Rw0G005640

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00223
OG0000034
Physical Location & Seq
Forward (+)
55032 .. 56361
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005640.1

Sequence Viewer

Length: 1149 bp
ATGGCTCCTTCTTCCTCTTCCCACCCCTCTACCCCCACCCAAAACACTTCCCAGTTCCTCAAACTTACTGAAACCAATTACTTAGTGTGGCTCCGACAGATCAAACCTTACCTCCGTGGTGCCAATCTTTGGGGCTATGTGGATGGCACCATTCCAGAGCCACCCACCATCATCCCCACTCCTGCCACCACTGCTTCTCCGGCTACGACTATTTCTAACCCTGAGCATGACAAATGGGTTACCGTTGATCAACAAATTGTGAGCATTCTCAATACCTCCTTAACTGAAAACATAGCTCGTCTTACCGTTGGATTCGACACTTCCAAATCCATCTGGGACTGTTTGTCTAGCCATTTTGCTCAGAAGTCTGCTGCCAGTGCCACAAGTCTCAAGCTTCAGCTTTTTGATCTCAACAAGGGCACCCAAACTGTTGATGCATATCTCCAACAAGCAAAGTCCATTGCTGACTCTCTGGCCTCCATCAATCAACCGGTTTCTGATGCCGATCTTGTCGTCGCCACACTCCATGGCCTTGGTCAGGAATACCTCATGCTGCGTACGGCGCTTGCCCAGTCTACTCTCCCTGATTTTTCTGGTCTCCGTGCAAGGATCTTGGCCTTCGAAGCTCAACAACCTGTTCGTCCCATAAATTCCCCTGCTTCAGCCTTATTTCATCATGGTTCCGCCGTCGAAGCCCAGCCACGAACGGATCTCCAGTCCCGTGGTCCTCCTCCACACCGTGACGGCCGTCGCAGCTTCCCCGGCGGACGCAACTACCAACGCCGTCGTGGAGGTGCGTCTCGCCCTTTCCCCACAATGCCATCGCAGCCTGTCTTTTCTTCTTCTTCTTGGAACACCCGTCCTAATTGGCAGAGTGGGCTTTTAGGCCCAAGTCCACAGTGGTGTCCGAACTGCCACACAAATCAGCATCATCTCTCTCAGTGTCCACATCGTTTCACTGGCCCATCCACTGCCCCTCCCTTTGCTGGTGCCCATTTTTTGGGTGATCCTACTTGGTATCCTGATACTGGTGCAACTCATCACATGACGGCAATGCCACTTCAACATTCTCAATCTTATGGTGGTCCTCATAACGTTTATATGGGTAATGGTGATTCTATGCCAGTCACTCATTCTGGGCCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

382

Amino Acids

41.58

Weight (kDa)

8.9

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 37 - 209 5.9e-17 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 119, 146, 419, 989
AccB7I CCANNNNNTGG 2 cut(s) 129, 1000
AccI GTMKAC 1 cut(s) 575
AciI CCGC 2 cut(s) 684, 765
AclI AACGTT 1 cut(s) 1095
AclWI GGATC 3 cut(s) 617, 717, 1001
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 2 cut(s) 380, 645
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 5 cut(s) 129, 538, 986, 1000, 1028
AgeI ACCGGT 1 cut(s) 490
AgsI TTSAA 1 cut(s) 1064
AhdI GACNNNNNGTC 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 901
AluBI AGCT 5 cut(s) 296, 394, 400, 626, 756
AluI AGCT 5 cut(s) 296, 394, 400, 626, 756
Alw26I GTCTC 3 cut(s) 392, 602, 804
AlwI GGATC 3 cut(s) 617, 717, 1001
AoxI GGCC 7 cut(s) 474, 529, 615, 745, 886, 961, 1139
ApaI GGGCCC 1 cut(s) 1143
ApeKI GCWGC 4 cut(s) 371, 553, 753, 826
ApoI RAATTY 1 cut(s) 649
AsiGI ACCGGT 1 cut(s) 490
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 6 cut(s) 725, 887, 962, 1085, 1139, 1140
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 2 cut(s) 1016, 1124
AsuII TTCGAA 1 cut(s) 621
AvaII GGWCC 2 cut(s) 725, 1085
BaeGI GKGCMC 3 cut(s) 422, 994, 1143
BanI GGYRCC 4 cut(s) 119, 146, 419, 989
BanII GRGCYC 1 cut(s) 1143
BbvI GCAGC 4 cut(s) 358, 540, 765, 838
BccI CCATC 6 cut(s) 137, 176, 338, 488, 829, 973
BceAI ACGGC 6 cut(s) 576, 671, 732, 760, 768, 1065
BciVI GTATCC 1 cut(s) 1029
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 3 cut(s) 392, 602, 804
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 566
BfuI GTATCC 1 cut(s) 1029
BisI GCNGC 4 cut(s) 372, 554, 754, 827
BlsI GCNGC 4 cut(s) 373, 555, 755, 828
Bme1390I CCNGG 1 cut(s) 762
Bme18I GGWCC 2 cut(s) 725, 1085
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 725, 887, 962, 1085, 1139, 1140
BmiI GGNNCC 8 cut(s) 6, 92, 121, 148, 421, 682, 991, 1141
BmrFI CCNGG 1 cut(s) 762
BmrI ACTGGG 2 cut(s) 46, 565
BmsI GCATC 3 cut(s) 424, 490, 937
BmuI ACTGGG 2 cut(s) 46, 565
BoxI GACNNNNGTC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 762
BsaBI GATNNNNATC 2 cut(s) 438, 504
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 5 cut(s) 115, 526, 532, 721, 760
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 6 cut(s) 96, 126, 181, 211, 961, 991
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 538, 986, 1000, 1028
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 7 cut(s) 52, 375, 571, 715, 964, 1033, 1124
Bse3DI GCAATG 2 cut(s) 459, 1059
Bse8I GATNNNNATC 2 cut(s) 438, 504
BseDI CCNNGG 5 cut(s) 115, 526, 532, 721, 760
BseGI GGATG 3 cut(s) 148, 171, 965
BseJI GATNNNNATC 2 cut(s) 438, 504
BseLI CCNNNNNNNGG 5 cut(s) 129, 538, 986, 1000, 1028
BseMI GCAATG 2 cut(s) 459, 1059
BseMII CTCAG 3 cut(s) 213, 374, 953
BseNI ACTGG 7 cut(s) 52, 375, 571, 715, 964, 1033, 1124
BseRI GAGGAG 1 cut(s) 720
BseSI GKGCMC 3 cut(s) 422, 994, 1143
BseX3I CGGCCG 1 cut(s) 745
BseXI GCAGC 4 cut(s) 358, 540, 765, 838
BseYI CCCAGC 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 748
BshFI GGCC 7 cut(s) 476, 531, 617, 747, 888, 963, 1141
BshNI GGYRCC 4 cut(s) 119, 146, 419, 989
BshTI ACCGGT 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 748
BsiSI CCGG 3 cut(s) 200, 491, 762
BsiWI CGTACG 1 cut(s) 557
BslFI GGGAC 3 cut(s) 350, 627, 703
BslI CCNNNNNNNGG 5 cut(s) 129, 538, 986, 1000, 1028
BsmAI GTCTC 3 cut(s) 392, 602, 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 3 cut(s) 350, 627, 703
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 7 cut(s) 476, 531, 617, 747, 888, 963, 1141
Bso31I GGTCTC 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 621
Bsp120I GGGCCC 1 cut(s) 1139
Bsp1286I GDGCHC 3 cut(s) 422, 994, 1143
Bsp143I GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 2 cut(s) 684, 765
BspANI GGCC 7 cut(s) 476, 531, 617, 747, 888, 963, 1141
BspCNI CTCAG 3 cut(s) 214, 373, 952
BspLI GGNNCC 8 cut(s) 6, 92, 121, 148, 421, 682, 991, 1141
BspPI GGATC 3 cut(s) 617, 717, 1001
BspT104I TTCGAA 1 cut(s) 621
BspT107I GGYRCC 4 cut(s) 119, 146, 419, 989
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 459, 1059
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 7 cut(s) 52, 375, 571, 715, 964, 1033, 1124
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 5 cut(s) 115, 526, 532, 721, 760
BssMI GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
BssT1I CCWWGG 2 cut(s) 526, 532
Bst4CI ACNGT 6 cut(s) 244, 307, 341, 430, 740, 900
Bst6I CTCTTC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 4 cut(s) 82, 222, 360, 939
BstDSI CCRYGG 3 cut(s) 115, 526, 721
BstEII GGTNACC 1 cut(s) 238
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 3 cut(s) 148, 171, 965
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 7 cut(s) 102, 250, 409, 508, 612, 712, 1009
BstMAI GTCTC 3 cut(s) 392, 602, 804
BstMBI GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
BstMCI CGRYCG 1 cut(s) 748
BstPAI GACNNNNGTC 1 cut(s) 747
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 760
BstSLI GKGCMC 3 cut(s) 422, 994, 1143
BstV1I GCAGC 4 cut(s) 358, 540, 765, 838
BstX2I RGATCY 2 cut(s) 609, 709
BstXI CCANNNNNNTGG 2 cut(s) 533, 722
BstYI RGATCY 2 cut(s) 609, 709
BstZI CGGCCG 1 cut(s) 745
BsuI GTATCC 1 cut(s) 1029
BsuRI GGCC 7 cut(s) 476, 531, 617, 747, 888, 963, 1141
BtgI CCRYGG 3 cut(s) 115, 526, 721
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 3 cut(s) 148, 171, 965
BtsI GCAGTG 2 cut(s) 189, 969
BtsIMutI CAGTG 6 cut(s) 189, 382, 905, 947, 957, 969
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 6 cut(s) 725, 887, 962, 1085, 1139, 1140
CseI GACGC 2 cut(s) 777, 786
Csp6I GTAC 1 cut(s) 558
CspAI ACCGGT 1 cut(s) 490
CviAII CATG 5 cut(s) 227, 527, 550, 677, 1045
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 4 cut(s) 82, 222, 360, 939
DpnI GATC 7 cut(s) 101, 249, 408, 507, 611, 711, 1008
DpnII GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
DraIII CACNNNGTG 1 cut(s) 740
DriI GACNNNNNGTC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 745
EagI CGGCCG 1 cut(s) 745
Eam1104I CTCTTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 2 cut(s) 673, 780
EclXI CGGCCG 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 526, 532
Eco24I GRGCYC 1 cut(s) 1143
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 725, 1085
Eco52I CGGCCG 1 cut(s) 745
Eco57I CTGAAG 2 cut(s) 380, 645
Eco91I GGTNACC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 1140
EcoO65I GGTNACC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 526, 532
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 2 cut(s) 526, 532
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 5 cut(s) 230, 530, 553, 680, 1048
FaqI GGGAC 3 cut(s) 350, 627, 703
FatI CATG 5 cut(s) 226, 526, 549, 676, 1044
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 4 cut(s) 372, 554, 754, 827
FokI GGATG 3 cut(s) 155, 158, 952
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 4 cut(s) 372, 554, 754, 827
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 564
GluI GCNGC 4 cut(s) 372, 554, 754, 827
GsaI CCCAGC 1 cut(s) 700
GsuI CTGGAG 1 cut(s) 698
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 7 cut(s) 476, 531, 617, 747, 888, 963, 1141
HapII CCGG 3 cut(s) 200, 491, 762
HgaI GACGC 2 cut(s) 777, 786
HhaI GCGC 1 cut(s) 565
Hin1II CATG 5 cut(s) 230, 530, 553, 680, 1048
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 312, 467, 1115
HpaII CCGG 3 cut(s) 200, 491, 762
HphI GGTGA 2 cut(s) 1016, 1124
Hpy166II GTNNAC 3 cut(s) 576, 896, 947
Hpy188I TCNGA 4 cut(s) 95, 363, 499, 909
Hpy188III TCNNGA 3 cut(s) 155, 539, 1022
Hpy8I GTNNAC 3 cut(s) 576, 896, 947
Hpy99I CGWCG 4 cut(s) 518, 692, 753, 789
HpyAV CCTTC 2 cut(s) 18, 628
HpyCH4III ACNGT 6 cut(s) 244, 307, 341, 430, 740, 900
HpyCH4IV ACGT 1 cut(s) 1095
HpyCH4V TGCA 3 cut(s) 437, 605, 1034
HpyF3I CTNAG 4 cut(s) 82, 222, 360, 939
HpySE526I ACGT 1 cut(s) 1095
Hsp92II CATG 5 cut(s) 230, 530, 553, 680, 1048
HspAI GCGC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
LmnI GCTCC 2 cut(s) 10, 96
Lsp1109I GCAGC 4 cut(s) 358, 540, 765, 838
LweI GCATC 3 cut(s) 424, 490, 937
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 1095
MaeIII GTNAC 3 cut(s) 238, 740, 1126
MalI GATC 7 cut(s) 101, 249, 408, 507, 611, 711, 1008
MboI GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
MboII GAAGA 5 cut(s) 3, 9, 831, 834, 837
MflI RGATCY 2 cut(s) 609, 709
MhlI GDGCHC 3 cut(s) 422, 994, 1143
MluCI AATT 4 cut(s) 76, 255, 649, 865
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 3 cut(s) 118, 289, 469
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 901
MspI CCGG 3 cut(s) 200, 491, 762
MspR9I CCNGG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 264
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 526
NdeII GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
NlaIII CATG 5 cut(s) 230, 530, 553, 680, 1048
NlaIV GGNNCC 8 cut(s) 6, 92, 121, 148, 421, 682, 991, 1141
NmuCI GTSAC 2 cut(s) 740, 1126
NsiI ATGCAT 1 cut(s) 439
NspV TTCGAA 1 cut(s) 621
OliI CACNNNNGTG 1 cut(s) 901
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 312, 1115
Pfl23II CGTACG 1 cut(s) 557
PflMI CCANNNNNTGG 2 cut(s) 129, 1000
PinAI ACCGGT 1 cut(s) 490
PkrI GCNGC 4 cut(s) 373, 555, 755, 828
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PshAI GACNNNNGTC 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 1095
PspEI GGTNACC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 696
PspLI CGTACG 1 cut(s) 557
PspN4I GGNNCC 8 cut(s) 6, 92, 121, 148, 421, 682, 991, 1141
PspOMI GGGCCC 1 cut(s) 1139
PspPI GGNCC 6 cut(s) 725, 887, 962, 1085, 1139, 1140
PsuI RGATCY 2 cut(s) 609, 709
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 901
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 4 cut(s) 372, 554, 754, 827
Sau3AI GATC 7 cut(s) 99, 247, 406, 505, 609, 709, 1006
Sau96I GGNCC 6 cut(s) 725, 887, 962, 1085, 1139, 1140
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 762
SduI GDGCHC 3 cut(s) 422, 994, 1143
SfaNI GCATC 3 cut(s) 424, 490, 937
SfuI TTCGAA 1 cut(s) 621
SinI GGWCC 2 cut(s) 725, 1085
SmiMI CAYNNNNRTG 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 4 cut(s) 76, 255, 649, 865
SsiI CCGC 2 cut(s) 684, 765
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 760
StyI CCWWGG 2 cut(s) 526, 532
TaaI ACNGT 6 cut(s) 244, 307, 341, 430, 740, 900
TaiI ACGT 1 cut(s) 1098
TaqI TCGA 3 cut(s) 315, 621, 690
TasI AATT 4 cut(s) 76, 255, 649, 865
TfiI GAWTC 2 cut(s) 312, 1115
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 6 cut(s) 196, 382, 905, 947, 964, 976
TseFI GTSAC 2 cut(s) 740, 1126
TseI GCWGC 4 cut(s) 371, 553, 753, 826
Tsp45I GTSAC 2 cut(s) 740, 1126
TspDTI ATGAA 1 cut(s) 662
TspGWI ACGGA 3 cut(s) 104, 590, 722
TspRI CASTG 6 cut(s) 196, 382, 905, 947, 964, 976
Van91I CCANNNNNTGG 2 cut(s) 129, 1000
VpaK11BI GGWCC 2 cut(s) 725, 1085
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 2 cut(s) 785, 897
XmiI GTMKAC 1 cut(s) 575
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.