Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8126932.1

Orthogroup ID

OG0005827

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 626

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8126932.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 547 bp

tccttcaacacctcactcgctcacactcgctcgctcttccctcaccggcttccgagaaatctccaccgagcctaagcaaccccaaaccgacgctgtaaacctcacagaagcgccgcttcttaagaagcagaacgacgtcgtcccgcagaagaagaagcgagacgatgaagacgaagatggagatgaggcgatttcgaagattccggttcccaggcagaagtacatcccggtctccaaggccgagctgctagacggcgtcgtttcgaatctcttccgagaccagaacggcgatgatttggagcagtttcttcttctttcatcgtgcttggattcgattcttcatgccgagcacaaaaacattctggaggaaatgcgagccgattattcggaacccaactccatggagtacaagcaagcaattgaagagttagcaatggctaatgggcagggctcggattctgctgaaggaatcaatggagttgggagtgaagaaaatgaagctgaaattccgttcgattatgttgagggattgaggaaactcttgggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3754

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

4.49

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46915 AT2G46915
fragaria_vesca	FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970 FvH4_6g36970
malus_domestica	MD05G1207200.v1.1 MD17G1162400.v1.1
prunus_persica	Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1 Prupe.3G022900_v2.0.a1
pyrus_communis	pycom17g15550
rosa_chinensis	RchiOBHm_Chr2g0149491
rosa_laevigata	RLG00000020411
rosa_multiflora	Rmu_co8126932.1_g000001 Rmu_sc0006867.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098090
rosa_rugosa	Rorug02G0412000
rosa_samantha	Rh2AG471900 Rh2BG484100 Rh2CG457800 Rh2DG493300 Rh4DG241700 Rh7AG209900
rosa_wichuraiana	Rw2G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	139
AciI	CCGC	2 cut(s)	114, 144
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	484
AcyI	GRCGYC	2 cut(s)	136, 256
AfaI	GTAC	2 cut(s)	222, 408
AflII	CTTAAG	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	7, 423
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	245, 501
AluI	AGCT	2 cut(s)	245, 501
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	3 cut(s)	154, 236, 271
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	2 cut(s)	195, 264
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	2 cut(s)	269, 302
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	154, 236, 271
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	114, 246
BlsI	GCNGC	2 cut(s)	115, 247
Bme1390I	CCNGG	2 cut(s)	212, 228
BmiI	GGNNCC	2 cut(s)	208, 391
BmrFI	CCNGG	2 cut(s)	212, 228
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu14I	TTCGAA	2 cut(s)	195, 264
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	2 cut(s)	136, 256
BsaI	GGTCTC	2 cut(s)	236, 271
BsaJI	CCNNGG	3 cut(s)	210, 235, 400
BsaWI	WCCGGW	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	210, 235, 400
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	46, 204, 228
BslFI	GGGAC	1 cut(s)	126
BsmAI	GTCTC	3 cut(s)	154, 236, 271
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	2 cut(s)	236, 271
Bsp119I	TTCGAA	2 cut(s)	195, 264
Bsp1286I	GDGCHC	2 cut(s)	352, 453
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	114, 144
BspANI	GGCC	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	208, 391
BspQI	GCTCTTC	1 cut(s)	41
BspT104I	TTCGAA	2 cut(s)	195, 264
BspTI	CTTAAG	1 cut(s)	120
BspTNI	GGTCTC	2 cut(s)	236, 271
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	210, 235, 400
BssNI	GRCGYC	2 cut(s)	136, 256
BssT1I	CCWWGG	2 cut(s)	235, 400
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	3 cut(s)	41, 276, 418
BstACI	GRCGYC	2 cut(s)	136, 256
BstAFI	CTTAAG	1 cut(s)	120
BstBI	TTCGAA	2 cut(s)	195, 264
BstC8I	GCNNGC	3 cut(s)	32, 376, 415
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstMAI	GTCTC	3 cut(s)	154, 236, 271
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	210, 226
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	32, 376, 415
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	45
CseI	GACGC	2 cut(s)	99, 245
Csp6I	GTAC	2 cut(s)	221, 407
CviAII	CATG	2 cut(s)	342, 401
CviJI	RGCY	8 cut(s)	49, 71, 240, 245, 378, 438, 451, 501
CviKI_1	RGCY	8 cut(s)	49, 71, 240, 245, 378, 438, 451, 501
CviQI	GTAC	2 cut(s)	221, 407
DdeI	CTNAG	1 cut(s)	73
Eam1104I	CTCTTC	3 cut(s)	41, 276, 418
EarI	CTCTTC	3 cut(s)	41, 276, 418
Eco130I	CCWWGG	2 cut(s)	235, 400
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	2 cut(s)	236, 271
Eco57I	CTGAAG	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	235, 400
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	235, 400
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	345, 404
FaiI	YATR	3 cut(s)	343, 402, 520
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	2 cut(s)	341, 400
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	114, 246
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	114, 246
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	114, 246
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	3 cut(s)	46, 204, 228
HgaI	GACGC	2 cut(s)	99, 245
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	136, 256
Hin1II	CATG	2 cut(s)	345, 404
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	6 cut(s)	200, 266, 330, 335, 456, 469
HpaII	CCGG	3 cut(s)	46, 204, 228
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	4 cut(s)	54, 276, 389, 455
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	4 cut(s)	93, 138, 141, 261
HpyAV	CCTTC	2 cut(s)	13, 459
HpyCH4IV	ACGT	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	2 cut(s)	136, 256
Hsp92II	CATG	2 cut(s)	345, 404
HspAI	GCGC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	8 cut(s)	59, 197, 217, 224, 241, 294, 348, 432
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	352, 453
MluCI	AATT	2 cut(s)	418, 505
MnlI	CCTC	7 cut(s)	22, 51, 111, 179, 359, 518, 526
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	121
MspCI	CTTAAG	1 cut(s)	120
MspI	CCGG	3 cut(s)	46, 204, 228
MspR9I	CCNGG	2 cut(s)	212, 228
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	212
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	400
NlaIII	CATG	2 cut(s)	345, 404
NlaIV	GGNNCC	2 cut(s)	208, 391
NmeAIII	GCCGAG	2 cut(s)	266, 371
NspV	TTCGAA	2 cut(s)	195, 264
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	6 cut(s)	200, 266, 330, 335, 456, 469
PflFI	GACNNNGTC	2 cut(s)	138, 255
PkrI	GCNGC	2 cut(s)	115, 247
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	208, 391
PsyI	GACNNNGTC	2 cut(s)	138, 255
RsaI	GTAC	2 cut(s)	222, 408
RsaNI	GTAC	2 cut(s)	221, 407
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	121
SatI	GCNGC	2 cut(s)	114, 246
ScrFI	CCNGG	2 cut(s)	212, 228
SduI	GDGCHC	2 cut(s)	352, 453
SetI	ASST	5 cut(s)	14, 103, 139, 247, 503
SfuI	TTCGAA	2 cut(s)	195, 264
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	418, 505
SsiI	CCGC	2 cut(s)	114, 144
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	210, 226
StyI	CCWWGG	2 cut(s)	235, 400
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	4 cut(s)	195, 264, 333, 514
TasI	AATT	2 cut(s)	418, 505
TatI	WGTACW	2 cut(s)	220, 406
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	6 cut(s)	200, 266, 330, 335, 456, 469
Tru1I	TTAA	1 cut(s)	121
Tru9I	TTAA	1 cut(s)	121
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	4 cut(s)	181, 307, 330, 511
TspGWI	ACGGA	1 cut(s)	499
Tth111I	GACNNNGTC	2 cut(s)	138, 255
Vha464I	CTTAAG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.