GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 27 - 182 | 1e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 621 |
| AcsI | RAATTY | 2 cut(s) | 113, 563 |
| AfaI | GTAC | 1 cut(s) | 649 |
| AgsI | TTSAA | 5 cut(s) | 158, 294, 333, 361, 581 |
| AjnI | CCWGG | 1 cut(s) | 474 |
| AleI | CACNNNNGTG | 1 cut(s) | 272 |
| AluBI | AGCT | 3 cut(s) | 222, 577, 608 |
| AluI | AGCT | 3 cut(s) | 222, 577, 608 |
| AoxI | GGCC | 1 cut(s) | 191 |
| ApaI | GGGCCC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 1 cut(s) | 608 |
| ApoI | RAATTY | 2 cut(s) | 113, 563 |
| AseI | ATTAAT | 1 cut(s) | 491 |
| AspA2I | CCTAGG | 1 cut(s) | 509 |
| AspLEI | GCGC | 1 cut(s) | 622 |
| AspS9I | GGNCC | 2 cut(s) | 191, 192 |
| AsuHPI | GGTGA | 1 cut(s) | 624 |
| AvrII | CCTAGG | 1 cut(s) | 509 |
| BaeGI | GKGCMC | 1 cut(s) | 195 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 595 |
| BccI | CCATC | 3 cut(s) | 116, 148, 158 |
| BciT130I | CCWGG | 1 cut(s) | 476 |
| BciVI | GTATCC | 1 cut(s) | 301 |
| BclI | TGATCA | 1 cut(s) | 237 |
| BfaI | CTAG | 1 cut(s) | 510 |
| BfmI | CTRYAG | 2 cut(s) | 453, 558 |
| BfuI | GTATCC | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 609 |
| BlnI | CCTAGG | 1 cut(s) | 509 |
| BlsI | GCNGC | 1 cut(s) | 610 |
| Bme1390I | CCNGG | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 2 cut(s) | 191, 192 |
| BmiI | GGNNCC | 1 cut(s) | 193 |
| BmrFI | CCNGG | 1 cut(s) | 476 |
| BmsI | GCATC | 3 cut(s) | 14, 69, 250 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 1 cut(s) | 509 |
| BseBI | CCWGG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 1 cut(s) | 509 |
| BseGI | GGATG | 2 cut(s) | 287, 538 |
| BseMII | CTCAG | 1 cut(s) | 330 |
| BseSI | GKGCMC | 1 cut(s) | 195 |
| BseXI | GCAGC | 1 cut(s) | 595 |
| BsgI | GTGCAG | 1 cut(s) | 7 |
| BshFI | GGCC | 1 cut(s) | 193 |
| BsnI | GGCC | 1 cut(s) | 193 |
| Bsp120I | GGGCCC | 1 cut(s) | 191 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp143I | GATC | 3 cut(s) | 237, 439, 570 |
| BspANI | GGCC | 1 cut(s) | 193 |
| BspCNI | CTCAG | 1 cut(s) | 331 |
| BspLI | GGNNCC | 1 cut(s) | 193 |
| BssECI | CCNNGG | 1 cut(s) | 509 |
| BssMI | GATC | 3 cut(s) | 237, 439, 570 |
| BssT1I | CCWWGG | 1 cut(s) | 509 |
| Bst2UI | CCWGG | 1 cut(s) | 476 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 1 cut(s) | 339 |
| BstF5I | GGATG | 2 cut(s) | 287, 538 |
| BstHHI | GCGC | 1 cut(s) | 622 |
| BstKTI | GATC | 3 cut(s) | 240, 442, 573 |
| BstMBI | GATC | 3 cut(s) | 237, 439, 570 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 617 |
| BstNI | CCWGG | 1 cut(s) | 476 |
| BstSCI | CCNGG | 1 cut(s) | 474 |
| BstSFI | CTRYAG | 2 cut(s) | 453, 558 |
| BstSLI | GKGCMC | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 595 |
| BsuI | GTATCC | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 193 |
| BtsCI | GGATG | 2 cut(s) | 287, 538 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| CfoI | GCGC | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 2 cut(s) | 191, 192 |
| Csp6I | GTAC | 1 cut(s) | 648 |
| CviAII | CATG | 2 cut(s) | 101, 546 |
| CviJI | RGCY | 7 cut(s) | 20, 193, 222, 449, 550, 577, 608 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 193, 222, 449, 550, 577, 608 |
| CviQI | GTAC | 1 cut(s) | 648 |
| DdeI | CTNAG | 1 cut(s) | 339 |
| DpnI | GATC | 3 cut(s) | 239, 441, 572 |
| DpnII | GATC | 3 cut(s) | 237, 439, 570 |
| DraI | TTTAAA | 1 cut(s) | 424 |
| Eco130I | CCWWGG | 1 cut(s) | 509 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoRII | CCWGG | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 1 cut(s) | 509 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| ErhI | CCWWGG | 1 cut(s) | 509 |
| FaeI | CATG | 2 cut(s) | 104, 549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 353, 385 |
| FatI | CATG | 2 cut(s) | 100, 545 |
| FauNDI | CATATG | 1 cut(s) | 662 |
| FbaI | TGATCA | 1 cut(s) | 237 |
| Fnu4HI | GCNGC | 1 cut(s) | 609 |
| FokI | GGATG | 2 cut(s) | 294, 545 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 1 cut(s) | 609 |
| FspBI | CTAG | 1 cut(s) | 510 |
| FspI | TGCGCA | 1 cut(s) | 621 |
| GlaI | GCGC | 1 cut(s) | 621 |
| GluI | GCNGC | 1 cut(s) | 609 |
| HaeIII | GGCC | 1 cut(s) | 193 |
| HhaI | GCGC | 1 cut(s) | 622 |
| Hin1II | CATG | 2 cut(s) | 104, 549 |
| Hin6I | GCGC | 1 cut(s) | 620 |
| HinP1I | GCGC | 1 cut(s) | 620 |
| HinfI | GANTC | 1 cut(s) | 42 |
| HphI | GGTGA | 1 cut(s) | 624 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 181, 340, 394, 472 |
| HpyAV | CCTTC | 1 cut(s) | 606 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 4 cut(s) | 24, 82, 263, 355 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 617 |
| HpyF3I | CTNAG | 1 cut(s) | 339 |
| Hsp92II | CATG | 2 cut(s) | 104, 549 |
| HspAI | GCGC | 1 cut(s) | 620 |
| Ksp22I | TGATCA | 1 cut(s) | 237 |
| Kzo9I | GATC | 3 cut(s) | 237, 439, 570 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 5 cut(s) | 34, 174, 200, 461, 488 |
| Lsp1109I | GCAGC | 1 cut(s) | 595 |
| LweI | GCATC | 3 cut(s) | 14, 69, 250 |
| MaeI | CTAG | 1 cut(s) | 510 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MalI | GATC | 3 cut(s) | 239, 441, 572 |
| MboI | GATC | 3 cut(s) | 237, 439, 570 |
| MboII | GAAGA | 3 cut(s) | 83, 168, 170 |
| MfeI | CAATTG | 2 cut(s) | 356, 443 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 9 cut(s) | 55, 113, 184, 228, 333, 356, 443, 492, 563 |
| MlyI | GAGTC | 1 cut(s) | 36 |
| MmeI | TCCRAC | 2 cut(s) | 189, 390 |
| MnlI | CCTC | 2 cut(s) | 89, 292 |
| MseI | TTAA | 4 cut(s) | 398, 423, 435, 491 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 1 cut(s) | 476 |
| MunI | CAATTG | 2 cut(s) | 356, 443 |
| MvaI | CCWGG | 1 cut(s) | 476 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 617 |
| NdeI | CATATG | 1 cut(s) | 662 |
| NdeII | GATC | 3 cut(s) | 237, 439, 570 |
| NlaIII | CATG | 2 cut(s) | 104, 549 |
| NlaIV | GGNNCC | 1 cut(s) | 193 |
| NsbI | TGCGCA | 1 cut(s) | 621 |
| OliI | CACNNNNGTG | 1 cut(s) | 272 |
| PkrI | GCNGC | 1 cut(s) | 610 |
| PleI | GAGTC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 36 |
| PshBI | ATTAAT | 1 cut(s) | 491 |
| Psp6I | CCWGG | 1 cut(s) | 474 |
| PspGI | CCWGG | 1 cut(s) | 474 |
| PspN4I | GGNNCC | 1 cut(s) | 193 |
| PspOMI | GGGCCC | 1 cut(s) | 191 |
| PspPI | GGNCC | 2 cut(s) | 191, 192 |
| RsaI | GTAC | 1 cut(s) | 649 |
| RsaNI | GTAC | 1 cut(s) | 648 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| SaqAI | TTAA | 4 cut(s) | 398, 423, 435, 491 |
| SatI | GCNGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 3 cut(s) | 237, 439, 570 |
| Sau96I | GGNCC | 2 cut(s) | 191, 192 |
| SchI | GAGTC | 1 cut(s) | 36 |
| ScrFI | CCNGG | 1 cut(s) | 476 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SetI | ASST | 8 cut(s) | 100, 224, 303, 545, 579, 598, 610, 637 |
| SfaNI | GCATC | 3 cut(s) | 14, 69, 250 |
| SfcI | CTRYAG | 2 cut(s) | 453, 558 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| SmlI | CTYRAG | 1 cut(s) | 314 |
| SmoI | CTYRAG | 1 cut(s) | 314 |
| Sse9I | AATT | 9 cut(s) | 55, 113, 184, 228, 333, 356, 443, 492, 563 |
| SspI | AATATT | 1 cut(s) | 489 |
| SspMI | CTAG | 1 cut(s) | 510 |
| StyD4I | CCNGG | 1 cut(s) | 474 |
| StyI | CCWWGG | 1 cut(s) | 509 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TaqI | TCGA | 3 cut(s) | 40, 94, 573 |
| TasI | AATT | 9 cut(s) | 55, 113, 184, 228, 333, 356, 443, 492, 563 |
| Tru1I | TTAA | 4 cut(s) | 398, 423, 435, 491 |
| Tru9I | TTAA | 4 cut(s) | 398, 423, 435, 491 |
| TscAI | CASTG | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 608 |
| TspDTI | ATGAA | 4 cut(s) | 63, 497, 549, 588 |
| TspGWI | ACGGA | 2 cut(s) | 25, 371 |
| TspRI | CASTG | 1 cut(s) | 31 |
| VspI | ATTAAT | 1 cut(s) | 491 |
| XapI | RAATTY | 2 cut(s) | 113, 563 |
| XmaJI | CCTAGG | 1 cut(s) | 509 |
| XspI | CTAG | 1 cut(s) | 510 |