Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005827

Physical Location & Seq

Genomic Coordinates Forward (+)

45168898 .. 45176748

Gene Structure 7851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCATCTCACCTTATCAACAGATATTGTTATCCTTTTTAAACTACTATGTTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCATAGCCACCACCCGCCTCGAGCTCACCTCCTCCGCCCTCCATGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCCAGGACCCTGACCAGGTCCTCGTCTATGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGAAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

209

Amino Acids

23.34

Weight (kDa)

6.83

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	87 - 202	1.8e-28	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46915 AT2G46915
fragaria_vesca	FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970
malus_domestica	MD05G1207200.v1.1 MD17G1162400.v1.1
prunus_persica	Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1
pyrus_communis	pycom17g15550
rosa_chinensis	RchiOBHm_Chr2g0149491
rosa_laevigata	RLG00000020411
rosa_multiflora	Rmu_co8126932.1_g000001 Rmu_sc0006867.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098090
rosa_rugosa	Rorug02G0412000
rosa_samantha	Rh2AG471900 Rh2BG484100 Rh2CG457800 Rh2DG493300 Rh4DG241700 Rh7AG209900
rosa_wichuraiana	Rw2G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AciI	CCGC	5 cut(s)	295, 310, 330, 387, 499
AcuI	CTGAAG	2 cut(s)	197, 623
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	167, 232
AjnI	CCWGG	3 cut(s)	273, 414, 426
AluBI	AGCT	4 cut(s)	106, 214, 319, 578
AluI	AGCT	4 cut(s)	106, 214, 319, 578
Alw21I	GWGCWC	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	418, 430
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	418, 430
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	3 cut(s)	175, 199, 604
BciT130I	CCWGG	3 cut(s)	275, 416, 428
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	618
BlpI	GCTNAGC	1 cut(s)	215
Bme1390I	CCNGG	4 cut(s)	275, 405, 416, 428
Bme18I	GGWCC	2 cut(s)	418, 430
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	418, 430
BmiI	GGNNCC	4 cut(s)	138, 420, 448, 615
BmrFI	CCNGG	4 cut(s)	275, 405, 416, 428
BmsI	GCATC	2 cut(s)	13, 360
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	3 cut(s)	257, 278, 398
Bpu1102I	GCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	462, 500
BpuMI	CCSGG	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	2 cut(s)	359, 449
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	3 cut(s)	275, 416, 428
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	3 cut(s)	213, 316, 503
BseYI	CCCAGC	1 cut(s)	578
Bsh1285I	CGRYCG	1 cut(s)	499
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	360, 405, 450
BslFI	GGGAC	2 cut(s)	362, 386
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	362, 386
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	169, 253, 504
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	5 cut(s)	295, 310, 330, 387, 499
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	138, 420, 448, 615
BspT104I	TTCGAA	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	446
BsrFI	RCCGGY	2 cut(s)	359, 449
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	2 cut(s)	359, 449
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	3 cut(s)	169, 253, 504
Bst2UI	CCWGG	3 cut(s)	275, 416, 428
Bst4CI	ACNGT	2 cut(s)	125, 627
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	215, 552
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	172, 256, 507
BstMBI	GATC	3 cut(s)	169, 253, 504
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	3 cut(s)	275, 416, 428
BstNSI	RCATGY	2 cut(s)	164, 475
BstSCI	CCNGG	4 cut(s)	273, 403, 414, 426
BstSFI	CTRYAG	1 cut(s)	618
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	130, 243
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	359, 449
Cfr13I	GGNCC	2 cut(s)	418, 430
CsiI	ACCWGGT	1 cut(s)	426
CviAII	CATG	3 cut(s)	161, 338, 472
CviJI	RGCY	8 cut(s)	106, 214, 302, 319, 453, 482, 578, 614
CviKI_1	RGCY	8 cut(s)	106, 214, 302, 319, 453, 482, 578, 614
DdeI	CTNAG	2 cut(s)	215, 552
DpnI	GATC	3 cut(s)	171, 255, 506
DpnII	GATC	3 cut(s)	169, 253, 504
DraI	TTTAAA	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	418, 430
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	197, 623
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	2 cut(s)	418, 430
EcoRII	CCWGG	3 cut(s)	273, 414, 426
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	3 cut(s)	164, 341, 475
FaiI	YATR	8 cut(s)	49, 156, 162, 299, 339, 441, 473, 566
FaqI	GGGAC	2 cut(s)	362, 386
FatI	CATG	3 cut(s)	160, 337, 471
FauI	CCCGC	1 cut(s)	317
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	3 cut(s)	257, 278, 398
HapII	CCGG	3 cut(s)	360, 405, 450
Hin1II	CATG	3 cut(s)	164, 341, 475
HinfI	GANTC	2 cut(s)	92, 278
HpaII	CCGG	3 cut(s)	360, 405, 450
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	115, 353, 571
Hpy188III	TCNNGA	2 cut(s)	257, 463
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	125, 627
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	4 cut(s)	4, 128, 160, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	2 cut(s)	215, 552
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	164, 341, 475
Kzo9I	GATC	3 cut(s)	169, 253, 504
LmnI	GCTCC	2 cut(s)	223, 619
LweI	GCATC	2 cut(s)	13, 360
MabI	ACCWGGT	1 cut(s)	426
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	399
MalI	GATC	3 cut(s)	171, 255, 506
MboI	GATC	3 cut(s)	169, 253, 504
MboII	GAAGA	5 cut(s)	179, 190, 260, 478, 568
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	2 cut(s)	131, 523
MlyI	GAGTC	2 cut(s)	86, 272
MmeI	TCCRAC	1 cut(s)	376
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	39, 119
MspI	CCGG	3 cut(s)	360, 405, 450
MspR9I	CCNGG	4 cut(s)	275, 405, 416, 428
MvaI	CCWGG	3 cut(s)	275, 416, 428
MwoI	GCNNNNNNNGC	1 cut(s)	620
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	169, 253, 504
NlaIII	CATG	3 cut(s)	164, 341, 475
NlaIV	GGNNCC	4 cut(s)	138, 420, 448, 615
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	164, 475
NspV	TTCGAA	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PflFI	GACNNNGTC	1 cut(s)	428
PfoI	TCCNGGA	2 cut(s)	273, 414
PleI	GAGTC	2 cut(s)	86, 272
PpsI	GAGTC	2 cut(s)	86, 272
PpuMI	RGGWCCY	2 cut(s)	418, 430
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	2 cut(s)	418, 430
Psp6I	CCWGG	3 cut(s)	273, 414, 426
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	3 cut(s)	273, 414, 426
PspN4I	GGNNCC	4 cut(s)	138, 420, 448, 615
PspPI	GGNCC	2 cut(s)	418, 430
PspPPI	RGGWCCY	2 cut(s)	418, 430
PspXI	VCTCGAGB	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	39, 119
Sau3AI	GATC	3 cut(s)	169, 253, 504
Sau96I	GGNCC	2 cut(s)	418, 430
SchI	GAGTC	2 cut(s)	86, 272
ScrFI	CCNGG	4 cut(s)	275, 405, 416, 428
SduI	GDGCHC	1 cut(s)	321
SexAI	ACCWGGT	1 cut(s)	426
SfaNI	GCATC	2 cut(s)	13, 360
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	2 cut(s)	418, 430
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	3 cut(s)	314, 477, 515
SmoI	CTYRAG	3 cut(s)	314, 477, 515
Sse9I	AATT	2 cut(s)	131, 523
SsiI	CCGC	5 cut(s)	295, 310, 330, 387, 499
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	4 cut(s)	273, 403, 414, 426
TaaI	ACNGT	2 cut(s)	125, 627
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	172, 315, 462, 528
TasI	AATT	2 cut(s)	131, 523
Tru1I	TTAA	2 cut(s)	39, 119
Tru9I	TTAA	2 cut(s)	39, 119
TscAI	CASTG	2 cut(s)	130, 243
TspDTI	ATGAA	2 cut(s)	448, 588
TspRI	CASTG	2 cut(s)	130, 243
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	418, 430
XceI	RCATGY	2 cut(s)	164, 475
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.