Rorug05G0565100

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004602
Physical Location & Seq
Forward (+)
75695905 .. 75751317
55413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0565100.1

Sequence Viewer

Length: 1554 bp
ATGGCTCTCCGGTTAGGCATCCGTAACCTTATCTTTGGCCTCCTACTTATTCTTAGCAGTACAGGGACAAGTAGTCATAGTAGCAGAAAAGCTGCCCCCCAAAAGAAGTCACGTAATTCTACTTCCTTCAGCCGCAGCACATTTCCGGCAGGTTCATATTCGGGACAGCTTCCGCAGCTTACCAGTTCGAAGGGGCTGCAAAAGAAGGTGGTAGAGGACCGTGTGTATGGGACGCCTTTACTCACAAAGAAGATCAAGGACCACAGCAGTGGAGATGTGGCTACTGATCAATATCATCGGTACAAGGAGGATGTTGGCATCATGAAAAATATGGGTTTTGATGCTTACAGATTCTCCATCTCGTGGTCTAGATTGTTACCAAATGGAACGCTAAGAGGGGGTGTGAATAAGGAAGGAATCAAATATTACAACAACCTCATAAACGAGCTTCTAGCCAATGGTCTAAAGCCCTTTGTCACACTCTTCCATTGGGATCTTCCCCAAGCTTTAGAAGATGAATACGGTGGCTTCTTAAGCCCTCAAATTGTAAACCATTTCCAAGACTACGCAGAGCTATGCTTCAAGGAATTTGGTGATAGAGTTAAGGACTGGATCACATTAAACGAGCCCTGGAGCTACGCCAATGGTGGTTATGTAATTGGGACGTTTGCACCATGCCGATGTTCTGAATGGCAAAACCTAAATTGCACCGGTGGAAATTCAGGAACAGAGCCATATTTAGTCTCACACTACCAGCTTCTAGCTCACGCAGCAGCCGTAAAGTTATACAAGGAGAAGTATCAGGCTGATCAGAAGGGTGTGATAGGGATAACAATACTGTCGCACTGGTTTGTGCCCTTTTCTGATGCCAAGCACCATGAAGAAGCTGCTCTACGAGCATTGGATTTTATGTTTGGATGGTATATGGATCCCTTAACAAACGGTGAATATCCGCACAGCATGAGATCTCTTGTCGGAGATCGATTACCCAAGTTCACTAAAGAGCAATCCGAGATGTTAAAAGGTTCATTTGATTTTCTGGGATTGAATTACTACACCGCTAACTATGCTACTTATGCACCTCATCTCAAGAATTCTGCAAACCCTAGCTACTTTACAGATGCTGTCGCTACTGTTTCCACCGAGCGTAATGGTATTCCTATTGGTCAAAAGGCTGCTTCAGATTGGCTCTATGTTTATCCAGAAGGAATTCGAGAACTATTGCTTTACACGAAGGAAAAGTACAATAATCCACTTATTTACATCACTGAAAATGGAAGGGATGAGCACAATGATCCCAAATTATCACTTGAGGAAGCCCTAGCCGATACTCACCGAATCGACTTTTACTATCGACATCTTTATTATCTTCATGAAGCGATCAAGGATGGCGTTAACGTGAAGGGATATTTTGCTTGGTCTTTGTTTGACAACTTCGAATGGAATATGGGTTACAGTGTTAGGTTTGGCATCAACTATGTGGATTACAATGATGGACTCAAAAGATATCCTAAACTCTCAGCACACTGGTTCAAGAATTTTCTTGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
FPP

Protein Analysis

517

Amino Acids

59.14

Weight (kDa)

7.68

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 83 - 516 4.1e-139 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 363
AciI CCGC 4 cut(s) 133, 173, 953, 1059
AclWI GGATC 5 cut(s) 501, 620, 923, 936, 1289
AcsI RAATTY 5 cut(s) 587, 718, 1093, 1209, 1537
AcuI CTGAAG 2 cut(s) 112, 1164
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 3 cut(s) 61, 302, 1244
AfiI CCNNNNNNNGG 1 cut(s) 363
AflII CTTAAG 1 cut(s) 532
AgeI ACCGGT 1 cut(s) 710
AgsI TTSAA 4 cut(s) 583, 1048, 1534, 1547
AhdI GACNNNNNGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 629
AleI CACNNNNGTG 1 cut(s) 267
Alw21I GWGCWC 1 cut(s) 1290
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 5 cut(s) 501, 620, 923, 936, 1289
AlwNI CAGNNNCTG 1 cut(s) 1124
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 8 cut(s) 92, 135, 175, 196, 770, 773, 887, 1175
ApoI RAATTY 5 cut(s) 587, 718, 1093, 1209, 1537
AsiGI ACCGGT 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 1209
AspS9I GGNCC 2 cut(s) 217, 259
AsuHPI GGTGA 3 cut(s) 605, 956, 1325
AsuII TTCGAA 2 cut(s) 188, 1437
AvaII GGWCC 2 cut(s) 217, 259
BaeGI GKGCMC 1 cut(s) 858
BamHI GGATCC 1 cut(s) 928
BanII GRGCYC 1 cut(s) 630
BarI GAAGNNNNNNTAC 6 cut(s) 106, 138, 876, 908, 1226, 1258
BauI CACGAG 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 1290
BbvI GCAGC 8 cut(s) 79, 147, 183, 187, 782, 785, 874, 1162
BccI CCATC 4 cut(s) 365, 912, 1382, 1487
BceAI ACGGC 1 cut(s) 761
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 631
BclI TGATCA 2 cut(s) 286, 808
BcoDI GTCTC 1 cut(s) 748
BfaI CTAG 5 cut(s) 369, 452, 761, 1107, 1322
BfrI CTTAAG 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 965
BisI GCNGC 9 cut(s) 93, 133, 136, 176, 197, 771, 774, 888, 1176
BlsI GCNGC 9 cut(s) 94, 134, 137, 177, 198, 772, 775, 889, 1177
Bme1390I CCNGG 1 cut(s) 631
Bme18I GGWCC 2 cut(s) 217, 259
BmeRI GACNNNNNGTC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 217, 259
BmiI GGNNCC 1 cut(s) 930
BmrFI CCNGG 1 cut(s) 631
BmsI GCATC 6 cut(s) 27, 327, 331, 856, 1111, 1479
BpmI CTGGAG 1 cut(s) 652
Bpu14I TTCGAA 2 cut(s) 188, 1437
BpuEI CTTGAG 2 cut(s) 1073, 1331
Bsa29I ATCGAT 1 cut(s) 982
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 629
BsaWI WCCGGW 2 cut(s) 9, 710
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 4 cut(s) 183, 614, 851, 1532
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 631
BseCI ATCGAT 1 cut(s) 982
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 5 cut(s) 18, 316, 923, 1288, 1393
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 1533
BseNI ACTGG 4 cut(s) 183, 614, 851, 1532
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 8 cut(s) 79, 147, 183, 187, 782, 785, 874, 1162
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 710
BshVI ATCGAT 1 cut(s) 982
BsiHKAI GWGCWC 1 cut(s) 1290
BsiSI CCGG 3 cut(s) 10, 146, 711
BslFI GGGAC 4 cut(s) 79, 177, 244, 676
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 748
BsmFI GGGAC 4 cut(s) 79, 177, 244, 676
BsnI GGCC 1 cut(s) 39
Bsp119I TTCGAA 2 cut(s) 188, 1437
Bsp1286I GDGCHC 3 cut(s) 630, 858, 1290
BspACI CCGC 4 cut(s) 133, 173, 953, 1059
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 1532
BspDI ATCGAT 1 cut(s) 982
BspHI TCATGA 2 cut(s) 321, 1372
BspLI GGNNCC 1 cut(s) 930
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 5 cut(s) 501, 620, 923, 936, 1289
BspT104I TTCGAA 2 cut(s) 188, 1437
BspTI CTTAAG 1 cut(s) 532
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 4 cut(s) 183, 614, 851, 1532
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 629
BssNI GRCGYC 1 cut(s) 233
BssSI CACGAG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 6 cut(s) 221, 524, 840, 944, 1135, 1457
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 233
BstAFI CTTAAG 1 cut(s) 532
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 2 cut(s) 188, 1437
BstDEI CTNAG 3 cut(s) 53, 392, 1519
BstF5I GGATG 5 cut(s) 18, 316, 923, 1288, 1393
BstMAI GTCTC 1 cut(s) 748
BstMWI GCNNNNNNNGC 6 cut(s) 175, 534, 770, 896, 1067, 1076
BstNI CCWGG 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 629
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 8 cut(s) 79, 147, 183, 187, 782, 785, 874, 1162
BstX2I RGATCY 3 cut(s) 493, 928, 965
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 3 cut(s) 493, 928, 965
Bsu15I ATCGAT 1 cut(s) 982
BsuRI GGCC 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 982
BtsCI GGATG 5 cut(s) 18, 316, 923, 1288, 1393
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 5 cut(s) 274, 844, 1266, 1462, 1525
BveI ACCTGC 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 2 cut(s) 321, 1372
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 217, 259
ClaI ATCGAT 1 cut(s) 982
CseI GACGC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 60, 301, 1243
CspAI ACCGGT 1 cut(s) 710
CviAII CATG 5 cut(s) 322, 675, 878, 961, 1373
CviQI GTAC 3 cut(s) 60, 301, 1243
DdeI CTNAG 3 cut(s) 53, 392, 1519
DriI GACNNNNNGTC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 488
Eam1105I GACNNNNNGTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 630
Eco32I GATATC 1 cut(s) 1508
Eco47I GGWCC 2 cut(s) 217, 259
Eco57I CTGAAG 2 cut(s) 112, 1164
EcoRI GAATTC 2 cut(s) 1093, 1209
EcoRII CCWGG 1 cut(s) 629
EcoRV GATATC 1 cut(s) 1508
EcoT38I GRGCYC 1 cut(s) 630
FaeI CATG 5 cut(s) 325, 678, 881, 964, 1376
FaqI GGGAC 4 cut(s) 79, 177, 244, 676
FatI CATG 5 cut(s) 321, 674, 877, 960, 1372
FbaI TGATCA 2 cut(s) 286, 808
Fnu4HI GCNGC 9 cut(s) 93, 133, 136, 176, 197, 771, 774, 888, 1176
FokI GGATG 5 cut(s) 5, 323, 930, 1295, 1400
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 9 cut(s) 93, 133, 136, 176, 197, 771, 774, 888, 1176
FspBI CTAG 5 cut(s) 369, 452, 761, 1107, 1322
GluI GCNGC 9 cut(s) 93, 133, 136, 176, 197, 771, 774, 888, 1176
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 10, 146, 711
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 5 cut(s) 325, 678, 881, 964, 1376
HincII GTYRAC 1 cut(s) 1396
HindII GTYRAC 1 cut(s) 1396
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 4 cut(s) 351, 417, 1338, 1497
HpaI GTTAAC 1 cut(s) 1396
HpaII CCGG 3 cut(s) 10, 146, 711
HphI GGTGA 3 cut(s) 605, 956, 1325
Hpy166II GTNNAC 3 cut(s) 550, 996, 1396
Hpy188I TCNGA 6 cut(s) 688, 813, 865, 977, 1012, 1183
Hpy8I GTNNAC 3 cut(s) 550, 996, 1396
HpyAV CCTTC 9 cut(s) 136, 184, 199, 407, 808, 1199, 1228, 1272, 1396
HpyCH4III ACNGT 6 cut(s) 221, 524, 840, 944, 1135, 1457
HpyCH4IV ACGT 3 cut(s) 112, 665, 1398
HpyCH4V TGCA 5 cut(s) 199, 671, 708, 1079, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 534, 770, 896, 1067, 1076
HpyF3I CTNAG 3 cut(s) 53, 392, 1519
HpySE526I ACGT 3 cut(s) 112, 665, 1398
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 5 cut(s) 325, 678, 881, 964, 1376
Ksp22I TGATCA 2 cut(s) 286, 808
KspAI GTTAAC 1 cut(s) 1396
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 8 cut(s) 79, 147, 183, 187, 782, 785, 874, 1162
LweI GCATC 6 cut(s) 27, 327, 331, 856, 1111, 1479
MaeI CTAG 5 cut(s) 369, 452, 761, 1107, 1322
MaeII ACGT 3 cut(s) 112, 665, 1398
MaeIII GTNAC 5 cut(s) 23, 108, 375, 475, 1451
MboII GAAGA 6 cut(s) 262, 475, 488, 524, 893, 1361
MflI RGATCY 3 cut(s) 493, 928, 965
MhlI GDGCHC 3 cut(s) 630, 858, 1290
MlyI GAGTC 1 cut(s) 1491
MmeI TCCRAC 1 cut(s) 955
MnlI CCTC 8 cut(s) 50, 208, 301, 389, 446, 549, 1092, 1306
MroXI GAANNNNTTC 1 cut(s) 1209
MseI TTAA 6 cut(s) 533, 603, 620, 935, 1019, 1395
MslI CAYNNNNRTG 2 cut(s) 267, 679
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 3 cut(s) 10, 146, 711
MspR9I CCNGG 1 cut(s) 631
MvaI CCWGG 1 cut(s) 631
MwoI GCNNNNNNNGC 6 cut(s) 175, 534, 770, 896, 1067, 1076
NlaIII CATG 5 cut(s) 325, 678, 881, 964, 1376
NlaIV GGNNCC 1 cut(s) 930
NmuCI GTSAC 2 cut(s) 108, 475
NspV TTCGAA 2 cut(s) 188, 1437
OliI CACNNNNGTG 1 cut(s) 267
PagI TCATGA 2 cut(s) 321, 1372
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 1209
PfeI GAWTC 3 cut(s) 351, 417, 1338
PflMI CCANNNNNTGG 1 cut(s) 363
PinAI ACCGGT 1 cut(s) 710
PkrI GCNGC 9 cut(s) 94, 134, 137, 177, 198, 772, 775, 889, 1177
PleI GAGTC 1 cut(s) 1491
PpsI GAGTC 1 cut(s) 1491
Ppu21I YACGTR 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 930
PspPI GGNCC 2 cut(s) 217, 259
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 493, 928, 965
RsaI GTAC 3 cut(s) 61, 302, 1244
RsaNI GTAC 3 cut(s) 60, 301, 1243
RseI CAYNNNNRTG 2 cut(s) 267, 679
SaqAI TTAA 6 cut(s) 533, 603, 620, 935, 1019, 1395
SatI GCNGC 9 cut(s) 93, 133, 136, 176, 197, 771, 774, 888, 1176
Sau96I GGNCC 2 cut(s) 217, 259
SchI GAGTC 1 cut(s) 1491
ScrFI CCNGG 1 cut(s) 631
SduI GDGCHC 3 cut(s) 630, 858, 1290
SfaNI GCATC 6 cut(s) 27, 327, 331, 856, 1111, 1479
SfuI TTCGAA 2 cut(s) 188, 1437
SgrAI CRCCGGYG 1 cut(s) 710
SinI GGWCC 2 cut(s) 217, 259
SmiMI CAYNNNNRTG 2 cut(s) 267, 679
SmlI CTYRAG 3 cut(s) 532, 1088, 1310
SmoI CTYRAG 3 cut(s) 532, 1088, 1310
SsiI CCGC 4 cut(s) 133, 173, 953, 1059
SspI AATATT 1 cut(s) 425
SspMI CTAG 5 cut(s) 369, 452, 761, 1107, 1322
StyD4I CCNGG 1 cut(s) 629
TaaI ACNGT 6 cut(s) 221, 524, 840, 944, 1135, 1457
TaiI ACGT 3 cut(s) 115, 668, 1401
TaqI TCGA 6 cut(s) 188, 982, 1213, 1341, 1354, 1437
TatI WGTACW 2 cut(s) 59, 1242
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 351, 417, 1338
Tru1I TTAA 6 cut(s) 533, 603, 620, 935, 1019, 1395
Tru9I TTAA 6 cut(s) 533, 603, 620, 935, 1019, 1395
TscAI CASTG 5 cut(s) 274, 851, 1273, 1462, 1532
TseFI GTSAC 2 cut(s) 108, 475
TseI GCWGC 8 cut(s) 92, 135, 175, 196, 770, 773, 887, 1175
Tsp45I GTSAC 2 cut(s) 108, 475
TspDTI ATGAA 7 cut(s) 144, 338, 531, 894, 1017, 1361, 1389
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 5 cut(s) 274, 851, 1273, 1462, 1532
Van91I CCANNNNNTGG 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 217, 259
XapI RAATTY 5 cut(s) 587, 718, 1093, 1209, 1537
XbaI TCTAGA 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 1209
XspI CTAG 5 cut(s) 369, 452, 761, 1107, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.