ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 17 - 166 | 2.4e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 527 |
| AccII | CGCG | 1 cut(s) | 572 |
| AciI | CCGC | 3 cut(s) | 38, 359, 430 |
| AclI | AACGTT | 1 cut(s) | 107 |
| AclWI | GGATC | 3 cut(s) | 98, 128, 255 |
| AcoI | YGGCCR | 1 cut(s) | 455 |
| AcsI | RAATTY | 3 cut(s) | 164, 386, 418 |
| AcuI | CTGAAG | 1 cut(s) | 72 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 358 |
| AgsI | TTSAA | 1 cut(s) | 129 |
| AluBI | AGCT | 4 cut(s) | 77, 182, 241, 332 |
| AluI | AGCT | 4 cut(s) | 77, 182, 241, 332 |
| Alw21I | GWGCWC | 2 cut(s) | 184, 243 |
| Alw26I | GTCTC | 1 cut(s) | 236 |
| AlwI | GGATC | 3 cut(s) | 98, 128, 255 |
| Ama87I | CYCGRG | 1 cut(s) | 471 |
| AoxI | GGCC | 2 cut(s) | 349, 455 |
| ApeKI | GCWGC | 1 cut(s) | 599 |
| ApoI | RAATTY | 3 cut(s) | 164, 386, 418 |
| AvaI | CYCGRG | 1 cut(s) | 471 |
| BanII | GRGCYC | 2 cut(s) | 184, 243 |
| Bbv12I | GWGCWC | 2 cut(s) | 184, 243 |
| BbvI | GCAGC | 1 cut(s) | 586 |
| BccI | CCATC | 2 cut(s) | 341, 452 |
| BciVI | GTATCC | 1 cut(s) | 146 |
| BcoDI | GTCTC | 1 cut(s) | 236 |
| BfaI | CTAG | 1 cut(s) | 323 |
| BfuI | GTATCC | 1 cut(s) | 146 |
| BglII | AGATCT | 1 cut(s) | 7 |
| BisI | GCNGC | 2 cut(s) | 360, 600 |
| BlsI | GCNGC | 2 cut(s) | 361, 601 |
| BmeT110I | CYCGRG | 1 cut(s) | 471 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BpuEI | CTTGAG | 2 cut(s) | 227, 257 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 358 |
| Bse1I | ACTGG | 1 cut(s) | 464 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BseMII | CTCAG | 1 cut(s) | 603 |
| BseNI | ACTGG | 1 cut(s) | 464 |
| BseXI | GCAGC | 1 cut(s) | 586 |
| Bsh1236I | CGCG | 1 cut(s) | 572 |
| BshFI | GGCC | 2 cut(s) | 351, 457 |
| BsiHKAI | GWGCWC | 2 cut(s) | 184, 243 |
| BsiHKCI | CYCGRG | 1 cut(s) | 471 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BsmAI | GTCTC | 1 cut(s) | 236 |
| BsmBI | CGTCTC | 1 cut(s) | 236 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 2 cut(s) | 351, 457 |
| BsoBI | CYCGRG | 1 cut(s) | 471 |
| Bsp1286I | GDGCHC | 2 cut(s) | 184, 243 |
| Bsp143I | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| BspACI | CCGC | 3 cut(s) | 38, 359, 430 |
| BspANI | GGCC | 2 cut(s) | 351, 457 |
| BspCNI | CTCAG | 1 cut(s) | 602 |
| BspFNI | CGCG | 1 cut(s) | 572 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BspPI | GGATC | 3 cut(s) | 98, 128, 255 |
| BsrI | ACTGG | 1 cut(s) | 464 |
| BssMI | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 279 |
| Bst6I | CTCTTC | 2 cut(s) | 16, 48 |
| BstDEI | CTNAG | 2 cut(s) | 497, 589 |
| BstFNI | CGCG | 1 cut(s) | 572 |
| BstKTI | GATC | 5 cut(s) | 10, 93, 123, 250, 564 |
| BstMAI | GTCTC | 1 cut(s) | 236 |
| BstMBI | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 218 |
| BstUI | CGCG | 1 cut(s) | 572 |
| BstV1I | GCAGC | 1 cut(s) | 586 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BsuI | GTATCC | 1 cut(s) | 146 |
| BsuRI | GGCC | 2 cut(s) | 351, 457 |
| BtsI | GCAGTG | 1 cut(s) | 35 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 565 |
| DdeI | CTNAG | 2 cut(s) | 497, 589 |
| DpnI | GATC | 5 cut(s) | 9, 92, 122, 249, 563 |
| DpnII | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| EaeI | YGGCCR | 1 cut(s) | 455 |
| Eam1104I | CTCTTC | 2 cut(s) | 16, 48 |
| EarI | CTCTTC | 2 cut(s) | 16, 48 |
| Ecl136II | GAGCTC | 2 cut(s) | 182, 241 |
| Eco24I | GRGCYC | 2 cut(s) | 184, 243 |
| Eco53kI | GAGCTC | 2 cut(s) | 182, 241 |
| Eco57I | CTGAAG | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 1 cut(s) | 471 |
| EcoICRI | GAGCTC | 2 cut(s) | 182, 241 |
| EcoRI | GAATTC | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 2 cut(s) | 184, 243 |
| Esp3I | CGTCTC | 1 cut(s) | 236 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FauNDI | CATATG | 2 cut(s) | 269, 424 |
| Fnu4HI | GCNGC | 2 cut(s) | 360, 600 |
| FriOI | GRGCYC | 2 cut(s) | 184, 243 |
| Fsp4HI | GCNGC | 2 cut(s) | 360, 600 |
| FspBI | CTAG | 1 cut(s) | 323 |
| GluI | GCNGC | 2 cut(s) | 360, 600 |
| HaeIII | GGCC | 2 cut(s) | 351, 457 |
| HgaI | GACGC | 1 cut(s) | 565 |
| HinfI | GANTC | 2 cut(s) | 380, 532 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 176 |
| Hpy188I | TCNGA | 4 cut(s) | 283, 385, 449, 592 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 473 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 176 |
| Hpy99I | CGWCG | 1 cut(s) | 297 |
| HpyAV | CCTTC | 3 cut(s) | 11, 307, 310 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 279 |
| HpyCH4IV | ACGT | 3 cut(s) | 107, 295, 399 |
| HpyCH4V | TGCA | 3 cut(s) | 193, 221, 484 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 218 |
| HpyF3I | CTNAG | 2 cut(s) | 497, 589 |
| HpySE526I | ACGT | 3 cut(s) | 107, 295, 399 |
| Kzo9I | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| LpnPI | CCDG | 6 cut(s) | 79, 87, 348, 384, 471, 477 |
| Lsp1109I | GCAGC | 1 cut(s) | 586 |
| MaeI | CTAG | 1 cut(s) | 323 |
| MaeII | ACGT | 3 cut(s) | 107, 295, 399 |
| MaeIII | GTNAC | 2 cut(s) | 108, 466 |
| MalI | GATC | 5 cut(s) | 9, 92, 122, 249, 563 |
| MboI | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| MboII | GAAGA | 3 cut(s) | 33, 65, 488 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MhlI | GDGCHC | 2 cut(s) | 184, 243 |
| MluCI | AATT | 8 cut(s) | 41, 85, 124, 164, 386, 418, 479, 543 |
| MnlI | CCTC | 3 cut(s) | 90, 362, 451 |
| MseI | TTAA | 1 cut(s) | 604 |
| MvnI | CGCG | 1 cut(s) | 572 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 218 |
| NdeI | CATATG | 2 cut(s) | 269, 424 |
| NdeII | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmeAIII | GCCGAG | 1 cut(s) | 433 |
| PaeR7I | CTCGAG | 1 cut(s) | 471 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 563 |
| PfeI | GAWTC | 2 cut(s) | 380, 532 |
| PkrI | GCNGC | 2 cut(s) | 361, 601 |
| PsiI | TTATAA | 1 cut(s) | 527 |
| Psp124BI | GAGCTC | 2 cut(s) | 184, 243 |
| Psp1406I | AACGTT | 1 cut(s) | 107 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| SacI | GAGCTC | 2 cut(s) | 184, 243 |
| SaqAI | TTAA | 1 cut(s) | 604 |
| SatI | GCNGC | 2 cut(s) | 360, 600 |
| Sau3AI | GATC | 5 cut(s) | 7, 90, 120, 247, 561 |
| SduI | GDGCHC | 2 cut(s) | 184, 243 |
| SetI | ASST | 9 cut(s) | 79, 110, 184, 243, 298, 324, 334, 402, 514 |
| Sfr274I | CTCGAG | 1 cut(s) | 471 |
| SlaI | CTCGAG | 1 cut(s) | 471 |
| SmlI | CTYRAG | 3 cut(s) | 236, 242, 471 |
| SmoI | CTYRAG | 3 cut(s) | 236, 242, 471 |
| Sse9I | AATT | 8 cut(s) | 41, 85, 124, 164, 386, 418, 479, 543 |
| SsiI | CCGC | 3 cut(s) | 38, 359, 430 |
| SspMI | CTAG | 1 cut(s) | 323 |
| SstI | GAGCTC | 2 cut(s) | 184, 243 |
| TaaI | ACNGT | 2 cut(s) | 160, 279 |
| TaiI | ACGT | 3 cut(s) | 110, 298, 402 |
| TaqI | TCGA | 2 cut(s) | 354, 472 |
| TasI | AATT | 8 cut(s) | 41, 85, 124, 164, 386, 418, 479, 543 |
| TauI | GCSGC | 1 cut(s) | 362 |
| TfiI | GAWTC | 2 cut(s) | 380, 532 |
| Tru1I | TTAA | 1 cut(s) | 604 |
| Tru9I | TTAA | 1 cut(s) | 604 |
| TscAI | CASTG | 1 cut(s) | 35 |
| TseI | GCWGC | 1 cut(s) | 599 |
| TspDTI | ATGAA | 3 cut(s) | 411, 531, 545 |
| TspRI | CASTG | 1 cut(s) | 35 |
| XapI | RAATTY | 3 cut(s) | 164, 386, 418 |
| XhoI | CTCGAG | 1 cut(s) | 471 |
| XspI | CTAG | 1 cut(s) | 323 |