gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 228 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 500 |
| AciI | CCGC | 2 cut(s) | 326, 421 |
| AclWI | GGATC | 3 cut(s) | 415, 438, 451 |
| AcuI | CTGAAG | 1 cut(s) | 389 |
| AfaI | GTAC | 2 cut(s) | 151, 211 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 500 |
| AgsI | TTSAA | 1 cut(s) | 349 |
| AluBI | AGCT | 5 cut(s) | 34, 303, 314, 367, 483 |
| AluI | AGCT | 5 cut(s) | 34, 303, 314, 367, 483 |
| AlwI | GGATC | 3 cut(s) | 415, 438, 451 |
| AoxI | GGCC | 3 cut(s) | 277, 418, 559 |
| AspS9I | GGNCC | 3 cut(s) | 278, 455, 560 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 231 |
| BamHI | GGATCC | 1 cut(s) | 443 |
| BanI | GGYRCC | 1 cut(s) | 228 |
| BauI | CACGAG | 1 cut(s) | 315 |
| BccI | CCATC | 1 cut(s) | 179 |
| BceAI | ACGGC | 1 cut(s) | 456 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BfmI | CTRYAG | 1 cut(s) | 466 |
| BisI | GCNGC | 1 cut(s) | 421 |
| BlsI | GCNGC | 1 cut(s) | 422 |
| Bme1390I | CCNGG | 1 cut(s) | 233 |
| Bme18I | GGWCC | 1 cut(s) | 455 |
| BmgT120I | GGNCC | 3 cut(s) | 278, 455, 560 |
| BmiI | GGNNCC | 4 cut(s) | 230, 445, 457, 478 |
| BmrFI | CCNGG | 1 cut(s) | 233 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| BsaBI | GATNNNNATC | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 500 |
| Bse3DI | GCAATG | 1 cut(s) | 352 |
| Bse8I | GATNNNNATC | 1 cut(s) | 257 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 1 cut(s) | 395 |
| BseJI | GATNNNNATC | 1 cut(s) | 257 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BseMI | GCAATG | 1 cut(s) | 352 |
| BseMII | CTCAG | 1 cut(s) | 500 |
| BseRI | GAGGAG | 3 cut(s) | 10, 134, 525 |
| BseSI | GKGCMC | 1 cut(s) | 231 |
| BshFI | GGCC | 3 cut(s) | 279, 420, 561 |
| BshNI | GGYRCC | 1 cut(s) | 228 |
| BsiSI | CCGG | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BsmFI | GGGAC | 1 cut(s) | 441 |
| BsnI | GGCC | 3 cut(s) | 279, 420, 561 |
| Bsp1286I | GDGCHC | 1 cut(s) | 231 |
| Bsp143I | GATC | 3 cut(s) | 163, 407, 443 |
| BspACI | CCGC | 2 cut(s) | 326, 421 |
| BspANI | GGCC | 3 cut(s) | 279, 420, 561 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspLI | GGNNCC | 4 cut(s) | 230, 445, 457, 478 |
| BspPI | GGATC | 3 cut(s) | 415, 438, 451 |
| BspT107I | GGYRCC | 1 cut(s) | 228 |
| BsrDI | GCAATG | 1 cut(s) | 352 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 3 cut(s) | 163, 407, 443 |
| BssSI | CACGAG | 1 cut(s) | 315 |
| Bst2BI | CACGAG | 1 cut(s) | 315 |
| BstDEI | CTNAG | 3 cut(s) | 486, 515, 644 |
| BstDSI | CCRYGG | 1 cut(s) | 472 |
| BstF5I | GGATG | 1 cut(s) | 395 |
| BstKTI | GATC | 3 cut(s) | 166, 410, 446 |
| BstMBI | GATC | 3 cut(s) | 163, 407, 443 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 349, 573 |
| BstSCI | CCNGG | 1 cut(s) | 231 |
| BstSFI | CTRYAG | 1 cut(s) | 466 |
| BstSLI | GKGCMC | 1 cut(s) | 231 |
| BstX2I | RGATCY | 2 cut(s) | 407, 443 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 134 |
| BstYI | RGATCY | 2 cut(s) | 407, 443 |
| BsuRI | GGCC | 3 cut(s) | 279, 420, 561 |
| BtgI | CCRYGG | 1 cut(s) | 472 |
| BtsCI | GGATG | 1 cut(s) | 395 |
| Cfr13I | GGNCC | 3 cut(s) | 278, 455, 560 |
| Csp6I | GTAC | 2 cut(s) | 150, 210 |
| CviAII | CATG | 4 cut(s) | 51, 500, 564, 622 |
| CviQI | GTAC | 2 cut(s) | 150, 210 |
| DdeI | CTNAG | 3 cut(s) | 486, 515, 644 |
| DpnI | GATC | 3 cut(s) | 165, 409, 445 |
| DpnII | GATC | 3 cut(s) | 163, 407, 443 |
| Eco47I | GGWCC | 1 cut(s) | 455 |
| Eco57I | CTGAAG | 1 cut(s) | 389 |
| FaeI | CATG | 4 cut(s) | 54, 503, 567, 625 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 341, 373 |
| FaqI | GGGAC | 1 cut(s) | 441 |
| FatI | CATG | 4 cut(s) | 50, 499, 563, 621 |
| Fnu4HI | GCNGC | 1 cut(s) | 421 |
| FokI | GGATG | 1 cut(s) | 402 |
| Fsp4HI | GCNGC | 1 cut(s) | 421 |
| FspBI | CTAG | 1 cut(s) | 156 |
| GluI | GCNGC | 1 cut(s) | 421 |
| HaeIII | GGCC | 3 cut(s) | 279, 420, 561 |
| HapII | CCGG | 1 cut(s) | 233 |
| Hin1II | CATG | 4 cut(s) | 54, 503, 567, 625 |
| HincII | GTYRAC | 1 cut(s) | 63 |
| HindII | GTYRAC | 1 cut(s) | 63 |
| HinfI | GANTC | 4 cut(s) | 109, 242, 551, 615 |
| HpaII | CCGG | 1 cut(s) | 233 |
| Hpy166II | GTNNAC | 2 cut(s) | 63, 212 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 178, 201, 247 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 317, 346 |
| Hpy8I | GTNNAC | 2 cut(s) | 63, 212 |
| HpyAV | CCTTC | 3 cut(s) | 92, 549, 626 |
| HpyCH4IV | ACGT | 2 cut(s) | 505, 580 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 349, 573 |
| HpyF3I | CTNAG | 3 cut(s) | 486, 515, 644 |
| HpySE526I | ACGT | 2 cut(s) | 505, 580 |
| Hsp92II | CATG | 4 cut(s) | 54, 503, 567, 625 |
| Kzo9I | GATC | 3 cut(s) | 163, 407, 443 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| LpnPI | CCDG | 6 cut(s) | 24, 39, 192, 246, 438, 493 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MaeII | ACGT | 2 cut(s) | 505, 580 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MalI | GATC | 3 cut(s) | 165, 409, 445 |
| MboI | GATC | 3 cut(s) | 163, 407, 443 |
| MboII | GAAGA | 1 cut(s) | 382 |
| MfeI | CAATTG | 2 cut(s) | 115, 597 |
| MflI | RGATCY | 2 cut(s) | 407, 443 |
| MhlI | GDGCHC | 1 cut(s) | 231 |
| MluCI | AATT | 3 cut(s) | 115, 329, 597 |
| MlyI | GAGTC | 3 cut(s) | 236, 545, 609 |
| MmeI | TCCRAC | 2 cut(s) | 151, 270 |
| MnlI | CCTC | 8 cut(s) | 31, 96, 152, 155, 291, 410, 469, 546 |
| MseI | TTAA | 1 cut(s) | 195 |
| MspI | CCGG | 1 cut(s) | 233 |
| MspR9I | CCNGG | 1 cut(s) | 233 |
| MunI | CAATTG | 2 cut(s) | 115, 597 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 349, 573 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NdeII | GATC | 3 cut(s) | 163, 407, 443 |
| NlaIII | CATG | 4 cut(s) | 54, 503, 567, 625 |
| NlaIV | GGNNCC | 4 cut(s) | 230, 445, 457, 478 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 500 |
| PkrI | GCNGC | 1 cut(s) | 422 |
| PleI | GAGTC | 3 cut(s) | 236, 545, 609 |
| PpsI | GAGTC | 3 cut(s) | 236, 545, 609 |
| PspN4I | GGNNCC | 4 cut(s) | 230, 445, 457, 478 |
| PspPI | GGNCC | 3 cut(s) | 278, 455, 560 |
| PsuI | RGATCY | 2 cut(s) | 407, 443 |
| RsaI | GTAC | 2 cut(s) | 151, 211 |
| RsaNI | GTAC | 2 cut(s) | 150, 210 |
| SaqAI | TTAA | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 421 |
| Sau3AI | GATC | 3 cut(s) | 163, 407, 443 |
| Sau96I | GGNCC | 3 cut(s) | 278, 455, 560 |
| SchI | GAGTC | 3 cut(s) | 236, 545, 609 |
| ScrFI | CCNGG | 1 cut(s) | 233 |
| SduI | GDGCHC | 1 cut(s) | 231 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| SfcI | CTRYAG | 1 cut(s) | 466 |
| SinI | GGWCC | 1 cut(s) | 455 |
| Sse9I | AATT | 3 cut(s) | 115, 329, 597 |
| SsiI | CCGC | 2 cut(s) | 326, 421 |
| SspMI | CTAG | 1 cut(s) | 156 |
| StyD4I | CCNGG | 1 cut(s) | 231 |
| TaiI | ACGT | 2 cut(s) | 508, 583 |
| TaqI | TCGA | 1 cut(s) | 637 |
| TasI | AATT | 3 cut(s) | 115, 329, 597 |
| TauI | GCSGC | 1 cut(s) | 423 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 1 cut(s) | 195 |
| Tru9I | TTAA | 1 cut(s) | 195 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 2 cut(s) | 281, 645 |
| TspGWI | ACGGA | 2 cut(s) | 80, 137 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 455 |
| XspI | CTAG | 1 cut(s) | 156 |