GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 59 - 235 | 7e-21 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 491 - 568 | 1.6e-13 | Pol polyprotein, beta-barrel domain |
| rve | PF00665 | 656 - 759 | 3.9e-08 | Integrase core domain |
| SH3_retrovirus | PF25597 | 833 - 892 | 1.9e-20 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 638, 942 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| Acc65I | GGTACC | 2 cut(s) | 2370, 2861 |
| AccB1I | GGYRCC | 4 cut(s) | 791, 1261, 2370, 2861 |
| AccI | GTMKAC | 2 cut(s) | 1436, 2078 |
| AccII | CGCG | 1 cut(s) | 1432 |
| AciI | CCGC | 3 cut(s) | 795, 1432, 2810 |
| AclWI | GGATC | 5 cut(s) | 210, 223, 546, 787, 2904 |
| AcsI | RAATTY | 7 cut(s) | 160, 195, 989, 1194, 1916, 2152, 2224 |
| AcuI | CTGAAG | 3 cut(s) | 714, 1358, 1812 |
| AdeI | CACNNNGTG | 1 cut(s) | 2843 |
| AfaI | GTAC | 5 cut(s) | 1659, 2071, 2372, 2733, 2863 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 20, 110 |
| AflII | CTTAAG | 1 cut(s) | 2231 |
| AflIII | ACRYGT | 2 cut(s) | 1654, 2901 |
| AjnI | CCWGG | 3 cut(s) | 155, 2792, 2878 |
| Alw21I | GWGCWC | 3 cut(s) | 1168, 1400, 3097 |
| Alw26I | GTCTC | 8 cut(s) | 1089, 1629, 1880, 2315, 2442, 2638, 2967, 3105 |
| AlwI | GGATC | 5 cut(s) | 210, 223, 546, 787, 2904 |
| AoxI | GGCC | 1 cut(s) | 1488 |
| ApoI | RAATTY | 7 cut(s) | 160, 195, 989, 1194, 1916, 2152, 2224 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1174, 1206, 1495, 1527 |
| AseI | ATTAAT | 2 cut(s) | 2214, 2403 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 962, 1974 |
| Asp718I | GGTACC | 2 cut(s) | 2370, 2861 |
| AspLEI | GCGC | 2 cut(s) | 678, 3122 |
| AspS9I | GGNCC | 3 cut(s) | 1488, 1994, 2924 |
| AsuHPI | GGTGA | 4 cut(s) | 75, 1992, 2457, 2722 |
| AvaII | GGWCC | 2 cut(s) | 1994, 2924 |
| BamHI | GGATCC | 1 cut(s) | 215 |
| BanI | GGYRCC | 4 cut(s) | 791, 1261, 2370, 2861 |
| BanII | GRGCYC | 4 cut(s) | 1073, 1400, 2292, 3097 |
| BbsI | GAAGAC | 5 cut(s) | 596, 1038, 1728, 2345, 2810 |
| Bbv12I | GWGCWC | 3 cut(s) | 1168, 1400, 3097 |
| BccI | CCATC | 3 cut(s) | 206, 1252, 2183 |
| BciT130I | CCWGG | 3 cut(s) | 157, 2794, 2880 |
| BcoDI | GTCTC | 8 cut(s) | 1089, 1629, 1880, 2315, 2442, 2638, 2967, 3105 |
| BfaI | CTAG | 5 cut(s) | 105, 441, 2004, 2474, 2685 |
| BfmI | CTRYAG | 3 cut(s) | 515, 532, 1956 |
| BfoI | RGCGCY | 1 cut(s) | 3123 |
| BfrI | CTTAAG | 1 cut(s) | 2231 |
| BglII | AGATCT | 1 cut(s) | 2528 |
| Bme1390I | CCNGG | 3 cut(s) | 157, 2794, 2880 |
| Bme18I | GGWCC | 2 cut(s) | 1994, 2924 |
| BmgT120I | GGNCC | 3 cut(s) | 1488, 1994, 2924 |
| BmrFI | CCNGG | 3 cut(s) | 157, 2794, 2880 |
| BmrI | ACTGGG | 2 cut(s) | 848, 1264 |
| BmsI | GCATC | 5 cut(s) | 760, 815, 1699, 2260, 2774 |
| BmuI | ACTGGG | 2 cut(s) | 848, 1264 |
| BpiI | GAAGAC | 5 cut(s) | 596, 1038, 1728, 2345, 2810 |
| BpmI | CTGGAG | 1 cut(s) | 2776 |
| BpuEI | CTTGAG | 1 cut(s) | 2949 |
| BsaBI | GATNNNNATC | 3 cut(s) | 237, 510, 2955 |
| BsaJI | CCNNGG | 4 cut(s) | 2706, 2793, 2879, 2892 |
| BsaWI | WCCGGW | 1 cut(s) | 1414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1429, 1459 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 20, 110 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 8 cut(s) | 447, 854, 1027, 1270, 1567, 2424, 2553, 2907 |
| Bse3DI | GCAATG | 2 cut(s) | 1395, 1801 |
| Bse8I | GATNNNNATC | 3 cut(s) | 237, 510, 2955 |
| BseBI | CCWGG | 3 cut(s) | 157, 2794, 2880 |
| BseDI | CCNNGG | 4 cut(s) | 2706, 2793, 2879, 2892 |
| BseGI | GGATG | 9 cut(s) | 142, 217, 1366, 1381, 1544, 1816, 2752, 2944, 3010 |
| BseJI | GATNNNNATC | 3 cut(s) | 237, 510, 2955 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 20, 110 |
| BseMI | GCAATG | 2 cut(s) | 1395, 1801 |
| BseNI | ACTGG | 8 cut(s) | 447, 854, 1027, 1270, 1567, 2424, 2553, 2907 |
| BseRI | GAGGAG | 4 cut(s) | 1086, 2265, 2349, 3049 |
| BseYI | CCCAGC | 1 cut(s) | 773 |
| BsgI | GTGCAG | 3 cut(s) | 1323, 1437, 2931 |
| Bsh1236I | CGCG | 1 cut(s) | 1432 |
| BshFI | GGCC | 1 cut(s) | 1490 |
| BshNI | GGYRCC | 4 cut(s) | 791, 1261, 2370, 2861 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1168, 1400, 3097 |
| BsiSI | CCGG | 2 cut(s) | 14, 1415 |
| BslFI | GGGAC | 3 cut(s) | 186, 949, 2910 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 20, 110 |
| BsmAI | GTCTC | 8 cut(s) | 1089, 1629, 1880, 2315, 2442, 2638, 2967, 3105 |
| BsmFI | GGGAC | 3 cut(s) | 186, 949, 2910 |
| BsmI | GAATGC | 4 cut(s) | 1603, 2415, 2564, 3131 |
| BsnI | GGCC | 1 cut(s) | 1490 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1073, 1168, 1400, 2292, 3097 |
| Bsp1407I | TGTACA | 1 cut(s) | 2069 |
| Bsp143I | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| Bsp19I | CCATGG | 1 cut(s) | 2892 |
| BspACI | CCGC | 3 cut(s) | 795, 1432, 2810 |
| BspANI | GGCC | 1 cut(s) | 1490 |
| BspFNI | CGCG | 1 cut(s) | 1432 |
| BspHI | TCATGA | 4 cut(s) | 241, 316, 330, 2097 |
| BspMAI | CTGCAG | 1 cut(s) | 519 |
| BspPI | GGATC | 5 cut(s) | 210, 223, 546, 787, 2904 |
| BspQI | GCTCTTC | 2 cut(s) | 1078, 1173 |
| BspT107I | GGYRCC | 4 cut(s) | 791, 1261, 2370, 2861 |
| BspTI | CTTAAG | 1 cut(s) | 2231 |
| BsrDI | GCAATG | 2 cut(s) | 1395, 1801 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrGI | TGTACA | 1 cut(s) | 2069 |
| BsrI | ACTGG | 8 cut(s) | 447, 854, 1027, 1270, 1567, 2424, 2553, 2907 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 4 cut(s) | 2706, 2793, 2879, 2892 |
| BssMI | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| BssNAI | GTATAC | 1 cut(s) | 2079 |
| BssT1I | CCWWGG | 2 cut(s) | 2706, 2892 |
| Bst1107I | GTATAC | 1 cut(s) | 2079 |
| Bst2UI | CCWGG | 3 cut(s) | 157, 2794, 2880 |
| Bst6I | CTCTTC | 7 cut(s) | 690, 850, 1078, 1173, 1377, 1617, 2340 |
| BstAFI | CTTAAG | 1 cut(s) | 2231 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 803 |
| BstAUI | TGTACA | 1 cut(s) | 2069 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 2541 |
| BstDSI | CCRYGG | 1 cut(s) | 2892 |
| BstF5I | GGATG | 9 cut(s) | 142, 217, 1366, 1381, 1544, 1816, 2752, 2944, 3010 |
| BstFNI | CGCG | 1 cut(s) | 1432 |
| BstH2I | RGCGCY | 1 cut(s) | 3123 |
| BstHHI | GCGC | 2 cut(s) | 678, 3122 |
| BstKTI | GATC | 8 cut(s) | 218, 541, 782, 843, 1237, 2479, 2531, 2899 |
| BstMAI | GTCTC | 8 cut(s) | 1089, 1629, 1880, 2315, 2442, 2638, 2967, 3105 |
| BstMBI | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 68, 698, 749, 803, 1108, 3126 |
| BstNI | CCWGG | 3 cut(s) | 157, 2794, 2880 |
| BstNSI | RCATGY | 4 cut(s) | 1328, 1658, 2645, 2905 |
| BstSCI | CCNGG | 3 cut(s) | 155, 2792, 2878 |
| BstSFI | CTRYAG | 3 cut(s) | 515, 532, 1956 |
| BstUI | CGCG | 1 cut(s) | 1432 |
| BstV2I | GAAGAC | 5 cut(s) | 596, 1038, 1728, 2345, 2810 |
| BstX2I | RGATCY | 2 cut(s) | 215, 2528 |
| BstYI | RGATCY | 2 cut(s) | 215, 2528 |
| BstZ17I | GTATAC | 1 cut(s) | 2079 |
| BsuRI | GGCC | 1 cut(s) | 1490 |
| BtgI | CCRYGG | 1 cut(s) | 2892 |
| BtsCI | GGATG | 9 cut(s) | 142, 217, 1366, 1381, 1544, 1816, 2752, 2944, 3010 |
| BtsI | GCAGTG | 2 cut(s) | 342, 357 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 2541 |
| CciI | TCATGA | 4 cut(s) | 241, 316, 330, 2097 |
| CfoI | GCGC | 2 cut(s) | 678, 3122 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 3 cut(s) | 1488, 1994, 2924 |
| Csp6I | GTAC | 5 cut(s) | 1658, 2070, 2371, 2732, 2862 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1213, 1248 |
| CviQI | GTAC | 5 cut(s) | 1658, 2070, 2371, 2732, 2862 |
| DpnI | GATC | 8 cut(s) | 217, 540, 781, 842, 1236, 2478, 2530, 2898 |
| DpnII | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| DraI | TTTAAA | 1 cut(s) | 666 |
| DraIII | CACNNNGTG | 1 cut(s) | 2843 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1432 |
| Eam1104I | CTCTTC | 7 cut(s) | 690, 850, 1078, 1173, 1377, 1617, 2340 |
| EarI | CTCTTC | 7 cut(s) | 690, 850, 1078, 1173, 1377, 1617, 2340 |
| Ecl136II | GAGCTC | 2 cut(s) | 1398, 3095 |
| Eco130I | CCWWGG | 2 cut(s) | 2706, 2892 |
| Eco24I | GRGCYC | 4 cut(s) | 1073, 1400, 2292, 3097 |
| Eco32I | GATATC | 1 cut(s) | 2024 |
| Eco47I | GGWCC | 2 cut(s) | 1994, 2924 |
| Eco53kI | GAGCTC | 2 cut(s) | 1398, 3095 |
| Eco57I | CTGAAG | 3 cut(s) | 714, 1358, 1812 |
| EcoICRI | GAGCTC | 2 cut(s) | 1398, 3095 |
| EcoRII | CCWGG | 3 cut(s) | 155, 2792, 2878 |
| EcoRV | GATATC | 1 cut(s) | 2024 |
| EcoT14I | CCWWGG | 2 cut(s) | 2706, 2892 |
| EcoT22I | ATGCAT | 3 cut(s) | 808, 1692, 2564 |
| EcoT38I | GRGCYC | 4 cut(s) | 1073, 1400, 2292, 3097 |
| ErhI | CCWWGG | 2 cut(s) | 2706, 2892 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2337, 2369, 2426, 2458 |
| FaqI | GGGAC | 3 cut(s) | 186, 949, 2910 |
| FauNDI | CATATG | 2 cut(s) | 1359, 2679 |
| FblI | GTMKAC | 2 cut(s) | 1436, 2078 |
| FokI | GGATG | 9 cut(s) | 149, 224, 1353, 1368, 1531, 1803, 2739, 2931, 2997 |
| FriOI | GRGCYC | 4 cut(s) | 1073, 1400, 2292, 3097 |
| FspBI | CTAG | 5 cut(s) | 105, 441, 2004, 2474, 2685 |
| GlaI | GCGC | 2 cut(s) | 677, 3121 |
| GsaI | CCCAGC | 1 cut(s) | 777 |
| GsuI | CTGGAG | 1 cut(s) | 2776 |
| HaeII | RGCGCY | 1 cut(s) | 3123 |
| HaeIII | GGCC | 1 cut(s) | 1490 |
| HapII | CCGG | 2 cut(s) | 14, 1415 |
| HhaI | GCGC | 2 cut(s) | 678, 3122 |
| Hin6I | GCGC | 2 cut(s) | 676, 3120 |
| HinP1I | GCGC | 2 cut(s) | 676, 3120 |
| HincII | GTYRAC | 1 cut(s) | 3004 |
| HindII | GTYRAC | 1 cut(s) | 3004 |
| HindIII | AAGCTT | 4 cut(s) | 1899, 2139, 2346, 2537 |
| HpaI | GTTAAC | 1 cut(s) | 3004 |
| HpaII | CCGG | 2 cut(s) | 14, 1415 |
| HphI | GGTGA | 4 cut(s) | 75, 1992, 2457, 2722 |
| Hpy166II | GTNNAC | 7 cut(s) | 357, 395, 1437, 1583, 1907, 2079, 3004 |
| Hpy188III | TCNNGA | 7 cut(s) | 242, 317, 331, 892, 1766, 2098, 2948 |
| Hpy8I | GTNNAC | 7 cut(s) | 357, 395, 1437, 1583, 1907, 2079, 3004 |
| HpyAV | CCTTC | 5 cut(s) | 1571, 1836, 1947, 2012, 3022 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 68, 698, 749, 803, 1108, 3126 |
| HspAI | GCGC | 2 cut(s) | 676, 3120 |
| KpnI | GGTACC | 2 cut(s) | 2374, 2865 |
| KroI | GCCGGC | 1 cut(s) | 13 |
| KroNI | GCCGGC | 1 cut(s) | 15 |
| KspAI | GTTAAC | 1 cut(s) | 3004 |
| Kzo9I | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| LguI | GCTCTTC | 2 cut(s) | 1078, 1173 |
| LmnI | GCTCC | 5 cut(s) | 683, 733, 1828, 3092, 3117 |
| LweI | GCATC | 5 cut(s) | 760, 815, 1699, 2260, 2774 |
| MaeI | CTAG | 5 cut(s) | 105, 441, 2004, 2474, 2685 |
| MalI | GATC | 8 cut(s) | 217, 540, 781, 842, 1236, 2478, 2530, 2898 |
| MboI | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| MfeI | CAATTG | 1 cut(s) | 683 |
| MflI | RGATCY | 2 cut(s) | 215, 2528 |
| MhlI | GDGCHC | 5 cut(s) | 1073, 1168, 1400, 2292, 3097 |
| MlyI | GAGTC | 7 cut(s) | 328, 506, 1475, 1742, 2060, 2668, 2690 |
| MmeI | TCCRAC | 2 cut(s) | 535, 3070 |
| Mph1103I | ATGCAT | 3 cut(s) | 808, 1692, 2564 |
| MroNI | GCCGGC | 1 cut(s) | 13 |
| MroXI | GAANNNNTTC | 2 cut(s) | 962, 1974 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1526, 1983, 2379 |
| MspCI | CTTAAG | 1 cut(s) | 2231 |
| MspI | CCGG | 2 cut(s) | 14, 1415 |
| MspR9I | CCNGG | 3 cut(s) | 157, 2794, 2880 |
| MunI | CAATTG | 1 cut(s) | 683 |
| Mva1269I | GAATGC | 4 cut(s) | 1603, 2415, 2564, 3131 |
| MvaI | CCWGG | 3 cut(s) | 157, 2794, 2880 |
| MvnI | CGCG | 1 cut(s) | 1432 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 68, 698, 749, 803, 1108, 3126 |
| NaeI | GCCGGC | 1 cut(s) | 15 |
| NcoI | CCATGG | 1 cut(s) | 2892 |
| NdeI | CATATG | 2 cut(s) | 1359, 2679 |
| NdeII | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| NgoMIV | GCCGGC | 1 cut(s) | 13 |
| NmeAIII | GCCGAG | 1 cut(s) | 2617 |
| NmuCI | GTSAC | 6 cut(s) | 81, 121, 1558, 1759, 1998, 2710 |
| NsiI | ATGCAT | 3 cut(s) | 808, 1692, 2564 |
| NspI | RCATGY | 4 cut(s) | 1328, 1658, 2645, 2905 |
| PagI | TCATGA | 4 cut(s) | 241, 316, 330, 2097 |
| PciI | ACATGT | 2 cut(s) | 1654, 2901 |
| PciSI | GCTCTTC | 2 cut(s) | 1078, 1173 |
| PctI | GAATGC | 4 cut(s) | 1603, 2415, 2564, 3131 |
| PdiI | GCCGGC | 1 cut(s) | 15 |
| PdmI | GAANNNNTTC | 2 cut(s) | 962, 1974 |
| PfeI | GAWTC | 7 cut(s) | 100, 140, 245, 251, 313, 652, 2798 |
| PflFI | GACNNNGTC | 1 cut(s) | 1757 |
| PleI | GAGTC | 7 cut(s) | 328, 505, 1475, 1741, 2059, 2668, 2690 |
| PpsI | GAGTC | 7 cut(s) | 328, 505, 1475, 1741, 2059, 2668, 2690 |
| PscI | ACATGT | 2 cut(s) | 1654, 2901 |
| PshBI | ATTAAT | 2 cut(s) | 2214, 2403 |
| PsiI | TTATAA | 2 cut(s) | 638, 942 |
| Psp124BI | GAGCTC | 2 cut(s) | 1400, 3097 |
| Psp6I | CCWGG | 3 cut(s) | 155, 2792, 2878 |
| PspFI | CCCAGC | 1 cut(s) | 773 |
| PspGI | CCWGG | 3 cut(s) | 155, 2792, 2878 |
| PspPI | GGNCC | 3 cut(s) | 1488, 1994, 2924 |
| PstI | CTGCAG | 1 cut(s) | 519 |
| PsuI | RGATCY | 2 cut(s) | 215, 2528 |
| PsyI | GACNNNGTC | 1 cut(s) | 1757 |
| RsaI | GTAC | 5 cut(s) | 1659, 2071, 2372, 2733, 2863 |
| RsaNI | GTAC | 5 cut(s) | 1658, 2070, 2371, 2732, 2862 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1526, 1983, 2379 |
| SacI | GAGCTC | 2 cut(s) | 1400, 3097 |
| SapI | GCTCTTC | 2 cut(s) | 1078, 1173 |
| Sau3AI | GATC | 8 cut(s) | 215, 538, 779, 840, 1234, 2476, 2528, 2896 |
| Sau96I | GGNCC | 3 cut(s) | 1488, 1994, 2924 |
| SchI | GAGTC | 7 cut(s) | 328, 506, 1475, 1742, 2060, 2668, 2690 |
| ScrFI | CCNGG | 3 cut(s) | 157, 2794, 2880 |
| SduI | GDGCHC | 5 cut(s) | 1073, 1168, 1400, 2292, 3097 |
| SfaNI | GCATC | 5 cut(s) | 760, 815, 1699, 2260, 2774 |
| SfcI | CTRYAG | 3 cut(s) | 515, 532, 1956 |
| SinI | GGWCC | 2 cut(s) | 1994, 2924 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1526, 1983, 2379 |
| SmlI | CTYRAG | 2 cut(s) | 2231, 2964 |
| SmoI | CTYRAG | 2 cut(s) | 2231, 2964 |
| SsiI | CCGC | 3 cut(s) | 795, 1432, 2810 |
| SspI | AATATT | 1 cut(s) | 2178 |
| SspMI | CTAG | 5 cut(s) | 105, 441, 2004, 2474, 2685 |
| SstI | GAGCTC | 2 cut(s) | 1400, 3097 |
| StyD4I | CCNGG | 3 cut(s) | 155, 2792, 2878 |
| StyI | CCWWGG | 2 cut(s) | 2706, 2892 |
| TaqI | TCGA | 4 cut(s) | 1237, 1256, 1780, 2407 |
| TatI | WGTACW | 1 cut(s) | 2069 |
| TauI | GCSGC | 1 cut(s) | 797 |
| TfiI | GAWTC | 7 cut(s) | 100, 140, 245, 251, 313, 652, 2798 |
| TseFI | GTSAC | 6 cut(s) | 81, 121, 1558, 1759, 1998, 2710 |
| Tsp45I | GTSAC | 6 cut(s) | 81, 121, 1558, 1759, 1998, 2710 |
| TspGWI | ACGGA | 2 cut(s) | 1986, 2499 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1757 |
| Vha464I | CTTAAG | 1 cut(s) | 2231 |
| VpaK11BI | GGWCC | 2 cut(s) | 1994, 2924 |
| VspI | ATTAAT | 2 cut(s) | 2214, 2403 |
| XapI | RAATTY | 7 cut(s) | 160, 195, 989, 1194, 1916, 2152, 2224 |
| XceI | RCATGY | 4 cut(s) | 1328, 1658, 2645, 2905 |
| XmiI | GTMKAC | 2 cut(s) | 1436, 2078 |
| XmnI | GAANNNNTTC | 2 cut(s) | 962, 1974 |
| XspI | CTAG | 5 cut(s) | 105, 441, 2004, 2474, 2685 |
| Zsp2I | ATGCAT | 3 cut(s) | 808, 1692, 2564 |