Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006867.1

Orthogroup ID

OG0005827

Physical Location & Seq

Genomic Coordinates Forward (+)

29369 .. 30143

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006867.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgtcagcttcttaccacactctcaccagcctcaccgctctctccttgacctcaaaacgccgtcgttctactccttcaacacctcactcgctcacactcgctcgctcttccctcaccggcttccgagaaatctccaccgagcctaagcaaccccaaaccgacgctgtaaacctcacagaagcgccgcttcttaagaagcagaacgacgtcgtcccgcagaagaagaagcgagacgatgaagacgaagatggagatgaggcgatttcgaagattccggttcccaggcagaagtacatcccggtctccaaggccgagctgctagacggcgtcgtttcgaatctcttccgagaccagaacggcgatgatttggagcagtttcttcttctttcatcgtgcttggattcgattcttcatgccgagcacaaaaacattctggaggaaatgcgagccgattattcggaacccaactccatggagtacaagcaagcaattgaagagttagcaatggctaatgggcagggctcggattctgctgaaggaatcaatggagttgggagtgaagaaaatgaagctgaaattccgttcgattatgttgagggattgaggaaactcttgggttcttcagctaaggacgtcaaaaggtattaccaatttgttttggcactaatctactttctgtttattcaattgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

231

Amino Acids

25.85

Weight (kDa)

4.91

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46915 AT2G46915
fragaria_vesca	FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970
malus_domestica	MD05G1207200.v1.1 MD17G1162400.v1.1
prunus_persica	Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1
pyrus_communis	pycom17g15550
rosa_chinensis	RchiOBHm_Chr2g0149491
rosa_laevigata	RLG00000020411
rosa_multiflora	Rmu_co8126932.1_g000001 Rmu_sc0006867.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098090
rosa_rugosa	Rorug02G0412000
rosa_samantha	Rh2AG471900 Rh2BG484100 Rh2CG457800 Rh2DG493300 Rh4DG241700 Rh7AG209900
rosa_wichuraiana	Rw2G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	210, 636
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	3 cut(s)	36, 185, 215
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	555, 606
AcyI	GRCGYC	3 cut(s)	207, 327, 633
AfaI	GTAC	2 cut(s)	293, 479
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	78, 494, 686
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	8, 316, 572, 626
AluI	AGCT	4 cut(s)	8, 316, 572, 626
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	225, 307, 342
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	16, 25, 106
AsuII	TTCGAA	2 cut(s)	266, 335
BanII	GRGCYC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	3 cut(s)	45, 340, 373
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	225, 307, 342
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	185, 317
BlsI	GCNGC	2 cut(s)	186, 318
Bme1390I	CCNGG	2 cut(s)	283, 299
BmiI	GGNNCC	2 cut(s)	279, 462
BmrFI	CCNGG	2 cut(s)	283, 299
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	144, 627
Bpu14I	TTCGAA	2 cut(s)	266, 335
BpuMI	CCSGG	1 cut(s)	299
BsaHI	GRCGYC	3 cut(s)	207, 327, 633
BsaI	GGTCTC	2 cut(s)	307, 342
BsaJI	CCNNGG	3 cut(s)	281, 306, 471
BsaWI	WCCGGW	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	3 cut(s)	281, 306, 471
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	303
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	3 cut(s)	117, 275, 299
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	3 cut(s)	225, 307, 342
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	2 cut(s)	307, 342
Bsp119I	TTCGAA	2 cut(s)	266, 335
Bsp1286I	GDGCHC	2 cut(s)	423, 524
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	3 cut(s)	36, 185, 215
BspANI	GGCC	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	279, 462
BspQI	GCTCTTC	1 cut(s)	112
BspT104I	TTCGAA	2 cut(s)	266, 335
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	307, 342
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	281, 306, 471
BssNI	GRCGYC	3 cut(s)	207, 327, 633
BssT1I	CCWWGG	2 cut(s)	306, 471
Bst2UI	CCWGG	1 cut(s)	283
Bst6I	CTCTTC	3 cut(s)	112, 347, 489
BstACI	GRCGYC	3 cut(s)	207, 327, 633
BstAFI	CTTAAG	1 cut(s)	191
BstBI	TTCGAA	2 cut(s)	266, 335
BstC8I	GCNNGC	3 cut(s)	103, 447, 486
BstDEI	CTNAG	2 cut(s)	144, 627
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	3 cut(s)	225, 307, 342
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	281, 297
BstV1I	GCAGC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	103, 447, 486
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	116
CseI	GACGC	2 cut(s)	170, 316
Csp6I	GTAC	2 cut(s)	292, 478
CviAII	CATG	2 cut(s)	413, 472
CviQI	GTAC	2 cut(s)	292, 478
DdeI	CTNAG	2 cut(s)	144, 627
Eam1104I	CTCTTC	3 cut(s)	112, 347, 489
EarI	CTCTTC	3 cut(s)	112, 347, 489
Eco130I	CCWWGG	2 cut(s)	306, 471
Eco24I	GRGCYC	1 cut(s)	524
Eco31I	GGTCTC	2 cut(s)	307, 342
Eco57I	CTGAAG	2 cut(s)	555, 606
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	306, 471
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	2 cut(s)	306, 471
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	2 cut(s)	416, 475
FaiI	YATR	3 cut(s)	414, 473, 591
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	412, 471
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	185, 317
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	185, 317
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	185, 317
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	117, 275, 299
HgaI	GACGC	2 cut(s)	170, 316
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	3 cut(s)	207, 327, 633
Hin1II	CATG	2 cut(s)	416, 475
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	6 cut(s)	271, 337, 401, 406, 527, 540
HpaII	CCGG	3 cut(s)	117, 275, 299
HphI	GGTGA	3 cut(s)	16, 25, 106
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	125, 347, 460, 526
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	5 cut(s)	66, 164, 209, 212, 332
HpyAV	CCTTC	2 cut(s)	84, 530
HpyCH4IV	ACGT	2 cut(s)	207, 633
HpyF3I	CTNAG	2 cut(s)	144, 627
HpySE526I	ACGT	2 cut(s)	207, 633
Hsp92I	GRCGYC	3 cut(s)	207, 327, 633
Hsp92II	CATG	2 cut(s)	416, 475
HspAI	GCGC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	40, 130, 268, 288, 295, 312, 365, 419, 503
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	207, 633
MbiI	CCGCTC	1 cut(s)	38
MfeI	CAATTG	2 cut(s)	489, 686
MhlI	GDGCHC	2 cut(s)	423, 524
MluCI	AATT	4 cut(s)	489, 576, 650, 686
MnlI	CCTC	9 cut(s)	41, 61, 93, 122, 182, 250, 430, 589, 597
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	192, 694
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	3 cut(s)	117, 275, 299
MspR9I	CCNGG	2 cut(s)	283, 299
MunI	CAATTG	2 cut(s)	489, 686
MvaI	CCWGG	1 cut(s)	283
NciI	CCSGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	471
NlaIII	CATG	2 cut(s)	416, 475
NlaIV	GGNNCC	2 cut(s)	279, 462
NmeAIII	GCCGAG	2 cut(s)	337, 442
NspV	TTCGAA	2 cut(s)	266, 335
PciSI	GCTCTTC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	6 cut(s)	271, 337, 401, 406, 527, 540
PflFI	GACNNNGTC	2 cut(s)	209, 326
PkrI	GCNGC	2 cut(s)	186, 318
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	279, 462
PsyI	GACNNNGTC	2 cut(s)	209, 326
RsaI	GTAC	2 cut(s)	293, 479
RsaNI	GTAC	2 cut(s)	292, 478
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	192, 694
SatI	GCNGC	2 cut(s)	185, 317
ScrFI	CCNGG	2 cut(s)	283, 299
SduI	GDGCHC	2 cut(s)	423, 524
SfuI	TTCGAA	2 cut(s)	266, 335
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	489, 576, 650, 686
SsiI	CCGC	3 cut(s)	36, 185, 215
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	281, 297
StyI	CCWWGG	2 cut(s)	306, 471
TaiI	ACGT	2 cut(s)	210, 636
TaqI	TCGA	4 cut(s)	266, 335, 404, 585
TasI	AATT	4 cut(s)	489, 576, 650, 686
TatI	WGTACW	2 cut(s)	291, 477
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	6 cut(s)	271, 337, 401, 406, 527, 540
Tru1I	TTAA	2 cut(s)	192, 694
Tru9I	TTAA	2 cut(s)	192, 694
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	252, 378, 401, 582
TspGWI	ACGGA	1 cut(s)	570
Tth111I	GACNNNGTC	2 cut(s)	209, 326
Vha464I	CTTAAG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	2 cut(s)	208, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.