gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 4 - 71 | 3.5e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 264 |
| AcsI | RAATTY | 4 cut(s) | 152, 277, 289, 427 |
| AgsI | TTSAA | 1 cut(s) | 464 |
| Alw26I | GTCTC | 1 cut(s) | 185 |
| AlwI | GGATC | 1 cut(s) | 264 |
| ApoI | RAATTY | 4 cut(s) | 152, 277, 289, 427 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BclI | TGATCA | 2 cut(s) | 21, 433 |
| BcoDI | GTCTC | 1 cut(s) | 185 |
| BfaI | CTAG | 2 cut(s) | 282, 450 |
| BglII | AGATCT | 1 cut(s) | 198 |
| BsaI | GGTCTC | 1 cut(s) | 185 |
| Bse1I | ACTGG | 1 cut(s) | 58 |
| Bse3DI | GCAATG | 1 cut(s) | 154 |
| BseMI | GCAATG | 1 cut(s) | 154 |
| BseNI | ACTGG | 1 cut(s) | 58 |
| BsmAI | GTCTC | 1 cut(s) | 185 |
| Bso31I | GGTCTC | 1 cut(s) | 185 |
| Bsp143I | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BspTNI | GGTCTC | 1 cut(s) | 185 |
| BsrDI | GCAATG | 1 cut(s) | 154 |
| BsrI | ACTGG | 1 cut(s) | 58 |
| BssMI | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| BstKTI | GATC | 5 cut(s) | 24, 79, 201, 272, 436 |
| BstMAI | GTCTC | 1 cut(s) | 185 |
| BstMBI | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 292, 327 |
| CviAII | CATG | 2 cut(s) | 176, 254 |
| CviJI | RGCY | 1 cut(s) | 399 |
| CviKI_1 | RGCY | 1 cut(s) | 399 |
| DpnI | GATC | 5 cut(s) | 23, 78, 200, 271, 435 |
| DpnII | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| Eco31I | GGTCTC | 1 cut(s) | 185 |
| Eco32I | GATATC | 1 cut(s) | 31 |
| EcoRV | GATATC | 1 cut(s) | 31 |
| FaeI | CATG | 2 cut(s) | 179, 257 |
| FaiI | YATR | 9 cut(s) | 88, 95, 117, 177, 255, 339, 475, 479, 481 |
| FatI | CATG | 2 cut(s) | 175, 253 |
| FbaI | TGATCA | 2 cut(s) | 21, 433 |
| FspBI | CTAG | 2 cut(s) | 282, 450 |
| Hin1II | CATG | 2 cut(s) | 179, 257 |
| HinfI | GANTC | 2 cut(s) | 119, 346 |
| Hpy166II | GTNNAC | 1 cut(s) | 59 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 76, 224, 345 |
| Hpy188III | TCNNGA | 1 cut(s) | 420 |
| Hpy8I | GTNNAC | 1 cut(s) | 59 |
| HpyAV | CCTTC | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 2 cut(s) | 147, 216 |
| Hsp92II | CATG | 2 cut(s) | 179, 257 |
| Ksp22I | TGATCA | 2 cut(s) | 21, 433 |
| Kzo9I | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| LpnPI | CCDG | 3 cut(s) | 39, 378, 396 |
| MaeI | CTAG | 2 cut(s) | 282, 450 |
| MaeIII | GTNAC | 2 cut(s) | 82, 157 |
| MalI | GATC | 5 cut(s) | 23, 78, 200, 271, 435 |
| MboI | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| MboII | GAAGA | 3 cut(s) | 222, 225, 231 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MluCI | AATT | 9 cut(s) | 16, 152, 277, 289, 304, 331, 352, 427, 437 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MnlI | CCTC | 1 cut(s) | 400 |
| NdeII | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| NlaIII | CATG | 2 cut(s) | 179, 257 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 346 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| Sau3AI | GATC | 5 cut(s) | 21, 76, 198, 269, 433 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SetI | ASST | 2 cut(s) | 372, 392 |
| Sse9I | AATT | 9 cut(s) | 16, 152, 277, 289, 304, 331, 352, 427, 437 |
| SspMI | CTAG | 2 cut(s) | 282, 450 |
| TaqI | TCGA | 2 cut(s) | 268, 421 |
| TasI | AATT | 9 cut(s) | 16, 152, 277, 289, 304, 331, 352, 427, 437 |
| TfiI | GAWTC | 1 cut(s) | 346 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 6 cut(s) | 126, 164, 165, 183, 225, 242 |
| XapI | RAATTY | 4 cut(s) | 152, 277, 289, 427 |
| XspI | CTAG | 2 cut(s) | 282, 450 |