gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 135 - 170 | 5.8e-06 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 474 |
| AarI | CACCTGC | 2 cut(s) | 74, 248 |
| Acc36I | ACCTGC | 2 cut(s) | 74, 248 |
| AccB1I | GGYRCC | 1 cut(s) | 185 |
| AciI | CCGC | 1 cut(s) | 66 |
| AcsI | RAATTY | 1 cut(s) | 523 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 68, 72, 182, 417 |
| AgeI | ACCGGT | 1 cut(s) | 5 |
| AgsI | TTSAA | 3 cut(s) | 123, 449, 494 |
| AhlI | ACTAGT | 1 cut(s) | 437 |
| AjnI | CCWGG | 2 cut(s) | 175, 188 |
| Alw26I | GTCTC | 2 cut(s) | 28, 213 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 539 |
| AoxI | GGCC | 1 cut(s) | 420 |
| ApeKI | GCWGC | 1 cut(s) | 229 |
| ApoI | RAATTY | 1 cut(s) | 523 |
| AsiGI | ACCGGT | 1 cut(s) | 5 |
| AspS9I | GGNCC | 1 cut(s) | 420 |
| AsuC2I | CCSGG | 1 cut(s) | 418 |
| AsuHPI | GGTGA | 2 cut(s) | 326, 339 |
| BanI | GGYRCC | 1 cut(s) | 185 |
| BbvI | GCAGC | 1 cut(s) | 241 |
| BccI | CCATC | 1 cut(s) | 370 |
| BciT130I | CCWGG | 2 cut(s) | 177, 190 |
| BcnI | CCSGG | 1 cut(s) | 418 |
| BcoDI | GTCTC | 2 cut(s) | 28, 213 |
| BcuI | ACTAGT | 1 cut(s) | 437 |
| BfaI | CTAG | 2 cut(s) | 330, 438 |
| BfuAI | ACCTGC | 2 cut(s) | 74, 248 |
| BisI | GCNGC | 1 cut(s) | 230 |
| BlsI | GCNGC | 1 cut(s) | 231 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 190, 418 |
| BmgT120I | GGNCC | 1 cut(s) | 420 |
| BmiI | GGNNCC | 2 cut(s) | 187, 421 |
| BmrFI | CCNGG | 3 cut(s) | 177, 190, 418 |
| BmsI | GCATC | 2 cut(s) | 106, 386 |
| BpuMI | CCSGG | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 1 cut(s) | 417 |
| BsaWI | WCCGGW | 1 cut(s) | 5 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 25, 55 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 68, 72, 182, 417 |
| Bse118I | RCCGGY | 1 cut(s) | 5 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseBI | CCWGG | 2 cut(s) | 177, 190 |
| BseDI | CCNNGG | 1 cut(s) | 417 |
| BseGI | GGATG | 2 cut(s) | 358, 377 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 68, 72, 182, 417 |
| BseMII | CTCAG | 2 cut(s) | 224, 531 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BseXI | GCAGC | 1 cut(s) | 241 |
| BseYI | CCCAGC | 1 cut(s) | 515 |
| BsgI | GTGCAG | 1 cut(s) | 248 |
| BshFI | GGCC | 1 cut(s) | 422 |
| BshNI | GGYRCC | 1 cut(s) | 185 |
| BshTI | ACCGGT | 1 cut(s) | 5 |
| BsiSI | CCGG | 2 cut(s) | 6, 417 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 68, 72, 182, 417 |
| BsmAI | GTCTC | 2 cut(s) | 28, 213 |
| BsnI | GGCC | 1 cut(s) | 422 |
| BspACI | CCGC | 1 cut(s) | 66 |
| BspANI | GGCC | 1 cut(s) | 422 |
| BspCNI | CTCAG | 2 cut(s) | 223, 532 |
| BspLI | GGNNCC | 2 cut(s) | 187, 421 |
| BspMI | ACCTGC | 2 cut(s) | 74, 248 |
| BspT107I | GGYRCC | 1 cut(s) | 185 |
| BsrFI | RCCGGY | 1 cut(s) | 5 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssAI | RCCGGY | 1 cut(s) | 5 |
| BssECI | CCNNGG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 2 cut(s) | 177, 190 |
| Bst4CI | ACNGT | 3 cut(s) | 138, 165, 490 |
| Bst6I | CTCTTC | 1 cut(s) | 388 |
| BstC8I | GCNNGC | 2 cut(s) | 375, 408 |
| BstDEI | CTNAG | 2 cut(s) | 210, 540 |
| BstF5I | GGATG | 2 cut(s) | 358, 377 |
| BstMAI | GTCTC | 2 cut(s) | 28, 213 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 374 |
| BstNI | CCWGG | 2 cut(s) | 177, 190 |
| BstSCI | CCNGG | 3 cut(s) | 175, 188, 416 |
| BstV1I | GCAGC | 1 cut(s) | 241 |
| BsuRI | GGCC | 1 cut(s) | 422 |
| BtsCI | GGATG | 2 cut(s) | 358, 377 |
| BveI | ACCTGC | 2 cut(s) | 74, 248 |
| Cac8I | GCNNGC | 2 cut(s) | 375, 408 |
| CaiI | CAGNNNCTG | 1 cut(s) | 539 |
| Cfr10I | RCCGGY | 1 cut(s) | 5 |
| Cfr13I | GGNCC | 1 cut(s) | 420 |
| CsiI | ACCWGGT | 1 cut(s) | 175 |
| CspAI | ACCGGT | 1 cut(s) | 5 |
| CviAII | CATG | 3 cut(s) | 182, 370, 433 |
| CviJI | RGCY | 5 cut(s) | 78, 232, 389, 406, 422 |
| CviKI_1 | RGCY | 5 cut(s) | 78, 232, 389, 406, 422 |
| DdeI | CTNAG | 2 cut(s) | 210, 540 |
| Eam1104I | CTCTTC | 1 cut(s) | 388 |
| EarI | CTCTTC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| EcoRII | CCWGG | 2 cut(s) | 175, 188 |
| FaeI | CATG | 3 cut(s) | 185, 373, 436 |
| FaiI | YATR | 6 cut(s) | 183, 294, 315, 371, 434, 474 |
| FatI | CATG | 3 cut(s) | 181, 369, 432 |
| Fnu4HI | GCNGC | 1 cut(s) | 230 |
| FokI | GGATG | 2 cut(s) | 345, 364 |
| Fsp4HI | GCNGC | 1 cut(s) | 230 |
| FspBI | CTAG | 2 cut(s) | 330, 438 |
| GluI | GCNGC | 1 cut(s) | 230 |
| GsaI | CCCAGC | 1 cut(s) | 519 |
| HaeIII | GGCC | 1 cut(s) | 422 |
| HapII | CCGG | 2 cut(s) | 6, 417 |
| Hin1II | CATG | 3 cut(s) | 185, 373, 436 |
| HincII | GTYRAC | 1 cut(s) | 161 |
| HindII | GTYRAC | 1 cut(s) | 161 |
| HinfI | GANTC | 2 cut(s) | 289, 413 |
| HpaII | CCGG | 2 cut(s) | 6, 417 |
| HphI | GGTGA | 2 cut(s) | 326, 339 |
| Hpy166II | GTNNAC | 1 cut(s) | 161 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 201, 484 |
| Hpy188III | TCNNGA | 1 cut(s) | 141 |
| Hpy8I | GTNNAC | 1 cut(s) | 161 |
| HpyCH4III | ACNGT | 3 cut(s) | 138, 165, 490 |
| HpyCH4V | TGCA | 6 cut(s) | 83, 229, 257, 279, 377, 467 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 374 |
| HpyF3I | CTNAG | 2 cut(s) | 210, 540 |
| Hsp92II | CATG | 3 cut(s) | 185, 373, 436 |
| Lsp1109I | GCAGC | 1 cut(s) | 241 |
| LweI | GCATC | 2 cut(s) | 106, 386 |
| MabI | ACCWGGT | 1 cut(s) | 175 |
| MaeI | CTAG | 2 cut(s) | 330, 438 |
| MaeIII | GTNAC | 2 cut(s) | 241, 332 |
| MboII | GAAGA | 3 cut(s) | 295, 298, 375 |
| MfeI | CAATTG | 1 cut(s) | 449 |
| MluCI | AATT | 3 cut(s) | 398, 449, 523 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MmeI | TCCRAC | 2 cut(s) | 125, 179 |
| MnlI | CCTC | 8 cut(s) | 17, 21, 47, 243, 360, 391, 405, 490 |
| MseI | TTAA | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 6, 417 |
| MspR9I | CCNGG | 3 cut(s) | 177, 190, 418 |
| MunI | CAATTG | 1 cut(s) | 449 |
| MvaI | CCWGG | 2 cut(s) | 177, 190 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 374 |
| NciI | CCSGG | 1 cut(s) | 418 |
| NlaIII | CATG | 3 cut(s) | 185, 373, 436 |
| NlaIV | GGNNCC | 2 cut(s) | 187, 421 |
| NmuCI | GTSAC | 1 cut(s) | 332 |
| PaqCI | CACCTGC | 2 cut(s) | 74, 248 |
| PfeI | GAWTC | 1 cut(s) | 289 |
| PflFI | GACNNNGTC | 1 cut(s) | 205 |
| PinAI | ACCGGT | 1 cut(s) | 5 |
| PkrI | GCNGC | 1 cut(s) | 231 |
| PleI | GAGTC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 407 |
| PsiI | TTATAA | 1 cut(s) | 474 |
| Psp6I | CCWGG | 2 cut(s) | 175, 188 |
| PspFI | CCCAGC | 1 cut(s) | 515 |
| PspGI | CCWGG | 2 cut(s) | 175, 188 |
| PspN4I | GGNNCC | 2 cut(s) | 187, 421 |
| PspPI | GGNCC | 1 cut(s) | 420 |
| PstNI | CAGNNNCTG | 1 cut(s) | 539 |
| PsyI | GACNNNGTC | 1 cut(s) | 205 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 1 cut(s) | 230 |
| Sau96I | GGNCC | 1 cut(s) | 420 |
| SchI | GAGTC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 3 cut(s) | 177, 190, 418 |
| SexAI | ACCWGGT | 1 cut(s) | 175 |
| SfaNI | GCATC | 2 cut(s) | 106, 386 |
| SpeI | ACTAGT | 1 cut(s) | 437 |
| Sse9I | AATT | 3 cut(s) | 398, 449, 523 |
| SsiI | CCGC | 1 cut(s) | 66 |
| SspMI | CTAG | 2 cut(s) | 330, 438 |
| StyD4I | CCNGG | 3 cut(s) | 175, 188, 416 |
| TaaI | ACNGT | 3 cut(s) | 138, 165, 490 |
| TasI | AATT | 3 cut(s) | 398, 449, 523 |
| TfiI | GAWTC | 1 cut(s) | 289 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TseFI | GTSAC | 1 cut(s) | 332 |
| TseI | GCWGC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 1 cut(s) | 347 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| Tth111I | GACNNNGTC | 1 cut(s) | 205 |
| XapI | RAATTY | 1 cut(s) | 523 |
| XspI | CTAG | 2 cut(s) | 330, 438 |