Rroxscaffold_1G00042850

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004602
Physical Location & Seq
Reverse (-)
61146638 .. 61147419
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042850.1

Sequence Viewer

Length: 387 bp
ATGGAATCTGCAAAGAAAGAAATGGAAGCTAGGCTACAGTCAGAAACTGAAAAGAATGAAGTGTTGATGGTACAACTTCAGGAATCACAGCAAAGCCTTGGAACCTTACAAACAGAACTGGAGAGTCTGAGAGAGGTGTTCTCGACCACCAGCGCTGCAGCCAACACCAAGCGCTCTTCCCCACGTGATCGAATGCTAGCTGAGGAAGATCCCAGAGCAGAGGTTCTGAAGTCTCCAAAAGATAAACAAGCAATGAGGGATGCAGATGCTCAGAAACCATCCCTTCTGCACTCGGATAGTCATAACGCATTGCCCACTCCTAGTGCTCTGGAAATAGTGTTTAGTGAACATCTTGAAGAAGAAGATTATGTATTGCTTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
FPP

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

4.76

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPP PF05911 1 - 65 1.2e-06 Filament-like plant protein, long coiled-coil
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 62, 248
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 72
AfeI AGCGCT 2 cut(s) 154, 173
AgsI TTSAA 1 cut(s) 356
AluBI AGCT 2 cut(s) 29, 200
AluI AGCT 2 cut(s) 29, 200
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 47
Aor51HI AGCGCT 2 cut(s) 154, 173
ApeKI GCWGC 2 cut(s) 155, 158
AspLEI GCGC 2 cut(s) 155, 174
AsuNHI GCTAGC 1 cut(s) 196
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbrPI CACGTG 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 328
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 142, 170
BccI CCATC 2 cut(s) 61, 286
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 3 cut(s) 30, 197, 321
BfmI CTRYAG 2 cut(s) 35, 156
BfoI RGCGCY 2 cut(s) 156, 175
BisI GCNGC 2 cut(s) 156, 159
BlsI GCNGC 2 cut(s) 157, 160
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 250, 256
BmtI GCTAGC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 2 cut(s) 258, 308
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 265, 278
BseMI GCAATG 2 cut(s) 258, 308
BseMII CTCAG 3 cut(s) 119, 192, 284
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 142, 170
BsgI GTGCAG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 2 cut(s) 187, 208
BspCNI CTCAG 3 cut(s) 120, 193, 283
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 258, 308
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 187, 208
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 128, 201, 270
BstF5I GGATG 2 cut(s) 265, 278
BstH2I RGCGCY 2 cut(s) 156, 175
BstHHI GCGC 2 cut(s) 155, 174
BstKTI GATC 2 cut(s) 190, 211
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 187, 208
BstSFI CTRYAG 2 cut(s) 35, 156
BstV1I GCAGC 2 cut(s) 142, 170
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsCI GGATG 2 cut(s) 265, 278
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 47
CfoI GCGC 2 cut(s) 155, 174
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 5 cut(s) 29, 34, 96, 161, 200
CviKI_1 RGCY 5 cut(s) 29, 34, 96, 161, 200
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 3 cut(s) 128, 201, 270
DpnI GATC 2 cut(s) 189, 210
DpnII GATC 2 cut(s) 187, 208
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 97
Eco47III AGCGCT 2 cut(s) 154, 173
Eco57I CTGAAG 2 cut(s) 62, 248
Eco72I CACGTG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaiI YATR 2 cut(s) 303, 369
Fnu4HI GCNGC 2 cut(s) 156, 159
FokI GGATG 2 cut(s) 265, 272
Fsp4HI GCNGC 2 cut(s) 156, 159
FspBI CTAG 3 cut(s) 30, 197, 321
GlaI GCGC 2 cut(s) 154, 173
GluI GCNGC 2 cut(s) 156, 159
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 2 cut(s) 156, 175
HhaI GCGC 2 cut(s) 155, 174
Hin6I GCGC 2 cut(s) 153, 172
HinP1I GCGC 2 cut(s) 153, 172
HinfI GANTC 3 cut(s) 5, 83, 124
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 5 cut(s) 43, 129, 228, 273, 295
Hpy188III TCNNGA 4 cut(s) 80, 142, 329, 353
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 11, 158, 263, 289
HpyF3I CTNAG 3 cut(s) 128, 201, 270
HpySE526I ACGT 1 cut(s) 184
HspAI GCGC 2 cut(s) 153, 172
Kzo9I GATC 2 cut(s) 187, 208
LguI GCTCTTC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 65, 104, 163, 226, 314
Lsp1109I GCAGC 2 cut(s) 142, 170
LweI GCATC 2 cut(s) 250, 256
MaeI CTAG 3 cut(s) 30, 197, 321
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 189, 210
MboI GATC 2 cut(s) 187, 208
MboII GAAGA 5 cut(s) 168, 218, 368, 371, 374
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 328
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 4 cut(s) 127, 196, 214, 249
Mva1269I GAATGC 1 cut(s) 198
NdeII GATC 2 cut(s) 187, 208
NheI GCTAGC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 181
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 5, 83
PkrI GCNGC 2 cut(s) 157, 160
PleI GAGTC 1 cut(s) 132
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 185
PspCI CACGTG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 181
SatI GCNGC 2 cut(s) 156, 159
Sau3AI GATC 2 cut(s) 187, 208
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 328
SetI ASST 6 cut(s) 31, 107, 138, 187, 202, 225
SfaNI GCATC 2 cut(s) 250, 256
SfcI CTRYAG 2 cut(s) 35, 156
SspMI CTAG 3 cut(s) 30, 197, 321
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 143, 190
TfiI GAWTC 2 cut(s) 5, 83
TseI GCWGC 2 cut(s) 155, 158
TspDTI ATGAA 1 cut(s) 72
XspI CTAG 3 cut(s) 30, 197, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.