Rorug05G0565200

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004602
Physical Location & Seq
Forward (+)
75752553 .. 75755869
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0565200.1

Sequence Viewer

Length: 1605 bp
ATGGCTCTCCGGTTAGGCATCCGTACCCTTATCTTTGGCCTCCTACTTGTTCTTAGCAGTACAGGGACAAGTAGTCATAGTAGAAAAGCTGCCCCCCAAAAGAAGTCACGTAACTCTACTTCCTTCAGCCGCAGCACATTTCCGGCAGGTTTCATATTCGGGACAGCTTCCGCGGCTTATCAGTTCGAAGGGGCTGCAAAAGAAGGTGGTAGAGAACCGTGTGTATGGGACGCCTTTACTCACAAGTATCCAGAGAAGATCAAGGACCACAGCAGTGGAGATGTGGCTACTGATCAATATCATCGGTACAAGGAAGATGTGAAGATGTTGAAGGACATAGGTTGGGATGCTTACAGATTCTCAATCTCATGGTCTAGACTGTTACCAAATGGAAAGCTGAGTGGGGGTGTGAACCAGGAAGGAATCAAATATTACAAGAATCTCATCAACGAGCTTATAGCAAATGGAATAAGCCCCTACGTCACACTCTTTCATTGGGATACGCCCCAAGCTTTAGAAGAGGAATACGGTGGCTTCCTAAGCCCTCAAATTGTGAATCATTTCCAGGACTTTGCAGAGCTCTGCTATAAAGAATTTGGTGACAAAGTCAAGCATTGGACTACACTAAATGAGCCGCATACATACAGCGTCAATGGTTATGCAACCGGGGGAATGGCACCAGGCAGATGTTCTGCTTGGAAAAATCCTAATTGCACCGGTGGCGATTCAGGGACTGAGCCATATTTGGTGTCACATCACCTACTTCTAGCTCATGCCGCTGCTGTGAAGGTGTACCGAGACAAATTTCAGGCAAAACAGAAGGGTTTGATAGGGATAACGGTAAACACAGGATGGTTTGTGCCATATTCCGACTCAAAGCGTGACCAAGATGCTGCTCAACGAGCAATGGATTTCAACCTCGGATGGTTTATGGATCCCATAACAGATGGTGACTATCCGCACATCATGAGATCTCTTGTTGGAAATCGATTACCCAAGTTCACTAAAGAGCAATCACATATGCTAAAAGGATCATTTGATTTTGTTGGGTTGAACTACTACTCCGGTGGTTATGCAGCGGATTTAGCTAAACCTGATCCTAAGCAACCAAGCTACACGACAGACTCCCTCGTTAATACTACATCCGAACGTAATGGTGTACCTATTGGTCCAGTGGCGGCTTCATCGTGGCTCCTTGTCTTTCCTCAAGGATTTCTAGATCTATTGCTCTACACAAAGAAAAAGTACAGTGATCCGATTATTTATATCACTGAAAATGGAGTGGATGAGGTGAATGATCCTACATGGTCGCTTGAGAAAGCTCTTAACGATAGTAAAAGAATTGAATATTACGATCAACATCTTCAGAAACTTCATGCAGCAATTAAGGCTGGCGTCAAGGTAAAGGGATACTTTGCATGGTCATTCCTTGATAACTTCGAGTGGGCTGATGGTTACACTGTAAGATTTGGCATCGTCTATGTGGATTTCAAAAATGGGCTCAAAAGACACCCTAAAGCCTCAGCAAACTGGTTCAAGAATTTTCTTAAAAAGTCTAAACAATCAGGAAAGAGAACCTCTCACAAATCTGAATCACTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
FPP

Protein Analysis

534

Amino Acids

60.04

Weight (kDa)

9.08

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 44 - 519 6.8e-159 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 676
AccII CGCG 1 cut(s) 173
AciI CCGC 8 cut(s) 130, 171, 173, 635, 777, 959, 1079, 1178
AclWI GGATC 6 cut(s) 929, 942, 1039, 1091, 1247, 1292
AcsI RAATTY 3 cut(s) 593, 803, 1540
AcuI CTGAAG 2 cut(s) 109, 1349
AcyI GRCGYC 2 cut(s) 231, 1395
AfaI GTAC 6 cut(s) 25, 61, 308, 794, 1161, 1247
AgeI ACCGGT 1 cut(s) 716
AgsI TTSAA 6 cut(s) 331, 916, 1054, 1346, 1492, 1537
AhdI GACNNNNNGTC 1 cut(s) 72
AhlI ACTAGT 1 cut(s) 1597
AjnI CCWGG 3 cut(s) 414, 564, 679
AleI CACNNNNGTG 1 cut(s) 273
AloI GAACNNNNNNTCC 2 cut(s) 1046, 1078
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 6 cut(s) 929, 942, 1039, 1091, 1247, 1292
AlwNI CAGNNNCTG 1 cut(s) 734
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 7 cut(s) 89, 132, 194, 779, 893, 1076, 1379
ApoI RAATTY 3 cut(s) 593, 803, 1540
AsiGI ACCGGT 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 265, 1169
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 4 cut(s) 611, 749, 962, 1303
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 2 cut(s) 265, 1169
BamHI GGATCC 1 cut(s) 934
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 2 cut(s) 582, 1503
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
Bbv12I GWGCWC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 1522
BbvI GCAGC 7 cut(s) 76, 144, 181, 766, 880, 1088, 1391
BccI CCATC 4 cut(s) 846, 918, 941, 1445
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 3 cut(s) 416, 566, 681
BciVI GTATCC 3 cut(s) 258, 493, 1403
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 792
BcuI ACTAGT 1 cut(s) 1597
BfaI CTAG 4 cut(s) 375, 767, 1217, 1598
BfuAI ACCTGC 1 cut(s) 137
BfuI GTATCC 3 cut(s) 258, 493, 1403
BglII AGATCT 2 cut(s) 971, 1219
Bme1390I CCNGG 4 cut(s) 416, 566, 667, 681
Bme18I GGWCC 2 cut(s) 265, 1169
BmeRI GACNNNNNGTC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 265, 1169
BmiI GGNNCC 3 cut(s) 678, 936, 1193
BmrFI CCNGG 4 cut(s) 416, 566, 667, 681
BmsI GCATC 4 cut(s) 27, 337, 880, 1482
BplI GAGNNNNNCTC 2 cut(s) 1564, 1596
Bpu10I CCTNAGC 3 cut(s) 539, 1101, 1522
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 1191, 1334
BpuMI CCSGG 1 cut(s) 667
Bsa29I ATCGAT 1 cut(s) 988
BsaAI YACGTR 1 cut(s) 110
BsaBI GATNNNNATC 2 cut(s) 297, 1359
BsaHI GRCGYC 2 cut(s) 231, 1395
BsaJI CCNNGG 3 cut(s) 171, 666, 919
BsaWI WCCGGW 3 cut(s) 9, 716, 1064
BsaXI ACNNNNNCTCC 2 cut(s) 1046, 1076
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 2 cut(s) 1172, 1535
Bse3DI GCAATG 1 cut(s) 912
Bse8I GATNNNNATC 2 cut(s) 297, 1359
BseBI CCWGG 3 cut(s) 416, 566, 681
BseCI ATCGAT 1 cut(s) 988
BseDI CCNNGG 3 cut(s) 171, 666, 919
BseGI GGATG 6 cut(s) 18, 352, 857, 929, 1142, 1291
BseJI GATNNNNATC 2 cut(s) 297, 1359
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 3 cut(s) 389, 726, 1536
BseNI ACTGG 2 cut(s) 1172, 1535
BseXI GCAGC 7 cut(s) 76, 144, 181, 766, 880, 1088, 1391
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 676
BshTI ACCGGT 1 cut(s) 716
BshVI ATCGAT 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 5 cut(s) 10, 143, 666, 717, 1065
BslFI GGGAC 4 cut(s) 79, 175, 242, 745
BsmAI GTCTC 1 cut(s) 792
BsmFI GGGAC 4 cut(s) 79, 175, 242, 745
BsnI GGCC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 582, 1503
BspACI CCGC 8 cut(s) 130, 171, 173, 635, 777, 959, 1079, 1178
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 390, 727, 1535
BspDI ATCGAT 1 cut(s) 988
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 966
BspLI GGNNCC 3 cut(s) 678, 936, 1193
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 6 cut(s) 929, 942, 1039, 1091, 1247, 1292
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 716
BsrI ACTGG 2 cut(s) 1172, 1535
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 3 cut(s) 171, 666, 919
BssNI GRCGYC 2 cut(s) 231, 1395
Bst2UI CCWGG 3 cut(s) 416, 566, 681
Bst4CI ACNGT 6 cut(s) 219, 381, 530, 841, 1250, 1462
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 2 cut(s) 231, 1395
BstBAI YACGTR 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 1393
BstDEI CTNAG 6 cut(s) 53, 398, 539, 735, 1101, 1522
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 6 cut(s) 18, 352, 857, 929, 1142, 1291
BstFNI CGCG 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 792
BstMWI GCNNNNNNNGC 7 cut(s) 173, 540, 720, 776, 902, 1085, 1388
BstNI CCWGG 3 cut(s) 416, 566, 681
BstSCI CCNGG 4 cut(s) 414, 564, 665, 679
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 7 cut(s) 76, 144, 181, 766, 880, 1088, 1391
BstX2I RGATCY 3 cut(s) 934, 971, 1219
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 3 cut(s) 934, 971, 1219
Bsu15I ATCGAT 1 cut(s) 988
BsuI GTATCC 3 cut(s) 258, 493, 1403
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 988
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 6 cut(s) 18, 352, 857, 929, 1142, 1291
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 5 cut(s) 280, 1179, 1255, 1269, 1458
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 1393
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 966
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 2 cut(s) 265, 1169
Cfr42I CCGCGG 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 988
CseI GACGC 3 cut(s) 239, 637, 1384
Csp6I GTAC 6 cut(s) 24, 60, 307, 793, 1160, 1246
CspAI ACCGGT 1 cut(s) 716
CviAII CATG 6 cut(s) 369, 773, 967, 1305, 1376, 1419
CviQI GTAC 6 cut(s) 24, 60, 307, 793, 1160, 1246
DdeI CTNAG 6 cut(s) 53, 398, 539, 735, 1101, 1522
DriI GACNNNNNGTC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 513
Eam1105I GACNNNNNGTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 582, 1503
Eco47I GGWCC 2 cut(s) 265, 1169
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 109, 1349
EcoICRI GAGCTC 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 414, 564, 679
EcoT38I GRGCYC 2 cut(s) 582, 1503
FaeI CATG 6 cut(s) 372, 776, 970, 1308, 1379, 1422
FalI AAGNNNNNCTT 2 cut(s) 1397, 1429
FaqI GGGAC 4 cut(s) 79, 175, 242, 745
FatI CATG 6 cut(s) 368, 772, 966, 1304, 1375, 1418
FauNDI CATATG 1 cut(s) 1020
FbaI TGATCA 1 cut(s) 292
FokI GGATG 6 cut(s) 5, 359, 864, 936, 1129, 1298
FriOI GRGCYC 2 cut(s) 582, 1503
FspBI CTAG 4 cut(s) 375, 767, 1217, 1598
HaeIII GGCC 1 cut(s) 39
HapII CCGG 5 cut(s) 10, 143, 666, 717, 1065
HgaI GACGC 3 cut(s) 239, 637, 1384
Hin1I GRCGYC 2 cut(s) 231, 1395
Hin1II CATG 6 cut(s) 372, 776, 970, 1308, 1379, 1422
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 8 cut(s) 357, 423, 439, 556, 725, 872, 1124, 1592
HpaII CCGG 5 cut(s) 10, 143, 666, 717, 1065
HphI GGTGA 4 cut(s) 611, 749, 962, 1303
Hpy166II GTNNAC 5 cut(s) 412, 793, 844, 1002, 1160
Hpy188I TCNGA 6 cut(s) 871, 923, 1147, 1257, 1368, 1591
Hpy188III TCNNGA 7 cut(s) 160, 251, 375, 967, 1217, 1537, 1566
Hpy8I GTNNAC 5 cut(s) 412, 793, 844, 1002, 1160
HpyAV CCTTC 7 cut(s) 133, 182, 197, 325, 413, 781, 814
HpyCH4III ACNGT 6 cut(s) 219, 381, 530, 841, 1250, 1462
HpyCH4IV ACGT 3 cut(s) 109, 480, 1150
HpyCH4V TGCA 7 cut(s) 197, 575, 662, 714, 1076, 1379, 1418
HpyF10VI GCNNNNNNNGC 7 cut(s) 173, 540, 720, 776, 902, 1085, 1388
HpyF3I CTNAG 6 cut(s) 53, 398, 539, 735, 1101, 1522
HpySE526I ACGT 3 cut(s) 109, 480, 1150
Hsp92I GRCGYC 2 cut(s) 231, 1395
Hsp92II CATG 6 cut(s) 372, 776, 970, 1308, 1379, 1422
Ksp22I TGATCA 1 cut(s) 292
KspI CCGCGG 1 cut(s) 174
LmnI GCTCC 1 cut(s) 1197
Lsp1109I GCAGC 7 cut(s) 76, 144, 181, 766, 880, 1088, 1391
LweI GCATC 4 cut(s) 27, 337, 880, 1482
MaeI CTAG 4 cut(s) 375, 767, 1217, 1598
MaeII ACGT 3 cut(s) 109, 480, 1150
MaeIII GTNAC 9 cut(s) 105, 110, 381, 481, 599, 750, 881, 950, 1454
MboII GAAGA 5 cut(s) 268, 326, 334, 530, 1355
MflI RGATCY 3 cut(s) 934, 971, 1219
MhlI GDGCHC 2 cut(s) 582, 1503
MluCI AATT 7 cut(s) 549, 593, 709, 803, 1341, 1383, 1540
MlyI GAGTC 2 cut(s) 866, 1118
MmeI TCCRAC 2 cut(s) 894, 961
MnlI CCTC 9 cut(s) 50, 514, 555, 929, 1139, 1215, 1282, 1531, 1588
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 4 cut(s) 1134, 1326, 1386, 1548
MslI CAYNNNNRTG 2 cut(s) 273, 1600
MspA1I CMGCKG 3 cut(s) 173, 779, 1079
MspI CCGG 5 cut(s) 10, 143, 666, 717, 1065
MspR9I CCNGG 4 cut(s) 416, 566, 667, 681
MvaI CCWGG 3 cut(s) 416, 566, 681
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 7 cut(s) 173, 540, 720, 776, 902, 1085, 1388
NciI CCSGG 1 cut(s) 667
NdeI CATATG 1 cut(s) 1020
NlaIII CATG 6 cut(s) 372, 776, 970, 1308, 1379, 1422
NlaIV GGNNCC 3 cut(s) 678, 936, 1193
NmuCI GTSAC 6 cut(s) 105, 481, 599, 750, 881, 950
NspV TTCGAA 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 273
PagI TCATGA 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 6 cut(s) 357, 423, 439, 556, 725, 1592
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 564
PinAI ACCGGT 1 cut(s) 716
PleI GAGTC 2 cut(s) 866, 1118
PpsI GAGTC 2 cut(s) 866, 1118
Ppu21I YACGTR 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 414, 564, 679
PspGI CCWGG 3 cut(s) 414, 564, 679
PspN4I GGNNCC 3 cut(s) 678, 936, 1193
PspPI GGNCC 2 cut(s) 265, 1169
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 3 cut(s) 934, 971, 1219
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 6 cut(s) 25, 61, 308, 794, 1161, 1247
RsaNI GTAC 6 cut(s) 24, 60, 307, 793, 1160, 1246
RseI CAYNNNNRTG 2 cut(s) 273, 1600
SacI GAGCTC 1 cut(s) 582
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 4 cut(s) 1134, 1326, 1386, 1548
Sau96I GGNCC 2 cut(s) 265, 1169
SchI GAGTC 2 cut(s) 866, 1118
ScrFI CCNGG 4 cut(s) 416, 566, 667, 681
SduI GDGCHC 2 cut(s) 582, 1503
SfaNI GCATC 4 cut(s) 27, 337, 880, 1482
Sfr303I CCGCGG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 716
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 2 cut(s) 265, 1169
SmiMI CAYNNNNRTG 2 cut(s) 273, 1600
SmlI CTYRAG 2 cut(s) 1206, 1313
SmoI CTYRAG 2 cut(s) 1206, 1313
SpeI ACTAGT 1 cut(s) 1597
Sse9I AATT 7 cut(s) 549, 593, 709, 803, 1341, 1383, 1540
SsiI CCGC 8 cut(s) 130, 171, 173, 635, 777, 959, 1079, 1178
SspI AATATT 2 cut(s) 431, 1349
SspMI CTAG 4 cut(s) 375, 767, 1217, 1598
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 4 cut(s) 414, 564, 665, 679
TaaI ACNGT 6 cut(s) 219, 381, 530, 841, 1250, 1462
TaiI ACGT 3 cut(s) 112, 483, 1153
TaqI TCGA 3 cut(s) 186, 988, 1440
TasI AATT 7 cut(s) 549, 593, 709, 803, 1341, 1383, 1540
TatI WGTACW 2 cut(s) 59, 1245
TauI GCSGC 5 cut(s) 132, 176, 637, 779, 1181
TfiI GAWTC 6 cut(s) 357, 423, 439, 556, 725, 1592
Tru1I TTAA 4 cut(s) 1134, 1326, 1386, 1548
Tru9I TTAA 4 cut(s) 1134, 1326, 1386, 1548
TscAI CASTG 5 cut(s) 280, 1179, 1255, 1276, 1465
TseFI GTSAC 6 cut(s) 105, 481, 599, 750, 881, 950
TseI GCWGC 7 cut(s) 89, 132, 194, 779, 893, 1076, 1379
Tsp45I GTSAC 6 cut(s) 105, 481, 599, 750, 881, 950
TspDTI ATGAA 4 cut(s) 142, 482, 1173, 1364
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 5 cut(s) 280, 1179, 1255, 1276, 1465
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 265, 1169
XapI RAATTY 3 cut(s) 593, 803, 1540
XbaI TCTAGA 2 cut(s) 374, 1216
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 4 cut(s) 375, 767, 1217, 1598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.