Protein of unknown function (DUF3754)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 702 |
| AccB1I | GGYRCC | 1 cut(s) | 32 |
| AccBSI | CCGCTC | 1 cut(s) | 674 |
| AccII | CGCG | 3 cut(s) | 38, 82, 666 |
| AccIII | TCCGGA | 1 cut(s) | 1430 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AcoI | YGGCCR | 4 cut(s) | 91, 111, 171, 607 |
| AcsI | RAATTY | 2 cut(s) | 371, 455 |
| AcuI | CTGAAG | 2 cut(s) | 844, 1023 |
| AcvI | CACGTG | 1 cut(s) | 1211 |
| AcyI | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| AdeI | CACNNNGTG | 1 cut(s) | 84 |
| AfaI | GTAC | 3 cut(s) | 716, 754, 1119 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 96, 156, 824 |
| AflIII | ACRYGT | 1 cut(s) | 1208 |
| AgsI | TTSAA | 3 cut(s) | 335, 644, 1132 |
| AjnI | CCWGG | 2 cut(s) | 155, 493 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1124, 1156 |
| AleI | CACNNNNGTG | 1 cut(s) | 380 |
| Alw21I | GWGCWC | 7 cut(s) | 89, 787, 988, 1191, 1275, 1332, 1416 |
| Alw26I | GTCTC | 3 cut(s) | 157, 209, 822 |
| Alw44I | GTGCAC | 2 cut(s) | 783, 1271 |
| AlwI | GGATC | 1 cut(s) | 357 |
| Aor13HI | TCCGGA | 1 cut(s) | 1430 |
| AoxI | GGCC | 4 cut(s) | 91, 111, 171, 607 |
| ApaLI | GTGCAC | 2 cut(s) | 783, 1271 |
| ApeKI | GCWGC | 9 cut(s) | 325, 440, 538, 737, 767, 1226, 1229, 1442, 1454 |
| ApoI | RAATTY | 2 cut(s) | 371, 455 |
| AseI | ATTAAT | 2 cut(s) | 363, 552 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 584, 1029 |
| AspLEI | GCGC | 4 cut(s) | 35, 78, 666, 1397 |
| AspS9I | GGNCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| AsuC2I | CCSGG | 1 cut(s) | 924 |
| AsuHPI | GGTGA | 3 cut(s) | 55, 938, 1034 |
| AvaII | GGWCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| BaeGI | GKGCMC | 2 cut(s) | 787, 1275 |
| BalI | TGGCCA | 1 cut(s) | 609 |
| BanI | GGYRCC | 1 cut(s) | 32 |
| BanII | GRGCYC | 3 cut(s) | 988, 1191, 1219 |
| BauI | CACGAG | 1 cut(s) | 62 |
| BbrPI | CACGTG | 1 cut(s) | 1211 |
| BbsI | GAAGAC | 2 cut(s) | 803, 1301 |
| Bbv12I | GWGCWC | 7 cut(s) | 89, 787, 988, 1191, 1275, 1332, 1416 |
| BbvI | GCAGC | 9 cut(s) | 312, 452, 550, 749, 779, 1213, 1216, 1429, 1441 |
| BccI | CCATC | 7 cut(s) | 122, 397, 498, 1022, 1274, 1307, 1418 |
| BceAI | ACGGC | 1 cut(s) | 126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 716, 750 |
| BciT130I | CCWGG | 2 cut(s) | 157, 495 |
| BciVI | GTATCC | 1 cut(s) | 679 |
| BclI | TGATCA | 4 cut(s) | 21, 237, 892, 928 |
| BcnI | CCSGG | 1 cut(s) | 924 |
| BcoDI | GTCTC | 3 cut(s) | 157, 209, 822 |
| BfaI | CTAG | 1 cut(s) | 512 |
| BfmI | CTRYAG | 2 cut(s) | 414, 591 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BfuAI | ACCTGC | 1 cut(s) | 702 |
| BfuI | GTATCC | 1 cut(s) | 679 |
| Bme1390I | CCNGG | 3 cut(s) | 157, 495, 924 |
| Bme18I | GGWCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| BmiI | GGNNCC | 6 cut(s) | 34, 145, 146, 562, 563, 1429 |
| BmrFI | CCNGG | 3 cut(s) | 157, 495, 924 |
| BmrI | ACTGGG | 1 cut(s) | 765 |
| BmsI | GCATC | 3 cut(s) | 183, 1096, 1406 |
| BmuI | ACTGGG | 1 cut(s) | 765 |
| BpiI | GAAGAC | 2 cut(s) | 803, 1301 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1362, 1394 |
| BpmI | CTGGAG | 3 cut(s) | 149, 726, 846 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| BpuMI | CCSGG | 1 cut(s) | 924 |
| BsaAI | YACGTR | 2 cut(s) | 250, 1211 |
| BsaBI | GATNNNNATC | 1 cut(s) | 239 |
| BsaHI | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| BsaI | GGTCTC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 5 cut(s) | 36, 48, 213, 301, 1474 |
| BsaWI | WCCGGW | 1 cut(s) | 1430 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 819, 849, 960, 990, 1374, 1404 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 96, 156, 824 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse1I | ACTGG | 1 cut(s) | 760 |
| Bse3DI | GCAATG | 3 cut(s) | 150, 435, 1089 |
| Bse8I | GATNNNNATC | 1 cut(s) | 239 |
| BseAI | TCCGGA | 1 cut(s) | 1430 |
| BseBI | CCWGG | 2 cut(s) | 157, 495 |
| BseDI | CCNNGG | 5 cut(s) | 36, 48, 213, 301, 1474 |
| BseGI | GGATG | 4 cut(s) | 490, 1285, 1318, 1393 |
| BseJI | GATNNNNATC | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 96, 156, 824 |
| BseMI | GCAATG | 3 cut(s) | 150, 435, 1089 |
| BseMII | CTCAG | 1 cut(s) | 152 |
| BseNI | ACTGG | 1 cut(s) | 760 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseSI | GKGCMC | 2 cut(s) | 787, 1275 |
| BseXI | GCAGC | 9 cut(s) | 312, 452, 550, 749, 779, 1213, 1216, 1429, 1441 |
| BseYI | CCCAGC | 1 cut(s) | 1258 |
| BsgI | GTGCAG | 2 cut(s) | 557, 852 |
| Bsh1236I | CGCG | 3 cut(s) | 38, 82, 666 |
| Bsh1285I | CGRYCG | 1 cut(s) | 18 |
| BshFI | GGCC | 4 cut(s) | 93, 113, 173, 609 |
| BshNI | GGYRCC | 1 cut(s) | 32 |
| BsiEI | CGRYCG | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 7 cut(s) | 89, 787, 988, 1191, 1275, 1332, 1416 |
| BsiSI | CCGG | 4 cut(s) | 90, 201, 923, 1431 |
| BslFI | GGGAC | 5 cut(s) | 157, 424, 547, 772, 1136 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 96, 156, 824 |
| BsmAI | GTCTC | 3 cut(s) | 157, 209, 822 |
| BsmFI | GGGAC | 5 cut(s) | 157, 424, 547, 772, 1136 |
| BsnI | GGCC | 4 cut(s) | 93, 113, 173, 609 |
| Bso31I | GGTCTC | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 8 cut(s) | 89, 787, 988, 1191, 1219, 1275, 1332, 1416 |
| Bsp13I | TCCGGA | 1 cut(s) | 1430 |
| Bsp143I | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| BspANI | GGCC | 4 cut(s) | 93, 113, 173, 609 |
| BspCNI | CTCAG | 1 cut(s) | 153 |
| BspEI | TCCGGA | 1 cut(s) | 1430 |
| BspFNI | CGCG | 3 cut(s) | 38, 82, 666 |
| BspHI | TCATGA | 1 cut(s) | 1090 |
| BspLI | GGNNCC | 6 cut(s) | 34, 145, 146, 562, 563, 1429 |
| BspMI | ACCTGC | 1 cut(s) | 702 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BspT107I | GGYRCC | 1 cut(s) | 32 |
| BspTNI | GGTCTC | 1 cut(s) | 209 |
| BsrBI | CCGCTC | 1 cut(s) | 674 |
| BsrDI | GCAATG | 3 cut(s) | 150, 435, 1089 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BsrI | ACTGG | 1 cut(s) | 760 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 5 cut(s) | 36, 48, 213, 301, 1474 |
| BssMI | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| BssNI | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| BssSI | CACGAG | 1 cut(s) | 62 |
| BssT1I | CCWWGG | 1 cut(s) | 301 |
| Bst2BI | CACGAG | 1 cut(s) | 62 |
| Bst2UI | CCWGG | 2 cut(s) | 157, 495 |
| Bst4CI | ACNGT | 6 cut(s) | 49, 187, 604, 691, 1030, 1300 |
| Bst6I | CTCTTC | 2 cut(s) | 999, 1258 |
| BstACI | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 84 |
| BstBAI | YACGTR | 2 cut(s) | 250, 1211 |
| BstC8I | GCNNGC | 5 cut(s) | 80, 198, 227, 500, 1219 |
| BstDEI | CTNAG | 2 cut(s) | 161, 1367 |
| BstDSI | CCRYGG | 2 cut(s) | 36, 48 |
| BstEII | GGTNACC | 1 cut(s) | 43 |
| BstF5I | GGATG | 4 cut(s) | 490, 1285, 1318, 1393 |
| BstFNI | CGCG | 3 cut(s) | 38, 82, 666 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 4 cut(s) | 35, 78, 666, 1397 |
| BstKTI | GATC | 6 cut(s) | 24, 240, 352, 895, 931, 1108 |
| BstMAI | GTCTC | 3 cut(s) | 157, 209, 822 |
| BstMBI | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| BstMCI | CGRYCG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 84, 206, 661, 1007, 1223, 1451 |
| BstNI | CCWGG | 2 cut(s) | 157, 495 |
| BstPI | GGTNACC | 1 cut(s) | 43 |
| BstSCI | CCNGG | 3 cut(s) | 155, 493, 922 |
| BstSFI | CTRYAG | 2 cut(s) | 414, 591 |
| BstSLI | GKGCMC | 2 cut(s) | 787, 1275 |
| BstUI | CGCG | 3 cut(s) | 38, 82, 666 |
| BstV1I | GCAGC | 9 cut(s) | 312, 452, 550, 749, 779, 1213, 1216, 1429, 1441 |
| BstV2I | GAAGAC | 2 cut(s) | 803, 1301 |
| BsuI | GTATCC | 1 cut(s) | 679 |
| BsuRI | GGCC | 4 cut(s) | 93, 113, 173, 609 |
| BtgI | CCRYGG | 2 cut(s) | 36, 48 |
| BtsCI | GGATG | 4 cut(s) | 490, 1285, 1318, 1393 |
| BtsIMutI | CAGTG | 3 cut(s) | 906, 1305, 1335 |
| BveI | ACCTGC | 1 cut(s) | 702 |
| Cac8I | GCNNGC | 5 cut(s) | 80, 198, 227, 500, 1219 |
| CciI | TCATGA | 1 cut(s) | 1090 |
| CfoI | GCGC | 4 cut(s) | 35, 78, 666, 1397 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| Cfr42I | CCGCGG | 1 cut(s) | 39 |
| CseI | GACGC | 2 cut(s) | 185, 1075 |
| Csp6I | GTAC | 3 cut(s) | 715, 753, 1118 |
| CviAII | CATG | 6 cut(s) | 181, 806, 832, 844, 1091, 1354 |
| CviQI | GTAC | 3 cut(s) | 715, 753, 1118 |
| DdeI | CTNAG | 2 cut(s) | 161, 1367 |
| DinI | GGCGCC | 1 cut(s) | 34 |
| DpnI | GATC | 6 cut(s) | 23, 239, 351, 894, 930, 1107 |
| DpnII | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| DraI | TTTAAA | 1 cut(s) | 918 |
| DraIII | CACNNNGTG | 1 cut(s) | 84 |
| EaeI | YGGCCR | 4 cut(s) | 91, 111, 171, 607 |
| Eam1104I | CTCTTC | 2 cut(s) | 999, 1258 |
| EarI | CTCTTC | 2 cut(s) | 999, 1258 |
| EciI | GGCGGA | 1 cut(s) | 968 |
| Ecl136II | GAGCTC | 2 cut(s) | 986, 1189 |
| Eco130I | CCWWGG | 1 cut(s) | 301 |
| Eco24I | GRGCYC | 3 cut(s) | 988, 1191, 1219 |
| Eco31I | GGTCTC | 1 cut(s) | 209 |
| Eco32I | GATATC | 1 cut(s) | 1149 |
| Eco47I | GGWCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| Eco53kI | GAGCTC | 2 cut(s) | 986, 1189 |
| Eco57I | CTGAAG | 2 cut(s) | 844, 1023 |
| Eco72I | CACGTG | 1 cut(s) | 1211 |
| Eco91I | GGTNACC | 1 cut(s) | 43 |
| EcoICRI | GAGCTC | 2 cut(s) | 986, 1189 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 561 |
| EcoO65I | GGTNACC | 1 cut(s) | 43 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 2 cut(s) | 155, 493 |
| EcoRV | GATATC | 1 cut(s) | 1149 |
| EcoT14I | CCWWGG | 1 cut(s) | 301 |
| EcoT22I | ATGCAT | 1 cut(s) | 1089 |
| EcoT38I | GRGCYC | 3 cut(s) | 988, 1191, 1219 |
| EgeI | GGCGCC | 1 cut(s) | 34 |
| EheI | GGCGCC | 1 cut(s) | 34 |
| ErhI | CCWWGG | 1 cut(s) | 301 |
| FaeI | CATG | 6 cut(s) | 184, 809, 835, 847, 1094, 1357 |
| FaqI | GGGAC | 5 cut(s) | 157, 424, 547, 772, 1136 |
| FatI | CATG | 6 cut(s) | 180, 805, 831, 843, 1090, 1353 |
| FauI | CCCGC | 1 cut(s) | 321 |
| FauNDI | CATATG | 1 cut(s) | 772 |
| FbaI | TGATCA | 4 cut(s) | 21, 237, 892, 928 |
| FokI | GGATG | 4 cut(s) | 477, 1292, 1325, 1400 |
| FriOI | GRGCYC | 3 cut(s) | 988, 1191, 1219 |
| FspBI | CTAG | 1 cut(s) | 512 |
| GlaI | GCGC | 4 cut(s) | 34, 77, 665, 1396 |
| GsaI | CCCAGC | 1 cut(s) | 1262 |
| GsuI | CTGGAG | 3 cut(s) | 149, 726, 846 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 4 cut(s) | 93, 113, 173, 609 |
| HapII | CCGG | 4 cut(s) | 90, 201, 923, 1431 |
| HgaI | GACGC | 2 cut(s) | 185, 1075 |
| HhaI | GCGC | 4 cut(s) | 35, 78, 666, 1397 |
| Hin1I | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| Hin1II | CATG | 6 cut(s) | 184, 809, 835, 847, 1094, 1357 |
| Hin6I | GCGC | 4 cut(s) | 33, 76, 664, 1395 |
| HinP1I | GCGC | 4 cut(s) | 33, 76, 664, 1395 |
| HinfI | GANTC | 2 cut(s) | 1236, 1487 |
| HpaII | CCGG | 4 cut(s) | 90, 201, 923, 1431 |
| HphI | GGTGA | 3 cut(s) | 55, 938, 1034 |
| Hpy166II | GTNNAC | 4 cut(s) | 356, 576, 785, 1273 |
| Hpy188I | TCNGA | 6 cut(s) | 214, 402, 933, 1251, 1382, 1478 |
| Hpy8I | GTNNAC | 4 cut(s) | 356, 576, 785, 1273 |
| Hpy99I | CGWCG | 1 cut(s) | 179 |
| HpyAV | CCTTC | 5 cut(s) | 4, 340, 413, 464, 532 |
| HpyCH4III | ACNGT | 6 cut(s) | 49, 187, 604, 691, 1030, 1300 |
| HpyCH4IV | ACGT | 3 cut(s) | 249, 781, 1210 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 84, 206, 661, 1007, 1223, 1451 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 1367 |
| HpySE526I | ACGT | 3 cut(s) | 249, 781, 1210 |
| Hsp92I | GRCGYC | 3 cut(s) | 33, 177, 1067 |
| Hsp92II | CATG | 6 cut(s) | 184, 809, 835, 847, 1094, 1357 |
| HspAI | GCGC | 4 cut(s) | 33, 76, 664, 1395 |
| KasI | GGCGCC | 1 cut(s) | 32 |
| KflI | GGGWCCC | 2 cut(s) | 144, 561 |
| Kpn2I | TCCGGA | 1 cut(s) | 1430 |
| Ksp22I | TGATCA | 4 cut(s) | 21, 237, 892, 928 |
| KspI | CCGCGG | 1 cut(s) | 39 |
| Kzo9I | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| LmnI | GCTCC | 3 cut(s) | 92, 124, 1439 |
| Lsp1109I | GCAGC | 9 cut(s) | 312, 452, 550, 749, 779, 1213, 1216, 1429, 1441 |
| LweI | GCATC | 3 cut(s) | 183, 1096, 1406 |
| MaeI | CTAG | 1 cut(s) | 512 |
| MaeII | ACGT | 3 cut(s) | 249, 781, 1210 |
| MaeIII | GTNAC | 1 cut(s) | 43 |
| MalI | GATC | 6 cut(s) | 23, 239, 351, 894, 930, 1107 |
| MbiI | CCGCTC | 1 cut(s) | 674 |
| MboI | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| MboII | GAAGA | 8 cut(s) | 19, 803, 866, 955, 1016, 1144, 1275, 1306 |
| MfeI | CAATTG | 1 cut(s) | 335 |
| MhlI | GDGCHC | 8 cut(s) | 89, 787, 988, 1191, 1219, 1275, 1332, 1416 |
| MlsI | TGGCCA | 1 cut(s) | 609 |
| MluNI | TGGCCA | 1 cut(s) | 609 |
| Mly113I | GGCGCC | 1 cut(s) | 33 |
| MmeI | TCCRAC | 2 cut(s) | 276, 673 |
| Mox20I | TGGCCA | 1 cut(s) | 609 |
| Mph1103I | ATGCAT | 1 cut(s) | 1089 |
| MroI | TCCGGA | 1 cut(s) | 1430 |
| MroXI | GAANNNNTTC | 2 cut(s) | 584, 1029 |
| MscI | TGGCCA | 1 cut(s) | 609 |
| MseI | TTAA | 9 cut(s) | 363, 552, 570, 681, 881, 917, 1043, 1110, 1164 |
| MslI | CAYNNNNRTG | 3 cut(s) | 380, 1278, 1419 |
| Msp20I | TGGCCA | 1 cut(s) | 609 |
| MspA1I | CMGCKG | 2 cut(s) | 38, 740 |
| MspI | CCGG | 4 cut(s) | 90, 201, 923, 1431 |
| MspR9I | CCNGG | 3 cut(s) | 157, 495, 924 |
| MunI | CAATTG | 1 cut(s) | 335 |
| MvaI | CCWGG | 2 cut(s) | 157, 495 |
| MvnI | CGCG | 3 cut(s) | 38, 82, 666 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 84, 206, 661, 1007, 1223, 1451 |
| NarI | GGCGCC | 1 cut(s) | 33 |
| NciI | CCSGG | 1 cut(s) | 924 |
| NdeI | CATATG | 1 cut(s) | 772 |
| NdeII | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| NlaIII | CATG | 6 cut(s) | 184, 809, 835, 847, 1094, 1357 |
| NlaIV | GGNNCC | 6 cut(s) | 34, 145, 146, 562, 563, 1429 |
| NmeAIII | GCCGAG | 1 cut(s) | 1007 |
| NmuCI | GTSAC | 1 cut(s) | 43 |
| NsiI | ATGCAT | 1 cut(s) | 1089 |
| OliI | CACNNNNGTG | 1 cut(s) | 380 |
| PagI | TCATGA | 1 cut(s) | 1090 |
| PdmI | GAANNNNTTC | 2 cut(s) | 584, 1029 |
| PfeI | GAWTC | 1 cut(s) | 1236 |
| PluTI | GGCGCC | 1 cut(s) | 36 |
| PmaCI | CACGTG | 1 cut(s) | 1211 |
| PmlI | CACGTG | 1 cut(s) | 1211 |
| Ppu21I | YACGTR | 2 cut(s) | 250, 1211 |
| PpuMI | RGGWCCY | 2 cut(s) | 144, 561 |
| PshBI | ATTAAT | 2 cut(s) | 363, 552 |
| Psp124BI | GAGCTC | 2 cut(s) | 988, 1191 |
| Psp5II | RGGWCCY | 2 cut(s) | 144, 561 |
| Psp6I | CCWGG | 2 cut(s) | 155, 493 |
| PspCI | CACGTG | 1 cut(s) | 1211 |
| PspEI | GGTNACC | 1 cut(s) | 43 |
| PspFI | CCCAGC | 1 cut(s) | 1258 |
| PspGI | CCWGG | 2 cut(s) | 155, 493 |
| PspN4I | GGNNCC | 6 cut(s) | 34, 145, 146, 562, 563, 1429 |
| PspPI | GGNCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| PspPPI | RGGWCCY | 2 cut(s) | 144, 561 |
| PvuII | CAGCTG | 1 cut(s) | 740 |
| RsaI | GTAC | 3 cut(s) | 716, 754, 1119 |
| RsaNI | GTAC | 3 cut(s) | 715, 753, 1118 |
| RseI | CAYNNNNRTG | 3 cut(s) | 380, 1278, 1419 |
| SacI | GAGCTC | 2 cut(s) | 988, 1191 |
| SacII | CCGCGG | 1 cut(s) | 39 |
| SaqAI | TTAA | 9 cut(s) | 363, 552, 570, 681, 881, 917, 1043, 1110, 1164 |
| Sau3AI | GATC | 6 cut(s) | 21, 237, 349, 892, 928, 1105 |
| Sau96I | GGNCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| ScrFI | CCNGG | 3 cut(s) | 157, 495, 924 |
| SduI | GDGCHC | 8 cut(s) | 89, 787, 988, 1191, 1219, 1275, 1332, 1416 |
| SfaNI | GCATC | 3 cut(s) | 183, 1096, 1406 |
| SfcI | CTRYAG | 2 cut(s) | 414, 591 |
| SfoI | GGCGCC | 1 cut(s) | 34 |
| Sfr303I | CCGCGG | 1 cut(s) | 39 |
| SgrBI | CCGCGG | 1 cut(s) | 39 |
| SinI | GGWCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 380, 1278, 1419 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| SspDI | GGCGCC | 1 cut(s) | 32 |
| SspI | AATATT | 1 cut(s) | 1198 |
| SspMI | CTAG | 1 cut(s) | 512 |
| SstI | GAGCTC | 2 cut(s) | 988, 1191 |
| StyD4I | CCNGG | 3 cut(s) | 155, 493, 922 |
| StyI | CCWWGG | 1 cut(s) | 301 |
| TaaI | ACNGT | 6 cut(s) | 49, 187, 604, 691, 1030, 1300 |
| TaiI | ACGT | 3 cut(s) | 252, 784, 1213 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TauI | GCSGC | 4 cut(s) | 33, 38, 56, 59 |
| TfiI | GAWTC | 1 cut(s) | 1236 |
| Tru1I | TTAA | 9 cut(s) | 363, 552, 570, 681, 881, 917, 1043, 1110, 1164 |
| Tru9I | TTAA | 9 cut(s) | 363, 552, 570, 681, 881, 917, 1043, 1110, 1164 |
| TscAI | CASTG | 3 cut(s) | 913, 1305, 1342 |
| TseFI | GTSAC | 1 cut(s) | 43 |
| TseI | GCWGC | 9 cut(s) | 325, 440, 538, 737, 767, 1226, 1229, 1442, 1454 |
| Tsp45I | GTSAC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 3 cut(s) | 424, 888, 1045 |
| TspGWI | ACGGA | 3 cut(s) | 59, 308, 392 |
| TspRI | CASTG | 3 cut(s) | 913, 1305, 1342 |
| VneI | GTGCAC | 2 cut(s) | 783, 1271 |
| VpaK11BI | GGWCC | 6 cut(s) | 67, 99, 144, 298, 473, 561 |
| VspI | ATTAAT | 2 cut(s) | 363, 552 |
| XapI | RAATTY | 2 cut(s) | 371, 455 |
| XmnI | GAANNNNTTC | 2 cut(s) | 584, 1029 |
| XspI | CTAG | 1 cut(s) | 512 |
| Zsp2I | ATGCAT | 1 cut(s) | 1089 |