726, 1712
BsaAI	YACGTR	3 cut(s)	206, 635, 1943
BsaBI	GATNNNNATC	2 cut(s)	401, 1965
BsaJI	CCNNGG	4 cut(s)	165, 1045, 1477, 2220
BsaXI	ACNNNNNCTCC	6 cut(s)	329, 359, 1274, 1304, 1717, 1747
Bsc4I	CCNNNNNNNGG	4 cut(s)	852, 1742, 1837, 2221
Bse1I	ACTGG	4 cut(s)	261, 1136, 1503, 1908
Bse3DI	GCAATG	3 cut(s)	1161, 2016, 2066
Bse8I	GATNNNNATC	2 cut(s)	401, 1965
BseBI	CCWGG	5 cut(s)	166, 462, 679, 1046, 1776
BseDI	CCNNGG	4 cut(s)	165, 1045, 1477, 2220
BseGI	GGATG	6 cut(s)	840, 961, 1784, 1827, 2023, 2036
BseJI	GATNNNNATC	2 cut(s)	401, 1965
BseLI	CCNNNNNNNGG	4 cut(s)	852, 1742, 1837, 2221
BseMI	GCAATG	3 cut(s)	1161, 2016, 2066
BseMII	CTCAG	6 cut(s)	101, 681, 738, 1107, 1499, 2174
BseNI	ACTGG	4 cut(s)	261, 1136, 1503, 1908
BseRI	GAGGAG	3 cut(s)	350, 1295, 2200
BseSI	GKGCMC	2 cut(s)	172, 244
BseXI	GCAGC	7 cut(s)	444, 928, 1705, 1889, 1900, 1928, 2214
BseYI	CCCAGC	1 cut(s)	1578
Bsh1236I	CGCG	2 cut(s)	1071, 2098
BshFI	GGCC	2 cut(s)	170, 2225
BsiHKAI	GWGCWC	4 cut(s)	244, 696, 1698, 2086
BsiHKCI	CYCGRG	2 cut(s)	308, 320
BslFI	GGGAC	2 cut(s)	1062, 1753
BslI	CCNNNNNNNGG	4 cut(s)	852, 1742, 1837, 2221
BsmAI	GTCTC	5 cut(s)	110, 222, 620, 744, 1995
BsmFI	GGGAC	2 cut(s)	1062, 1753
BsmI	GAATGC	2 cut(s)	715, 1956
BsnI	GGCC	2 cut(s)	170, 2225
BsoBI	CYCGRG	2 cut(s)	308, 320
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	5 cut(s)	172, 244, 696, 1698, 2086
Bsp143I	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
BspACI	CCGC	2 cut(s)	1517, 2098
BspANI	GGCC	2 cut(s)	170, 2225
BspCNI	CTCAG	6 cut(s)	100, 682, 739, 1108, 1500, 2175
BspFNI	CGCG	2 cut(s)	1071, 2098
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	170, 1483
BspMAI	CTGCAG	3 cut(s)	997, 1270, 1918
BspOI	GCTAGC	1 cut(s)	1958
BspPI	GGATC	2 cut(s)	519, 1961
BspQI	GCTCTTC	1 cut(s)	1939
BspTI	CTTAAG	1 cut(s)	286
BsrDI	GCAATG	3 cut(s)	1161, 2016, 2066
BsrI	ACTGG	4 cut(s)	261, 1136, 1503, 1908
BssECI	CCNNGG	4 cut(s)	165, 1045, 1477, 2220
BssMI	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
BssT1I	CCWWGG	2 cut(s)	1477, 2220
Bst2UI	CCWGG	5 cut(s)	166, 462, 679, 1046, 1776
Bst4CI	ACNGT	7 cut(s)	353, 870, 1290, 1419, 1664, 1767, 1884
Bst6I	CTCTTC	1 cut(s)	1939
BstAFI	CTTAAG	1 cut(s)	286
BstBAI	YACGTR	3 cut(s)	206, 635, 1943
BstC8I	GCNNGC	2 cut(s)	765, 1956
BstEII	GGTNACC	1 cut(s)	1226
BstF5I	GGATG	6 cut(s)	840, 961, 1784, 1827, 2023, 2036
BstFNI	CGCG	2 cut(s)	1071, 2098
BstH2I	RGCGCY	1 cut(s)	1933
BstHHI	GCGC	1 cut(s)	1932
BstKTI	GATC	6 cut(s)	514, 561, 803, 1570, 1948, 1969
BstMAI	GTCTC	5 cut(s)	110, 222, 620, 744, 1995
BstMBI	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 248, 454, 1246, 1304
BstNI	CCWGG	5 cut(s)	166, 462, 679, 1046, 1776
BstNSI	RCATGY	3 cut(s)	307, 715, 1689
BstPAI	GACNNNNGTC	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	1226
BstSCI	CCNGG	5 cut(s)	164, 460, 677, 1044, 1774
BstSFI	CTRYAG	4 cut(s)	993, 1266, 1415, 1914
BstSLI	GKGCMC	2 cut(s)	172, 244
BstSNI	TACGTA	2 cut(s)	206, 635
BstUI	CGCG	2 cut(s)	1071, 2098
BstV1I	GCAGC	7 cut(s)	444, 928, 1705, 1889, 1900, 1928, 2214
BstV2I	GAAGAC	2 cut(s)	1539, 1606
BstX2I	RGATCY	2 cut(s)	1567, 1966
BstYI	RGATCY	2 cut(s)	1567, 1966
BsuRI	GGCC	2 cut(s)	170, 2225
BtsCI	GGATG	6 cut(s)	840, 961, 1784, 1827, 2023, 2036
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	6 cut(s)	829, 1081, 1286, 1806, 1880, 1915
Cac8I	GCNNGC	2 cut(s)	765, 1956
CaiI	CAGNNNCTG	2 cut(s)	467, 1427
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	1932
Cfr13I	GGNCC	4 cut(s)	168, 169, 464, 1042
CseI	GACGC	1 cut(s)	1060
Csp6I	GTAC	4 cut(s)	346, 1090, 1112, 1451
CviAII	CATG	8 cut(s)	47, 304, 577, 619, 712, 943, 1250, 1686
CviQI	GTAC	4 cut(s)	346, 1090, 1112, 1451
DpnI	GATC	6 cut(s)	513, 560, 802, 1569, 1947, 1968
DpnII	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
DraI	TTTAAA	1 cut(s)	1149
EaeI	YGGCCR	1 cut(s)	2223
Eam1104I	CTCTTC	1 cut(s)	1939
EarI	CTCTTC	1 cut(s)	1939
Ecl136II	GAGCTC	2 cut(s)	694, 1696
Eco105I	TACGTA	2 cut(s)	206, 635
Eco130I	CCWWGG	2 cut(s)	1477, 2220
Eco24I	GRGCYC	3 cut(s)	172, 696, 1698
Eco47I	GGWCC	2 cut(s)	464, 1042
Eco47III	AGCGCT	1 cut(s)	1931
Eco53kI	GAGCTC	2 cut(s)	694, 1696
Eco57I	CTGAAG	7 cut(s)	384, 1121, 1394, 1442, 1782, 1871, 2006
Eco88I	CYCGRG	2 cut(s)	308, 320
Eco91I	GGTNACC	1 cut(s)	1226
EcoICRI	GAGCTC	2 cut(s)	694, 1696
EcoO109I	RGGNCCY	4 cut(s)	168, 169, 464, 1042
EcoO65I	GGTNACC	1 cut(s)	1226
EcoRII	CCWGG	5 cut(s)	164, 460, 677, 1044, 1774
EcoT14I	CCWWGG	2 cut(s)	1477, 2220
EcoT22I	ATGCAT	1 cut(s)	717
EcoT38I	GRGCYC	3 cut(s)	172, 696, 1698
ErhI	CCWWGG	2 cut(s)	1477, 2220
FaeI	CATG	8 cut(s)	50, 307, 580, 622, 715, 946, 1253, 1689
FaqI	GGGAC	2 cut(s)	1062, 1753
FatI	CATG	8 cut(s)	46, 303, 576, 618, 711, 942, 1249, 1685
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	8 cut(s)	458, 917, 1719, 1878, 1914, 1917, 2099, 2203
FokI	GGATG	6 cut(s)	847, 968, 1791, 1814, 2023, 2030
FriOI	GRGCYC	3 cut(s)	172, 696, 1698
Fsp4HI	GCNGC	8 cut(s)	458, 917, 1719, 1878, 1914, 1917, 2099, 2203
FspBI	CTAG	9 cut(s)	252, 549, 1190, 1257, 1301, 1410, 1859, 1955, 2079
GlaI	GCGC	1 cut(s)	1931
GluI	GCNGC	8 cut(s)	458, 917, 1719, 1878, 1914, 1917, 2099, 2203
GsaI	CCCAGC	1 cut(s)	1582
GsuI	CTGGAG	3 cut(s)	1520, 1688, 1719
HaeII	RGCGCY	1 cut(s)	1933
HaeIII	GGCC	2 cut(s)	170, 2225
HgaI	GACGC	1 cut(s)	1060
HhaI	GCGC	1 cut(s)	1932
Hin1II	CATG	8 cut(s)	50, 307, 580, 622, 715, 946, 1253, 1689
Hin6I	GCGC	1 cut(s)	1930
HinP1I	GCGC	1 cut(s)	1930
HindIII	AAGCTT	2 cut(s)	536, 2229
HphI	GGTGA	1 cut(s)	1343
Hpy166II	GTNNAC	4 cut(s)	125, 209, 242, 911
Hpy8I	GTNNAC	4 cut(s)	125, 209, 242, 911
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	6 cut(s)	182, 292, 307, 525, 1846, 2051
HpyCH4III	ACNGT	7 cut(s)	353, 870, 1290, 1419, 1664, 1767, 1884
HpyCH4IV	ACGT	4 cut(s)	205, 634, 816, 1942
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 248, 454, 1246, 1304
HpySE526I	ACGT	4 cut(s)	205, 634, 816, 1942
Hsp92II	CATG	8 cut(s)	50, 307, 580, 622, 715, 946, 1253, 1689
HspAI	GCGC	1 cut(s)	1930
Kzo9I	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
LguI	GCTCTTC	1 cut(s)	1939
LmnI	GCTCC	5 cut(s)	34, 699, 760, 1162, 1701
Lsp1109I	GCAGC	7 cut(s)	444, 928, 1705, 1889, 1900, 1928, 2214
LweI	GCATC	6 cut(s)	40, 217, 559, 2008, 2014, 2131
MaeI	CTAG	9 cut(s)	252, 549, 1190, 1257, 1301, 1410, 1859, 1955, 2079
MaeII	ACGT	4 cut(s)	205, 634, 816, 1942
MaeIII	GTNAC	5 cut(s)	130, 630, 1076, 1226, 1284
MalI	GATC	6 cut(s)	513, 560, 802, 1569, 1947, 1968
MboI	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
MflI	RGATCY	2 cut(s)	1567, 1966
MhlI	GDGCHC	5 cut(s)	172, 244, 696, 1698, 2086
MlsI	TGGCCA	1 cut(s)	2225
MluNI	TGGCCA	1 cut(s)	2225
MlyI	GAGTC	4 cut(s)	622, 1106, 1292, 1513
MmeI	TCCRAC	3 cut(s)	858, 1140, 1723
Mox20I	TGGCCA	1 cut(s)	2225
Mph1103I	ATGCAT	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	2225
Msp20I	TGGCCA	1 cut(s)	2225
MspA1I	CMGCKG	2 cut(s)	1582, 1849
MspCI	CTTAAG	1 cut(s)	286
MspR9I	CCNGG	5 cut(s)	166, 462, 679, 1046, 1776
Mva1269I	GAATGC	2 cut(s)	715, 1956
MvaI	CCWGG	5 cut(s)	166, 462, 679, 1046, 1776
MvnI	CGCG	2 cut(s)	1071, 2098
MwoI	GCNNNNNNNGC	5 cut(s)	176, 248, 454, 1246, 1304
NdeII	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
NheI	GCTAGC	1 cut(s)	1954
NlaIII	CATG	8 cut(s)	50, 307, 580, 622, 715, 946, 1253, 1689
NlaIV	GGNNCC	2 cut(s)	170, 1483
NmeAIII	GCCGAG	1 cut(s)	2163
NmuCI	GTSAC	2 cut(s)	1076, 1284
NsiI	ATGCAT	1 cut(s)	717
NspI	RCATGY	3 cut(s)	307, 715, 1689
PaeR7I	CTCGAG	2 cut(s)	308, 320
PagI	TCATGA	1 cut(s)	618
PciI	ACATGT	1 cut(s)	1685
PciSI	GCTCTTC	1 cut(s)	1939
PctI	GAATGC	2 cut(s)	715, 1956
PfeI	GAWTC	8 cut(s)	157, 260, 325, 368, 402, 848, 1385, 1463
PflMI	CCANNNNNTGG	2 cut(s)	1742, 2221
PkrI	GCNGC	8 cut(s)	459, 918, 1720, 1879, 1915, 1918, 2100, 2204
PleI	GAGTC	4 cut(s)	621, 1105, 1291, 1512
PpsI	GAGTC	4 cut(s)	621, 1105, 1291, 1512
Ppu21I	YACGTR	3 cut(s)	206, 635, 1943
PpuMI	RGGWCCY	2 cut(s)	464, 1042
PscI	ACATGT	1 cut(s)	1685
PshAI	GACNNNNGTC	1 cut(s)	214
PshBI	ATTAAT	2 cut(s)	11, 1560
Psp124BI	GAGCTC	2 cut(s)	696, 1698
Psp5II	RGGWCCY	2 cut(s)	464, 1042
Psp6I	CCWGG	5 cut(s)	164, 460, 677, 1044, 1774
PspEI	GGTNACC	1 cut(s)	1226
PspFI	CCCAGC	1 cut(s)	1578
PspGI	CCWGG	5 cut(s)	164, 460, 677, 1044, 1774
PspN4I	GGNNCC	2 cut(s)	170, 1483
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	168, 169, 464, 1042
PspPPI	RGGWCCY	2 cut(s)	464, 1042
PstI	CTGCAG	3 cut(s)	997, 1270, 1918
PstNI	CAGNNNCTG	2 cut(s)	467, 1427
PsuI	RGATCY	2 cut(s)	1567, 1966
PvuII	CAGCTG	2 cut(s)	1582, 1849
RsaI	GTAC	4 cut(s)	347, 1091, 1113, 1452
RsaNI	GTAC	4 cut(s)	346, 1090, 1112, 1451
SacI	GAGCTC	2 cut(s)	696, 1698
SapI	GCTCTTC	1 cut(s)	1939
SatI	GCNGC	8 cut(s)	458, 917, 1719, 1878, 1914, 1917, 2099, 2203
Sau3AI	GATC	6 cut(s)	511, 558, 800, 1567, 1945, 1966
Sau96I	GGNCC	4 cut(s)	168, 169, 464, 1042
SchI	GAGTC	4 cut(s)	622, 1106, 1292, 1513
ScrFI	CCNGG	5 cut(s)	166, 462, 679, 1046, 1776
SduI	GDGCHC	5 cut(s)	172, 244, 696, 1698, 2086
SfaNI	GCATC	6 cut(s)	40, 217, 559, 2008, 2014, 2131
SfcI	CTRYAG	4 cut(s)	993, 1266, 1415, 1914
Sfr274I	CTCGAG	2 cut(s)	308, 320
SinI	GGWCC	2 cut(s)	464, 1042
SlaI	CTCGAG	2 cut(s)	308, 320
SmlI	CTYRAG	5 cut(s)	286, 308, 320, 741, 1691
SmoI	CTYRAG	5 cut(s)	286, 308, 320, 741, 1691
SnaBI	TACGTA	2 cut(s)	206, 635
SsiI	CCGC	2 cut(s)	1517, 2098
SspMI	CTAG	9 cut(s)	252, 549, 1190, 1257, 1301, 1410, 1859, 1955, 2079
SstI	GAGCTC	2 cut(s)	696, 1698
StyD4I	CCNGG	5 cut(s)	164, 460, 677, 1044, 1774
StyI	CCWWGG	2 cut(s)	1477, 2220
TaaI	ACNGT	7 cut(s)	353, 870, 1290, 1419, 1664, 1767, 1884
TaiI	ACGT	4 cut(s)	208, 637, 819, 1945
TaqII	GACCGA	1 cut(s)	345
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	2101
TfiI	GAWTC	8 cut(s)	157, 260, 325, 368, 402, 848, 1385, 1463
TscAI	CASTG	6 cut(s)	829, 1081, 1293, 1806, 1887, 1915
TseFI	GTSAC	2 cut(s)	1076, 1284
TseI	GCWGC	7 cut(s)	457, 916, 1718, 1877, 1913, 1916, 2202
Tsp45I	GTSAC	2 cut(s)	1076, 1284
TspGWI	ACGGA	1 cut(s)	1742
TspRI	CASTG	6 cut(s)	829, 1081, 1293, 1806, 1887, 1915
Van91I	CCANNNNNTGG	2 cut(s)	1742, 2221
Vha464I	CTTAAG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	464, 1042
VspI	ATTAAT	2 cut(s)	11, 1560
XapI	RAATTY	2 cut(s)	233, 296
XbaI	TCTAGA	1 cut(s)	1189
XceI	RCATGY	3 cut(s)	307, 715, 1689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1834
XhoI	CTCGAG	2 cut(s)	308, 320
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	9 cut(s)	252, 549, 1190, 1257, 1301, 1410, 1859, 1955, 2079
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.