gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| Acc65I | GGTACC | 1 cut(s) | 542 |
| AccB1I | GGYRCC | 3 cut(s) | 542, 605, 635 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 524, 602 |
| AclWI | GGATC | 1 cut(s) | 183 |
| AcoI | YGGCCR | 1 cut(s) | 696 |
| AcsI | RAATTY | 2 cut(s) | 216, 687 |
| AfaI | GTAC | 3 cut(s) | 14, 427, 544 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 452, 524, 602 |
| AgsI | TTSAA | 2 cut(s) | 368, 692 |
| AjnI | CCWGG | 1 cut(s) | 421 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 434, 466 |
| AluBI | AGCT | 1 cut(s) | 118 |
| AluI | AGCT | 1 cut(s) | 118 |
| AlwI | GGATC | 1 cut(s) | 183 |
| AoxI | GGCC | 2 cut(s) | 627, 696 |
| ApoI | RAATTY | 2 cut(s) | 216, 687 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 756, 788 |
| Asp718I | GGTACC | 1 cut(s) | 542 |
| AspS9I | GGNCC | 2 cut(s) | 410, 627 |
| AsuHPI | GGTGA | 5 cut(s) | 89, 193, 312, 386, 407 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| BalI | TGGCCA | 1 cut(s) | 698 |
| BanI | GGYRCC | 3 cut(s) | 542, 605, 635 |
| BbsI | GAAGAC | 2 cut(s) | 240, 612 |
| BccI | CCATC | 3 cut(s) | 274, 649, 741 |
| BceAI | ACGGC | 3 cut(s) | 696, 771, 782 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 695, 729 |
| BciT130I | CCWGG | 1 cut(s) | 423 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BfaI | CTAG | 3 cut(s) | 72, 212, 759 |
| BlpI | GCTNAGC | 1 cut(s) | 303 |
| Bme1390I | CCNGG | 1 cut(s) | 423 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 2 cut(s) | 410, 627 |
| BmiI | GGNNCC | 4 cut(s) | 544, 607, 628, 637 |
| BmrFI | CCNGG | 1 cut(s) | 423 |
| BmsI | GCATC | 1 cut(s) | 346 |
| BpiI | GAAGAC | 2 cut(s) | 240, 612 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 303 |
| BpuEI | CTTGAG | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 1 cut(s) | 699 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 452, 524, 602 |
| BseBI | CCWGG | 1 cut(s) | 423 |
| BseDI | CCNNGG | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 452, 524, 602 |
| BseMII | CTCAG | 2 cut(s) | 518, 677 |
| BseYI | CCCAGC | 1 cut(s) | 595 |
| BshFI | GGCC | 2 cut(s) | 629, 698 |
| BshNI | GGYRCC | 3 cut(s) | 542, 605, 635 |
| BslFI | GGGAC | 1 cut(s) | 230 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 452, 524, 602 |
| BsmFI | GGGAC | 1 cut(s) | 230 |
| BsnI | GGCC | 2 cut(s) | 629, 698 |
| Bsp143I | GATC | 2 cut(s) | 175, 196 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 303 |
| BspANI | GGCC | 2 cut(s) | 629, 698 |
| BspCNI | CTCAG | 2 cut(s) | 517, 676 |
| BspLI | GGNNCC | 4 cut(s) | 544, 607, 628, 637 |
| BspPI | GGATC | 1 cut(s) | 183 |
| BspT107I | GGYRCC | 3 cut(s) | 542, 605, 635 |
| BssECI | CCNNGG | 1 cut(s) | 699 |
| BssMI | GATC | 2 cut(s) | 175, 196 |
| Bst2UI | CCWGG | 1 cut(s) | 423 |
| Bst4CI | ACNGT | 1 cut(s) | 703 |
| Bst6I | CTCTTC | 1 cut(s) | 363 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 605 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 3 cut(s) | 303, 504, 663 |
| BstDSI | CCRYGG | 1 cut(s) | 699 |
| BstKTI | GATC | 2 cut(s) | 178, 199 |
| BstMBI | GATC | 2 cut(s) | 175, 196 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 605 |
| BstNI | CCWGG | 1 cut(s) | 423 |
| BstSCI | CCNGG | 1 cut(s) | 421 |
| BstV2I | GAAGAC | 2 cut(s) | 240, 612 |
| BsuRI | GGCC | 2 cut(s) | 629, 698 |
| BtgI | CCRYGG | 1 cut(s) | 699 |
| BtgZI | GCGATG | 1 cut(s) | 719 |
| BtsIMutI | CAGTG | 1 cut(s) | 655 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| Cfr13I | GGNCC | 2 cut(s) | 410, 627 |
| CsiI | ACCWGGT | 1 cut(s) | 421 |
| Csp6I | GTAC | 3 cut(s) | 13, 426, 543 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 538, 573 |
| CviAII | CATG | 3 cut(s) | 99, 283, 499 |
| CviQI | GTAC | 3 cut(s) | 13, 426, 543 |
| DdeI | CTNAG | 3 cut(s) | 303, 504, 663 |
| DpnI | GATC | 2 cut(s) | 177, 198 |
| DpnII | GATC | 2 cut(s) | 175, 196 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| EaeI | YGGCCR | 1 cut(s) | 696 |
| Eam1104I | CTCTTC | 1 cut(s) | 363 |
| EarI | CTCTTC | 1 cut(s) | 363 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 410 |
| EcoRI | GAATTC | 2 cut(s) | 216, 687 |
| EcoRII | CCWGG | 1 cut(s) | 421 |
| EcoT22I | ATGCAT | 1 cut(s) | 577 |
| FaeI | CATG | 3 cut(s) | 102, 286, 502 |
| FaqI | GGGAC | 1 cut(s) | 230 |
| FatI | CATG | 3 cut(s) | 98, 282, 498 |
| FauNDI | CATATG | 2 cut(s) | 222, 229 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| FspBI | CTAG | 3 cut(s) | 72, 212, 759 |
| GsaI | CCCAGC | 1 cut(s) | 599 |
| HaeIII | GGCC | 2 cut(s) | 629, 698 |
| Hin1II | CATG | 3 cut(s) | 102, 286, 502 |
| HinfI | GANTC | 2 cut(s) | 155, 502 |
| HphI | GGTGA | 5 cut(s) | 89, 193, 312, 386, 407 |
| Hpy188I | TCNGA | 4 cut(s) | 154, 271, 355, 441 |
| Hpy188III | TCNNGA | 1 cut(s) | 121 |
| Hpy99I | CGWCG | 3 cut(s) | 717, 757, 768 |
| HpyAV | CCTTC | 1 cut(s) | 401 |
| HpyCH4III | ACNGT | 1 cut(s) | 703 |
| HpyCH4V | TGCA | 4 cut(s) | 458, 575, 674, 706 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 605 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 504, 663 |
| Hsp92II | CATG | 3 cut(s) | 102, 286, 502 |
| KpnI | GGTACC | 1 cut(s) | 546 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 2 cut(s) | 175, 196 |
| LmnI | GCTCC | 2 cut(s) | 400, 528 |
| LpnPI | CCDG | 5 cut(s) | 408, 435, 609, 609, 650 |
| LweI | GCATC | 1 cut(s) | 346 |
| MabI | ACCWGGT | 1 cut(s) | 421 |
| MaeI | CTAG | 3 cut(s) | 72, 212, 759 |
| MaeIII | GTNAC | 1 cut(s) | 374 |
| MalI | GATC | 2 cut(s) | 177, 198 |
| MboI | GATC | 2 cut(s) | 175, 196 |
| MboII | GAAGA | 6 cut(s) | 196, 245, 245, 380, 381, 612 |
| MlsI | TGGCCA | 1 cut(s) | 698 |
| MluCI | AATT | 9 cut(s) | 127, 216, 240, 294, 315, 329, 687, 727, 770 |
| MluNI | TGGCCA | 1 cut(s) | 698 |
| MlyI | GAGTC | 1 cut(s) | 496 |
| MnlI | CCTC | 4 cut(s) | 75, 364, 423, 556 |
| Mox20I | TGGCCA | 1 cut(s) | 698 |
| Mph1103I | ATGCAT | 1 cut(s) | 577 |
| MscI | TGGCCA | 1 cut(s) | 698 |
| MseI | TTAA | 3 cut(s) | 105, 332, 435 |
| Msp20I | TGGCCA | 1 cut(s) | 698 |
| MspR9I | CCNGG | 1 cut(s) | 423 |
| MvaI | CCWGG | 1 cut(s) | 423 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 605 |
| NdeI | CATATG | 2 cut(s) | 222, 229 |
| NdeII | GATC | 2 cut(s) | 175, 196 |
| NlaIII | CATG | 3 cut(s) | 102, 286, 502 |
| NlaIV | GGNNCC | 4 cut(s) | 544, 607, 628, 637 |
| NmuCI | GTSAC | 1 cut(s) | 374 |
| NsiI | ATGCAT | 1 cut(s) | 577 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PflFI | GACNNNGTC | 1 cut(s) | 505 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 524, 602 |
| PleI | GAGTC | 1 cut(s) | 496 |
| PpsI | GAGTC | 1 cut(s) | 496 |
| PpuMI | RGGWCCY | 1 cut(s) | 410 |
| Psp5II | RGGWCCY | 1 cut(s) | 410 |
| Psp6I | CCWGG | 1 cut(s) | 421 |
| PspFI | CCCAGC | 1 cut(s) | 595 |
| PspGI | CCWGG | 1 cut(s) | 421 |
| PspN4I | GGNNCC | 4 cut(s) | 544, 607, 628, 637 |
| PspPI | GGNCC | 2 cut(s) | 410, 627 |
| PspPPI | RGGWCCY | 1 cut(s) | 410 |
| PsyI | GACNNNGTC | 1 cut(s) | 505 |
| RsaI | GTAC | 3 cut(s) | 14, 427, 544 |
| RsaNI | GTAC | 3 cut(s) | 13, 426, 543 |
| SaqAI | TTAA | 3 cut(s) | 105, 332, 435 |
| Sau3AI | GATC | 2 cut(s) | 175, 196 |
| Sau96I | GGNCC | 2 cut(s) | 410, 627 |
| SchI | GAGTC | 1 cut(s) | 496 |
| ScrFI | CCNGG | 1 cut(s) | 423 |
| SetI | ASST | 9 cut(s) | 18, 86, 120, 151, 338, 412, 427, 548, 669 |
| SexAI | ACCWGGT | 1 cut(s) | 421 |
| SfaNI | GCATC | 1 cut(s) | 346 |
| SinI | GGWCC | 1 cut(s) | 410 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 9 cut(s) | 127, 216, 240, 294, 315, 329, 687, 727, 770 |
| SspMI | CTAG | 3 cut(s) | 72, 212, 759 |
| StyD4I | CCNGG | 1 cut(s) | 421 |
| TaaI | ACNGT | 1 cut(s) | 703 |
| TasI | AATT | 9 cut(s) | 127, 216, 240, 294, 315, 329, 687, 727, 770 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 3 cut(s) | 105, 332, 435 |
| Tru9I | TTAA | 3 cut(s) | 105, 332, 435 |
| TscAI | CASTG | 1 cut(s) | 655 |
| TseFI | GTSAC | 1 cut(s) | 374 |
| Tsp45I | GTSAC | 1 cut(s) | 374 |
| TspDTI | ATGAA | 4 cut(s) | 87, 209, 246, 299 |
| TspRI | CASTG | 1 cut(s) | 655 |
| Tth111I | GACNNNGTC | 1 cut(s) | 505 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 524, 602 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| XapI | RAATTY | 2 cut(s) | 216, 687 |
| XspI | CTAG | 3 cut(s) | 72, 212, 759 |
| Zsp2I | ATGCAT | 1 cut(s) | 577 |