Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005827

Physical Location & Seq

Genomic Coordinates Reverse (-)

33701590 .. 33703454

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1207200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCAGCTTCTTGGCACGCTCTCACCGGCCTCGGAGCTCTCTCCGTAACCGTAAAACAGCGCCGTCTAATTCCTTCACCACCATCAGTTGCTCACTGCTCTCTCGCCAGCTTCCAGGAACTGTCGACGGAGCCTCCGCGAATCCAAACCACCGGCGCCGCTATAAGCTTGAAAGACGCCCGCAAGACCGAGAAGCAAAACGACGTCGTTCCCGATCATAACCAAGGCGAAGAAGAAGAAGAAGACCATGGAATTTCCAAAATCCCGGTCCCCAGGCAGAAGTACATCCCCGTTCCCAAGGCCGAGCTTCTCGACGGCGTCGTTTCGAACTTGTTCAAGGACAGCAACGGCGAAGACGACGATGAATTGCAGAGCTTTCTGCTTCTCTCTTCGTGCTTGGACTCCATTCTTCACGCCGAGCACAAGGGAATCTTGGAAGAAATGCGAGCTGATTATTTCAAATCGAATTCCGCGGAGAACAAGCAAAATGGTGATTTGGTTGATGGGCAGAGCTCGGATTCTGCTAATGGGAGTGTCATCAATGGAGTTGAGAGCATTGAGGCAAATGAGGATGAAAAAAATGAAGGTGGAAACGCAATGCCGCAGTTAGATTATGTTTTGGAGTTGCGAAAACTCTTGGGTTCTCCGGCTAAGAACGTTGAGAGAGTTGCTGTTTCCACTCGTTTCCAGCGTTCTTTCATGCAACTTCTTAATGATGCTCAGTTTGAAGAACTATCCGAAAGGGATTTAATGCTGACTTCTGCATTGAACACAGATTATCTCCTTACTTTGCCCATATATGTCGACTGGAAGAAGGCATCTGAGTCCAATGCAATTATATTCAGGATATGCAACAGAGAGGGGGAGAAGGGTCTACTACTTGTAGAAAAACTGGAGTACATACAGTCCAAAATTCTACAGGGAACCTTCTTCATCGTATCAAAACCGTTGGCGAAATTTGGGAGCTGGATAGTTGAGGTCATTGTGTTTTTTCAGAACAAAGGCTGCCTTCATCCTGGGGCAGCATCCTTCAGGCATTCCAAGTTGCTTGCGAAACACCAGAAGTACAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

359

Amino Acids

39.8

Weight (kDa)

5.41

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46915 AT2G46915
fragaria_vesca	FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970
malus_domestica	MD05G1207200.v1.1 MD17G1162400.v1.1
prunus_persica	Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1
pyrus_communis	pycom17g15550
rosa_chinensis	RchiOBHm_Chr2g0149491
rosa_laevigata	RLG00000020411
rosa_multiflora	Rmu_co8126932.1_g000001 Rmu_sc0006867.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098090
rosa_rugosa	Rorug02G0412000
rosa_samantha	Rh2AG471900 Rh2BG484100 Rh2CG457800 Rh2DG493300 Rh4DG241700 Rh7AG209900
rosa_wichuraiana	Rw2G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	3 cut(s)	125, 804, 874
AccII	CGCG	2 cut(s)	139, 473
AciI	CCGC	6 cut(s)	137, 159, 181, 471, 473, 602
AclI	AACGTT	1 cut(s)	657
AcsI	RAATTY	4 cut(s)	252, 466, 912, 956
AcuI	CTGAAG	1 cut(s)	1015
AcyI	GRCGYC	4 cut(s)	156, 177, 204, 318
AfaI	GTAC	3 cut(s)	284, 899, 1067
AgsI	TTSAA	5 cut(s)	172, 337, 460, 728, 769
AjnI	CCWGG	3 cut(s)	114, 272, 1015
AluBI	AGCT	9 cut(s)	8, 38, 111, 168, 307, 375, 449, 513, 966
AluI	AGCT	9 cut(s)	8, 38, 111, 168, 307, 375, 449, 513, 966
Alw21I	GWGCWC	3 cut(s)	40, 423, 515
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	28, 300
ApeKI	GCWGC	2 cut(s)	1005, 1022
ApoI	RAATTY	4 cut(s)	252, 466, 912, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	63, 158
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	16, 69, 503
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	40, 515
BbsI	GAAGAC	2 cut(s)	249, 360
Bbv12I	GWGCWC	3 cut(s)	40, 423, 515
BbvI	GCAGC	2 cut(s)	992, 1034
BccI	CCATC	2 cut(s)	91, 497
BceAI	ACGGC	3 cut(s)	48, 331, 364
BciT130I	CCWGG	3 cut(s)	116, 274, 1017
BcnI	CCSGG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	917
BfoI	RGCGCY	2 cut(s)	64, 159
BisI	GCNGC	4 cut(s)	159, 602, 1006, 1023
BlsI	GCNGC	4 cut(s)	160, 603, 1007, 1024
Bme1390I	CCNGG	4 cut(s)	116, 266, 274, 1017
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	4 cut(s)	132, 157, 270, 925
BmrFI	CCNGG	4 cut(s)	116, 266, 274, 1017
BmsI	GCATC	3 cut(s)	706, 827, 1034
BpiI	GAAGAC	2 cut(s)	249, 360
BpmI	CTGGAG	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	4 cut(s)	156, 177, 204, 318
BsaJI	CCNNGG	7 cut(s)	31, 223, 247, 272, 297, 471, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse118I	RCCGGY	2 cut(s)	26, 152
Bse1I	ACTGG	2 cut(s)	812, 897
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	116, 274, 1017
BseDI	CCNNGG	7 cut(s)	31, 223, 247, 272, 297, 471, 1016
BseGI	GGATG	4 cut(s)	285, 577, 1012, 1025
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	734, 813
BseNI	ACTGG	2 cut(s)	812, 897
BseXI	GCAGC	2 cut(s)	992, 1034
Bsh1236I	CGCG	2 cut(s)	139, 473
BshFI	GGCC	2 cut(s)	30, 302
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	3 cut(s)	40, 423, 515
BsiSI	CCGG	4 cut(s)	27, 153, 266, 647
BslFI	GGGAC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	2 cut(s)	30, 302
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	40, 423, 515
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	6 cut(s)	137, 159, 181, 471, 473, 602
BspANI	GGCC	2 cut(s)	30, 302
BspCNI	CTCAG	2 cut(s)	733, 814
BspFNI	CGCG	2 cut(s)	139, 473
BspLI	GGNNCC	4 cut(s)	132, 157, 270, 925
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	2 cut(s)	26, 152
BsrI	ACTGG	2 cut(s)	812, 897
BssAI	RCCGGY	2 cut(s)	26, 152
BssECI	CCNNGG	7 cut(s)	31, 223, 247, 272, 297, 471, 1016
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	4 cut(s)	156, 177, 204, 318
BssT1I	CCWWGG	3 cut(s)	223, 247, 297
Bst2UI	CCWGG	3 cut(s)	116, 274, 1017
Bst4CI	ACNGT	4 cut(s)	52, 123, 906, 948
Bst6I	CTCTTC	1 cut(s)	394
BstACI	GRCGYC	4 cut(s)	156, 177, 204, 318
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	5 cut(s)	18, 109, 181, 447, 1050
BstDEI	CTNAG	3 cut(s)	651, 720, 822
BstDSI	CCRYGG	2 cut(s)	247, 471
BstF5I	GGATG	4 cut(s)	285, 577, 1012, 1025
BstFNI	CGCG	2 cut(s)	139, 473
BstH2I	RGCGCY	2 cut(s)	64, 159
BstHHI	GCGC	2 cut(s)	63, 158
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	3 cut(s)	116, 274, 1017
BstSCI	CCNGG	4 cut(s)	114, 264, 272, 1015
BstSFI	CTRYAG	1 cut(s)	917
BstUI	CGCG	2 cut(s)	139, 473
BstV1I	GCAGC	2 cut(s)	992, 1034
BstV2I	GAAGAC	2 cut(s)	249, 360
BsuRI	GGCC	2 cut(s)	30, 302
BtgI	CCRYGG	2 cut(s)	247, 471
BtsCI	GGATG	4 cut(s)	285, 577, 1012, 1025
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	5 cut(s)	18, 109, 181, 447, 1050
CaiI	CAGNNNCTG	1 cut(s)	121
CfoI	GCGC	2 cut(s)	63, 158
Cfr10I	RCCGGY	2 cut(s)	26, 152
Cfr13I	GGNCC	1 cut(s)	268
Cfr42I	CCGCGG	1 cut(s)	474
CseI	GACGC	2 cut(s)	185, 307
Csp6I	GTAC	3 cut(s)	283, 898, 1066
CviAII	CATG	2 cut(s)	248, 700
CviQI	GTAC	3 cut(s)	283, 898, 1066
DdeI	CTNAG	3 cut(s)	651, 720, 822
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Ecl136II	GAGCTC	2 cut(s)	38, 513
Eco130I	CCWWGG	3 cut(s)	223, 247, 297
Eco24I	GRGCYC	2 cut(s)	40, 515
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	2 cut(s)	38, 513
Eco57I	CTGAAG	1 cut(s)	1015
EcoICRI	GAGCTC	2 cut(s)	38, 513
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	114, 272, 1015
EcoT14I	CCWWGG	3 cut(s)	223, 247, 297
EcoT38I	GRGCYC	2 cut(s)	40, 515
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	3 cut(s)	223, 247, 297
FaeI	CATG	2 cut(s)	251, 703
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 993, 1025
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	247, 699
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	3 cut(s)	125, 804, 874
Fnu4HI	GCNGC	4 cut(s)	159, 602, 1006, 1023
FokI	GGATG	4 cut(s)	272, 584, 999, 1012
FriOI	GRGCYC	2 cut(s)	40, 515
Fsp4HI	GCNGC	4 cut(s)	159, 602, 1006, 1023
GlaI	GCGC	2 cut(s)	62, 157
GluI	GCNGC	4 cut(s)	159, 602, 1006, 1023
GsuI	CTGGAG	1 cut(s)	914
HaeII	RGCGCY	2 cut(s)	64, 159
HaeIII	GGCC	2 cut(s)	30, 302
HapII	CCGG	4 cut(s)	27, 153, 266, 647
HgaI	GACGC	2 cut(s)	185, 307
HhaI	GCGC	2 cut(s)	63, 158
Hin1I	GRCGYC	4 cut(s)	156, 177, 204, 318
Hin1II	CATG	2 cut(s)	251, 703
Hin6I	GCGC	2 cut(s)	61, 156
HinP1I	GCGC	2 cut(s)	61, 156
HincII	GTYRAC	2 cut(s)	126, 805
HindII	GTYRAC	2 cut(s)	126, 805
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	5 cut(s)	141, 401, 429, 518, 824
HpaII	CCGG	4 cut(s)	27, 153, 266, 647
HphI	GGTGA	3 cut(s)	16, 69, 503
Hpy166II	GTNNAC	3 cut(s)	126, 805, 875
Hpy188I	TCNGA	5 cut(s)	35, 517, 739, 823, 996
Hpy188III	TCNNGA	3 cut(s)	212, 311, 844
Hpy8I	GTNNAC	3 cut(s)	126, 805, 875
Hpy99I	CGWCG	6 cut(s)	130, 206, 209, 317, 323, 362
HpyAV	CCTTC	7 cut(s)	84, 578, 808, 862, 937, 1019, 1039
HpyCH4III	ACNGT	4 cut(s)	52, 123, 906, 948
HpyCH4IV	ACGT	2 cut(s)	204, 657
HpyCH4V	TGCA	5 cut(s)	370, 703, 764, 833, 852
HpyF3I	CTNAG	3 cut(s)	651, 720, 822
HpySE526I	ACGT	2 cut(s)	204, 657
Hsp92I	GRCGYC	4 cut(s)	156, 177, 204, 318
Hsp92II	CATG	2 cut(s)	251, 703
HspAI	GCGC	2 cut(s)	61, 156
KasI	GGCGCC	1 cut(s)	155
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	35, 130, 963
Lsp1109I	GCAGC	2 cut(s)	992, 1034
LweI	GCATC	3 cut(s)	706, 827, 1034
MaeII	ACGT	2 cut(s)	204, 657
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MhlI	GDGCHC	3 cut(s)	40, 423, 515
MluCI	AATT	7 cut(s)	69, 252, 365, 466, 834, 912, 956
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	395, 833
MnlI	CCTC	6 cut(s)	41, 144, 553, 562, 853, 970
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	711, 749
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	4 cut(s)	27, 153, 266, 647
MspR9I	CCNGG	4 cut(s)	116, 266, 274, 1017
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	116, 274, 1017
MvnI	CGCG	2 cut(s)	139, 473
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	251, 703
NlaIV	GGNNCC	4 cut(s)	132, 157, 270, 925
NmeAIII	GCCGAG	2 cut(s)	328, 442
NspV	TTCGAA	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	4 cut(s)	210, 318, 354, 688
PctI	GAATGC	1 cut(s)	1036
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	141, 429, 518
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	160, 603, 1007, 1024
PleI	GAGTC	2 cut(s)	395, 832
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	2 cut(s)	395, 832
Psp124BI	GAGCTC	2 cut(s)	40, 515
Psp1406I	AACGTT	1 cut(s)	657
Psp6I	CCWGG	3 cut(s)	114, 272, 1015
PspGI	CCWGG	3 cut(s)	114, 272, 1015
PspN4I	GGNNCC	4 cut(s)	132, 157, 270, 925
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	3 cut(s)	284, 899, 1067
RsaNI	GTAC	3 cut(s)	283, 898, 1066
SacI	GAGCTC	2 cut(s)	40, 515
SacII	CCGCGG	1 cut(s)	474
SalI	GTCGAC	2 cut(s)	124, 803
SaqAI	TTAA	2 cut(s)	711, 749
SatI	GCNGC	4 cut(s)	159, 602, 1006, 1023
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	395, 833
ScrFI	CCNGG	4 cut(s)	116, 266, 274, 1017
SduI	GDGCHC	3 cut(s)	40, 423, 515
SfaNI	GCATC	3 cut(s)	706, 827, 1034
SfcI	CTRYAG	1 cut(s)	917
SfoI	GGCGCC	1 cut(s)	157
Sfr303I	CCGCGG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	326
SgrAI	CRCCGGYG	1 cut(s)	152
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	7 cut(s)	69, 252, 365, 466, 834, 912, 956
SsiI	CCGC	6 cut(s)	137, 159, 181, 471, 473, 602
SspDI	GGCGCC	1 cut(s)	155
SstI	GAGCTC	2 cut(s)	40, 515
StyD4I	CCNGG	4 cut(s)	114, 264, 272, 1015
StyI	CCWWGG	3 cut(s)	223, 247, 297
TaaI	ACNGT	4 cut(s)	52, 123, 906, 948
TaiI	ACGT	2 cut(s)	207, 660
TaqI	TCGA	5 cut(s)	125, 312, 326, 464, 804
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	7 cut(s)	69, 252, 365, 466, 834, 912, 956
TatI	WGTACW	3 cut(s)	282, 897, 1065
TauI	GCSGC	2 cut(s)	161, 604
TfiI	GAWTC	3 cut(s)	141, 429, 518
Tru1I	TTAA	2 cut(s)	711, 749
Tru9I	TTAA	2 cut(s)	711, 749
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	2 cut(s)	1005, 1022
TspDTI	ATGAA	6 cut(s)	378, 588, 597, 688, 922, 1001
TspGWI	ACGGA	2 cut(s)	34, 143
TspRI	CASTG	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	4 cut(s)	252, 466, 912, 956
XmiI	GTMKAC	3 cut(s)	125, 804, 874
XmnI	GAANNNNTTC	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.