gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 17 - 120 | 5.5e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 79 |
| AciI | CCGC | 2 cut(s) | 79, 332 |
| AclWI | GGATC | 2 cut(s) | 349, 400 |
| AcoI | YGGCCR | 1 cut(s) | 235 |
| AcuI | CTGAAG | 1 cut(s) | 284 |
| AcyI | GRCGYC | 1 cut(s) | 82 |
| AfaI | GTAC | 2 cut(s) | 388, 399 |
| AflIII | ACRYGT | 1 cut(s) | 51 |
| AgsI | TTSAA | 3 cut(s) | 58, 68, 118 |
| AluBI | AGCT | 3 cut(s) | 130, 199, 276 |
| AluI | AGCT | 3 cut(s) | 130, 199, 276 |
| Alw26I | GTCTC | 2 cut(s) | 355, 362 |
| AlwI | GGATC | 2 cut(s) | 349, 400 |
| Ama87I | CYCGRG | 1 cut(s) | 180 |
| AoxI | GGCC | 1 cut(s) | 235 |
| ApeKI | GCWGC | 2 cut(s) | 151, 335 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AvaI | CYCGRG | 1 cut(s) | 180 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BalI | TGGCCA | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BbvI | GCAGC | 2 cut(s) | 138, 322 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 311, 345 |
| BcoDI | GTCTC | 2 cut(s) | 355, 362 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BisI | GCNGC | 4 cut(s) | 80, 152, 333, 336 |
| BlsI | GCNGC | 4 cut(s) | 81, 153, 334, 337 |
| BmcAI | AGTACT | 1 cut(s) | 399 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmeT110I | CYCGRG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 158 |
| BpmI | CTGGAG | 1 cut(s) | 348 |
| BsaHI | GRCGYC | 1 cut(s) | 82 |
| BsaI | GGTCTC | 2 cut(s) | 355, 362 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 232 |
| BsaWI | WCCGGW | 1 cut(s) | 346 |
| Bse3DI | GCAATG | 1 cut(s) | 153 |
| BseDI | CCNNGG | 2 cut(s) | 141, 232 |
| BseGI | GGATG | 1 cut(s) | 173 |
| BseMI | GCAATG | 1 cut(s) | 153 |
| BseXI | GCAGC | 2 cut(s) | 138, 322 |
| BshFI | GGCC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 1 cut(s) | 180 |
| BsiSI | CCGG | 1 cut(s) | 347 |
| BslFI | GGGAC | 3 cut(s) | 85, 116, 274 |
| BsmAI | GTCTC | 2 cut(s) | 355, 362 |
| BsmFI | GGGAC | 3 cut(s) | 85, 116, 274 |
| BsnI | GGCC | 1 cut(s) | 237 |
| Bso31I | GGTCTC | 2 cut(s) | 355, 362 |
| BsoBI | CYCGRG | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 3 cut(s) | 224, 341, 405 |
| BspACI | CCGC | 2 cut(s) | 79, 332 |
| BspANI | GGCC | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspLI | GGNNCC | 1 cut(s) | 104 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspPI | GGATC | 2 cut(s) | 349, 400 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BspTNI | GGTCTC | 2 cut(s) | 355, 362 |
| BsrBI | CCGCTC | 1 cut(s) | 79 |
| BsrDI | GCAATG | 1 cut(s) | 153 |
| BssECI | CCNNGG | 2 cut(s) | 141, 232 |
| BssMI | GATC | 3 cut(s) | 224, 341, 405 |
| BssNI | GRCGYC | 1 cut(s) | 82 |
| BssT1I | CCWWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 1 cut(s) | 397 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstACI | GRCGYC | 1 cut(s) | 82 |
| BstC8I | GCNNGC | 1 cut(s) | 330 |
| BstF5I | GGATG | 1 cut(s) | 173 |
| BstKTI | GATC | 3 cut(s) | 227, 344, 408 |
| BstMAI | GTCTC | 2 cut(s) | 355, 362 |
| BstMBI | GATC | 3 cut(s) | 224, 341, 405 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 205, 282 |
| BstNSI | RCATGY | 2 cut(s) | 55, 289 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 2 cut(s) | 138, 322 |
| BstX2I | RGATCY | 1 cut(s) | 341 |
| BstYI | RGATCY | 1 cut(s) | 341 |
| BsuRI | GGCC | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 173 |
| Cac8I | GCNNGC | 1 cut(s) | 330 |
| CciI | TCATGA | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| CseI | GACGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 2 cut(s) | 387, 398 |
| CviAII | CATG | 3 cut(s) | 52, 280, 286 |
| CviJI | RGCY | 8 cut(s) | 130, 185, 193, 199, 237, 276, 328, 335 |
| CviKI_1 | RGCY | 8 cut(s) | 130, 185, 193, 199, 237, 276, 328, 335 |
| CviQI | GTAC | 2 cut(s) | 387, 398 |
| DpnI | GATC | 3 cut(s) | 226, 343, 407 |
| DpnII | GATC | 3 cut(s) | 224, 341, 405 |
| EaeI | YGGCCR | 1 cut(s) | 235 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 1 cut(s) | 232 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco31I | GGTCTC | 2 cut(s) | 355, 362 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 284 |
| Eco88I | CYCGRG | 1 cut(s) | 180 |
| EcoT14I | CCWWGG | 1 cut(s) | 232 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 232 |
| FaeI | CATG | 3 cut(s) | 55, 283, 289 |
| FaiI | YATR | 7 cut(s) | 24, 35, 48, 53, 99, 281, 287 |
| FaqI | GGGAC | 3 cut(s) | 85, 116, 274 |
| FatI | CATG | 3 cut(s) | 51, 279, 285 |
| Fnu4HI | GCNGC | 4 cut(s) | 80, 152, 333, 336 |
| FokI | GGATG | 1 cut(s) | 180 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 4 cut(s) | 80, 152, 333, 336 |
| GluI | GCNGC | 4 cut(s) | 80, 152, 333, 336 |
| GsuI | CTGGAG | 1 cut(s) | 348 |
| HaeIII | GGCC | 1 cut(s) | 237 |
| HapII | CCGG | 1 cut(s) | 347 |
| HgaI | GACGC | 1 cut(s) | 71 |
| Hin1I | GRCGYC | 1 cut(s) | 82 |
| Hin1II | CATG | 3 cut(s) | 55, 283, 289 |
| HindIII | AAGCTT | 1 cut(s) | 274 |
| HinfI | GANTC | 1 cut(s) | 359 |
| HpaII | CCGG | 1 cut(s) | 347 |
| Hpy166II | GTNNAC | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 355 |
| Hpy188III | TCNNGA | 2 cut(s) | 280, 365 |
| Hpy8I | GTNNAC | 1 cut(s) | 86 |
| HpyCH4III | ACNGT | 1 cut(s) | 397 |
| HpyCH4V | TGCA | 2 cut(s) | 221, 338 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 205, 282 |
| Hsp92I | GRCGYC | 1 cut(s) | 82 |
| Hsp92II | CATG | 3 cut(s) | 55, 283, 289 |
| Kzo9I | GATC | 3 cut(s) | 224, 341, 405 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LpnPI | CCDG | 8 cut(s) | 18, 185, 200, 251, 310, 324, 360, 378 |
| Lsp1109I | GCAGC | 2 cut(s) | 138, 322 |
| LweI | GCATC | 1 cut(s) | 158 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 3 cut(s) | 226, 343, 407 |
| MbiI | CCGCTC | 1 cut(s) | 79 |
| MboI | GATC | 3 cut(s) | 224, 341, 405 |
| MboII | GAAGA | 2 cut(s) | 215, 277 |
| MflI | RGATCY | 1 cut(s) | 341 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MlsI | TGGCCA | 1 cut(s) | 237 |
| MluCI | AATT | 2 cut(s) | 109, 216 |
| MluNI | TGGCCA | 1 cut(s) | 237 |
| MnlI | CCTC | 3 cut(s) | 136, 263, 377 |
| Mox20I | TGGCCA | 1 cut(s) | 237 |
| MscI | TGGCCA | 1 cut(s) | 237 |
| MslI | CAYNNNNRTG | 1 cut(s) | 284 |
| Msp20I | TGGCCA | 1 cut(s) | 237 |
| MspI | CCGG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 205, 282 |
| NdeII | GATC | 3 cut(s) | 224, 341, 405 |
| NlaIII | CATG | 3 cut(s) | 55, 283, 289 |
| NlaIV | GGNNCC | 1 cut(s) | 104 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| NspI | RCATGY | 2 cut(s) | 55, 289 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PciI | ACATGT | 1 cut(s) | 51 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 1 cut(s) | 359 |
| PkrI | GCNGC | 4 cut(s) | 81, 153, 334, 337 |
| PscI | ACATGT | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 1 cut(s) | 104 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 341 |
| RsaI | GTAC | 2 cut(s) | 388, 399 |
| RsaNI | GTAC | 2 cut(s) | 387, 398 |
| RseI | CAYNNNNRTG | 1 cut(s) | 284 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SatI | GCNGC | 4 cut(s) | 80, 152, 333, 336 |
| Sau3AI | GATC | 3 cut(s) | 224, 341, 405 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| ScaI | AGTACT | 1 cut(s) | 399 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SetI | ASST | 4 cut(s) | 132, 201, 278, 388 |
| SfaNI | GCATC | 1 cut(s) | 158 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 103 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 284 |
| Sse9I | AATT | 2 cut(s) | 109, 216 |
| SsiI | CCGC | 2 cut(s) | 79, 332 |
| StyI | CCWWGG | 1 cut(s) | 232 |
| TaaI | ACNGT | 1 cut(s) | 397 |
| TasI | AATT | 2 cut(s) | 109, 216 |
| TatI | WGTACW | 1 cut(s) | 397 |
| TauI | GCSGC | 2 cut(s) | 82, 335 |
| TfiI | GAWTC | 1 cut(s) | 359 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 2 cut(s) | 151, 335 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 3 cut(s) | 50, 112, 268 |
| TspGWI | ACGGA | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XceI | RCATGY | 2 cut(s) | 55, 289 |
| ZrmI | AGTACT | 1 cut(s) | 399 |