transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 144 - 218 | 3.5e-13 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 242 |
| AcsI | RAATTY | 2 cut(s) | 61, 680 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 386 |
| AgsI | TTSAA | 1 cut(s) | 67 |
| AjnI | CCWGG | 3 cut(s) | 40, 175, 349 |
| AluBI | AGCT | 5 cut(s) | 134, 182, 320, 613, 769 |
| AluI | AGCT | 5 cut(s) | 134, 182, 320, 613, 769 |
| Alw21I | GWGCWC | 1 cut(s) | 136 |
| Alw26I | GTCTC | 3 cut(s) | 14, 298, 499 |
| AoxI | GGCC | 3 cut(s) | 310, 447, 745 |
| ApeKI | GCWGC | 3 cut(s) | 361, 404, 617 |
| ApoI | RAATTY | 2 cut(s) | 61, 680 |
| AspS9I | GGNCC | 4 cut(s) | 185, 447, 575, 786 |
| AsuHPI | GGTGA | 2 cut(s) | 84, 530 |
| AvaII | GGWCC | 3 cut(s) | 185, 575, 786 |
| BanII | GRGCYC | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 1 cut(s) | 136 |
| BbvI | GCAGC | 3 cut(s) | 373, 416, 629 |
| BciT130I | CCWGG | 3 cut(s) | 42, 177, 351 |
| BcoDI | GTCTC | 3 cut(s) | 14, 298, 499 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BfmI | CTRYAG | 1 cut(s) | 235 |
| BfuAI | ACCTGC | 1 cut(s) | 242 |
| BisI | GCNGC | 3 cut(s) | 362, 405, 618 |
| BlsI | GCNGC | 3 cut(s) | 363, 406, 619 |
| Bme1390I | CCNGG | 3 cut(s) | 42, 177, 351 |
| Bme18I | GGWCC | 3 cut(s) | 185, 575, 786 |
| BmgT120I | GGNCC | 4 cut(s) | 185, 447, 575, 786 |
| BmiI | GGNNCC | 4 cut(s) | 187, 448, 576, 577 |
| BmrFI | CCNGG | 3 cut(s) | 42, 177, 351 |
| BmsI | GCATC | 3 cut(s) | 98, 317, 416 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| Bpu10I | CCTNAGC | 1 cut(s) | 609 |
| BsaI | GGTCTC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 1 cut(s) | 349 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 386 |
| Bse1I | ACTGG | 2 cut(s) | 154, 289 |
| Bse3DI | GCAATG | 3 cut(s) | 84, 165, 475 |
| BseBI | CCWGG | 3 cut(s) | 42, 177, 351 |
| BseDI | CCNNGG | 1 cut(s) | 349 |
| BseGI | GGATG | 1 cut(s) | 293 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 386 |
| BseMI | GCAATG | 3 cut(s) | 84, 165, 475 |
| BseMII | CTCAG | 2 cut(s) | 149, 600 |
| BseNI | ACTGG | 2 cut(s) | 154, 289 |
| BseXI | GCAGC | 3 cut(s) | 373, 416, 629 |
| BsgI | GTGCAG | 1 cut(s) | 728 |
| BshFI | GGCC | 3 cut(s) | 312, 449, 747 |
| BsiHKAI | GWGCWC | 1 cut(s) | 136 |
| BslFI | GGGAC | 3 cut(s) | 171, 403, 588 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 386 |
| BsmAI | GTCTC | 3 cut(s) | 14, 298, 499 |
| BsmFI | GGGAC | 3 cut(s) | 171, 403, 588 |
| BsnI | GGCC | 3 cut(s) | 312, 449, 747 |
| Bso31I | GGTCTC | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 1 cut(s) | 136 |
| BspANI | GGCC | 3 cut(s) | 312, 449, 747 |
| BspCNI | CTCAG | 2 cut(s) | 148, 601 |
| BspLI | GGNNCC | 4 cut(s) | 187, 448, 576, 577 |
| BspMAI | CTGCAG | 1 cut(s) | 239 |
| BspMI | ACCTGC | 1 cut(s) | 242 |
| BspTNI | GGTCTC | 1 cut(s) | 14 |
| BsrDI | GCAATG | 3 cut(s) | 84, 165, 475 |
| BsrI | ACTGG | 2 cut(s) | 154, 289 |
| BssECI | CCNNGG | 1 cut(s) | 349 |
| Bst2UI | CCWGG | 3 cut(s) | 42, 177, 351 |
| Bst4CI | ACNGT | 1 cut(s) | 517 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstC8I | GCNNGC | 2 cut(s) | 402, 615 |
| BstDEI | CTNAG | 3 cut(s) | 135, 228, 609 |
| BstF5I | GGATG | 1 cut(s) | 293 |
| BstMAI | GTCTC | 3 cut(s) | 14, 298, 499 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 51, 131, 401 |
| BstNI | CCWGG | 3 cut(s) | 42, 177, 351 |
| BstSCI | CCNGG | 3 cut(s) | 40, 175, 349 |
| BstSFI | CTRYAG | 1 cut(s) | 235 |
| BstV1I | GCAGC | 3 cut(s) | 373, 416, 629 |
| BsuRI | GGCC | 3 cut(s) | 312, 449, 747 |
| BtsCI | GGATG | 1 cut(s) | 293 |
| BveI | ACCTGC | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 2 cut(s) | 402, 615 |
| Cfr13I | GGNCC | 4 cut(s) | 185, 447, 575, 786 |
| CviAII | CATG | 2 cut(s) | 221, 460 |
| DdeI | CTNAG | 3 cut(s) | 135, 228, 609 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| Ecl136II | GAGCTC | 1 cut(s) | 134 |
| Eco147I | AGGCCT | 1 cut(s) | 747 |
| Eco24I | GRGCYC | 1 cut(s) | 136 |
| Eco31I | GGTCTC | 1 cut(s) | 14 |
| Eco47I | GGWCC | 3 cut(s) | 185, 575, 786 |
| Eco53kI | GAGCTC | 1 cut(s) | 134 |
| EcoICRI | GAGCTC | 1 cut(s) | 134 |
| EcoO109I | RGGNCCY | 1 cut(s) | 575 |
| EcoRII | CCWGG | 3 cut(s) | 40, 175, 349 |
| EcoT38I | GRGCYC | 1 cut(s) | 136 |
| FaeI | CATG | 2 cut(s) | 224, 463 |
| FaiI | YATR | 6 cut(s) | 72, 222, 398, 461, 686, 779 |
| FaqI | GGGAC | 3 cut(s) | 171, 403, 588 |
| FatI | CATG | 2 cut(s) | 220, 459 |
| Fnu4HI | GCNGC | 3 cut(s) | 362, 405, 618 |
| FokI | GGATG | 1 cut(s) | 300 |
| FriOI | GRGCYC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 3 cut(s) | 362, 405, 618 |
| FspBI | CTAG | 1 cut(s) | 33 |
| GluI | GCNGC | 3 cut(s) | 362, 405, 618 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| HaeIII | GGCC | 3 cut(s) | 312, 449, 747 |
| Hin1II | CATG | 2 cut(s) | 224, 463 |
| HincII | GTYRAC | 2 cut(s) | 200, 356 |
| HindII | GTYRAC | 2 cut(s) | 200, 356 |
| HinfI | GANTC | 1 cut(s) | 781 |
| HphI | GGTGA | 2 cut(s) | 84, 530 |
| Hpy166II | GTNNAC | 4 cut(s) | 200, 356, 650, 740 |
| Hpy188I | TCNGA | 4 cut(s) | 138, 158, 376, 786 |
| Hpy188III | TCNNGA | 3 cut(s) | 33, 608, 698 |
| Hpy8I | GTNNAC | 4 cut(s) | 200, 356, 650, 740 |
| HpyCH4III | ACNGT | 1 cut(s) | 517 |
| HpyCH4V | TGCA | 8 cut(s) | 89, 125, 237, 404, 506, 520, 617, 709 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 51, 131, 401 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 228, 609 |
| Hsp92II | CATG | 2 cut(s) | 224, 463 |
| KflI | GGGWCCC | 1 cut(s) | 575 |
| LmnI | GCTCC | 2 cut(s) | 131, 179 |
| Lsp1109I | GCAGC | 3 cut(s) | 373, 416, 629 |
| LweI | GCATC | 3 cut(s) | 98, 317, 416 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MboII | GAAGA | 2 cut(s) | 90, 363 |
| MfeI | CAATTG | 3 cut(s) | 126, 641, 658 |
| MhlI | GDGCHC | 1 cut(s) | 136 |
| MlyI | GAGTC | 1 cut(s) | 775 |
| MmeI | TCCRAC | 1 cut(s) | 273 |
| MnlI | CCTC | 6 cut(s) | 17, 74, 432, 758, 783, 803 |
| MseI | TTAA | 2 cut(s) | 111, 543 |
| MspA1I | CMGCKG | 1 cut(s) | 320 |
| MspR9I | CCNGG | 3 cut(s) | 42, 177, 351 |
| MunI | CAATTG | 3 cut(s) | 126, 641, 658 |
| MvaI | CCWGG | 3 cut(s) | 42, 177, 351 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 51, 131, 401 |
| NlaIII | CATG | 2 cut(s) | 224, 463 |
| NlaIV | GGNNCC | 4 cut(s) | 187, 448, 576, 577 |
| PceI | AGGCCT | 1 cut(s) | 747 |
| PfoI | TCCNGGA | 1 cut(s) | 175 |
| PkrI | GCNGC | 3 cut(s) | 363, 406, 619 |
| PleI | GAGTC | 1 cut(s) | 775 |
| PpsI | GAGTC | 1 cut(s) | 775 |
| PpuMI | RGGWCCY | 1 cut(s) | 575 |
| Psp124BI | GAGCTC | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 575 |
| Psp6I | CCWGG | 3 cut(s) | 40, 175, 349 |
| PspGI | CCWGG | 3 cut(s) | 40, 175, 349 |
| PspN4I | GGNNCC | 4 cut(s) | 187, 448, 576, 577 |
| PspPI | GGNCC | 4 cut(s) | 185, 447, 575, 786 |
| PspPPI | RGGWCCY | 1 cut(s) | 575 |
| PstI | CTGCAG | 1 cut(s) | 239 |
| PvuII | CAGCTG | 1 cut(s) | 320 |
| SacI | GAGCTC | 1 cut(s) | 136 |
| SaqAI | TTAA | 2 cut(s) | 111, 543 |
| SatI | GCNGC | 3 cut(s) | 362, 405, 618 |
| Sau96I | GGNCC | 4 cut(s) | 185, 447, 575, 786 |
| SchI | GAGTC | 1 cut(s) | 775 |
| ScrFI | CCNGG | 3 cut(s) | 42, 177, 351 |
| SduI | GDGCHC | 1 cut(s) | 136 |
| SfaNI | GCATC | 3 cut(s) | 98, 317, 416 |
| SfcI | CTRYAG | 1 cut(s) | 235 |
| SinI | GGWCC | 3 cut(s) | 185, 575, 786 |
| SseBI | AGGCCT | 1 cut(s) | 747 |
| SspMI | CTAG | 1 cut(s) | 33 |
| SstI | GAGCTC | 1 cut(s) | 136 |
| StuI | AGGCCT | 1 cut(s) | 747 |
| StyD4I | CCNGG | 3 cut(s) | 40, 175, 349 |
| TaaI | ACNGT | 1 cut(s) | 517 |
| TaqII | GACCGA | 1 cut(s) | 206 |
| Tru1I | TTAA | 2 cut(s) | 111, 543 |
| Tru9I | TTAA | 2 cut(s) | 111, 543 |
| TseI | GCWGC | 3 cut(s) | 361, 404, 617 |
| TspDTI | ATGAA | 2 cut(s) | 325, 693 |
| VpaK11BI | GGWCC | 3 cut(s) | 185, 575, 786 |
| XapI | RAATTY | 2 cut(s) | 61, 680 |
| XbaI | TCTAGA | 1 cut(s) | 32 |
| XspI | CTAG | 1 cut(s) | 33 |