gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 614 |
| AccB1I | GGYRCC | 1 cut(s) | 585 |
| AccBSI | CCGCTC | 2 cut(s) | 553, 559 |
| AciI | CCGC | 3 cut(s) | 437, 551, 559 |
| AclWI | GGATC | 2 cut(s) | 88, 671 |
| AcsI | RAATTY | 1 cut(s) | 633 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 436 |
| AflIII | ACRYGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 3 cut(s) | 55, 164, 470 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 15, 205, 525, 654 |
| AluI | AGCT | 4 cut(s) | 15, 205, 525, 654 |
| Alw26I | GTCTC | 1 cut(s) | 670 |
| AlwI | GGATC | 2 cut(s) | 88, 671 |
| Ama87I | CYCGRG | 3 cut(s) | 554, 595, 616 |
| AoxI | GGCC | 1 cut(s) | 332 |
| ApaI | GGGCCC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| ApoI | RAATTY | 1 cut(s) | 633 |
| AseI | ATTAAT | 1 cut(s) | 29 |
| AspA2I | CCTAGG | 1 cut(s) | 581 |
| AspLEI | GCGC | 1 cut(s) | 594 |
| AspS9I | GGNCC | 2 cut(s) | 332, 333 |
| AsuHPI | GGTGA | 2 cut(s) | 227, 471 |
| AvaI | CYCGRG | 3 cut(s) | 554, 595, 616 |
| AvrII | CCTAGG | 1 cut(s) | 581 |
| BaeGI | GKGCMC | 1 cut(s) | 336 |
| BanI | GGYRCC | 1 cut(s) | 585 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 2 cut(s) | 438, 452 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 290, 324 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BcoDI | GTCTC | 1 cut(s) | 670 |
| BfaI | CTAG | 2 cut(s) | 150, 582 |
| BfmI | CTRYAG | 2 cut(s) | 101, 526 |
| BfoI | RGCGCY | 1 cut(s) | 595 |
| BfuAI | ACCTGC | 1 cut(s) | 614 |
| BisI | GCNGC | 3 cut(s) | 203, 551, 560 |
| BlnI | CCTAGG | 1 cut(s) | 581 |
| BlsI | GCNGC | 3 cut(s) | 204, 552, 561 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| BmeT110I | CYCGRG | 3 cut(s) | 554, 595, 616 |
| BmgT120I | GGNCC | 2 cut(s) | 332, 333 |
| BmiI | GGNNCC | 2 cut(s) | 334, 587 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmrI | ACTGGG | 1 cut(s) | 550 |
| BmuI | ACTGGG | 1 cut(s) | 550 |
| BpmI | CTGGAG | 1 cut(s) | 676 |
| BpuEI | CTTGAG | 3 cut(s) | 348, 419, 670 |
| BsaJI | CCNNGG | 2 cut(s) | 581, 680 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 436 |
| Bse118I | RCCGGY | 1 cut(s) | 588 |
| Bse1I | ACTGG | 1 cut(s) | 545 |
| Bse3DI | GCAATG | 1 cut(s) | 225 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseDI | CCNNGG | 2 cut(s) | 581, 680 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BseMI | GCAATG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 545 |
| BseSI | GKGCMC | 1 cut(s) | 336 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BshFI | GGCC | 1 cut(s) | 334 |
| BshNI | GGYRCC | 1 cut(s) | 585 |
| BsiHKCI | CYCGRG | 3 cut(s) | 554, 595, 616 |
| BsiSI | CCGG | 1 cut(s) | 589 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BsmAI | GTCTC | 1 cut(s) | 670 |
| BsnI | GGCC | 1 cut(s) | 334 |
| BsoBI | CYCGRG | 3 cut(s) | 554, 595, 616 |
| Bsp120I | GGGCCC | 1 cut(s) | 332 |
| Bsp1286I | GDGCHC | 1 cut(s) | 336 |
| Bsp143I | GATC | 4 cut(s) | 80, 301, 394, 676 |
| BspACI | CCGC | 3 cut(s) | 437, 551, 559 |
| BspANI | GGCC | 1 cut(s) | 334 |
| BspLI | GGNNCC | 2 cut(s) | 334, 587 |
| BspMI | ACCTGC | 1 cut(s) | 614 |
| BspPI | GGATC | 2 cut(s) | 88, 671 |
| BspT107I | GGYRCC | 1 cut(s) | 585 |
| BsrBI | CCGCTC | 2 cut(s) | 553, 559 |
| BsrDI | GCAATG | 1 cut(s) | 225 |
| BsrFI | RCCGGY | 1 cut(s) | 588 |
| BsrI | ACTGG | 1 cut(s) | 545 |
| BssAI | RCCGGY | 1 cut(s) | 588 |
| BssECI | CCNNGG | 2 cut(s) | 581, 680 |
| BssMI | GATC | 4 cut(s) | 80, 301, 394, 676 |
| BssT1I | CCWWGG | 2 cut(s) | 581, 680 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 3 cut(s) | 105, 117, 515 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 611 |
| BstH2I | RGCGCY | 1 cut(s) | 595 |
| BstHHI | GCGC | 1 cut(s) | 594 |
| BstKTI | GATC | 4 cut(s) | 83, 304, 397, 679 |
| BstMAI | GTCTC | 1 cut(s) | 670 |
| BstMBI | GATC | 4 cut(s) | 80, 301, 394, 676 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 556, 559 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstNSI | RCATGY | 1 cut(s) | 456 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 2 cut(s) | 101, 526 |
| BstSLI | GKGCMC | 1 cut(s) | 336 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstX2I | RGATCY | 1 cut(s) | 676 |
| BstYI | RGATCY | 1 cut(s) | 676 |
| BsuRI | GGCC | 1 cut(s) | 334 |
| BtsIMutI | CAGTG | 1 cut(s) | 113 |
| BveI | ACCTGC | 1 cut(s) | 614 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 611 |
| CfoI | GCGC | 1 cut(s) | 594 |
| Cfr10I | RCCGGY | 1 cut(s) | 588 |
| Cfr13I | GGNCC | 2 cut(s) | 332, 333 |
| CseI | GACGC | 1 cut(s) | 345 |
| CviAII | CATG | 2 cut(s) | 453, 464 |
| CviJI | RGCY | 9 cut(s) | 15, 205, 334, 368, 404, 477, 525, 545, 654 |
| CviKI_1 | RGCY | 9 cut(s) | 15, 205, 334, 368, 404, 477, 525, 545, 654 |
| DpnI | GATC | 4 cut(s) | 82, 303, 396, 678 |
| DpnII | GATC | 4 cut(s) | 80, 301, 394, 676 |
| Eco130I | CCWWGG | 2 cut(s) | 581, 680 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco88I | CYCGRG | 3 cut(s) | 554, 595, 616 |
| EcoO109I | RGGNCCY | 1 cut(s) | 333 |
| EcoRI | GAATTC | 1 cut(s) | 633 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 2 cut(s) | 581, 680 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| ErhI | CCWWGG | 2 cut(s) | 581, 680 |
| FaeI | CATG | 2 cut(s) | 456, 467 |
| FaiI | YATR | 9 cut(s) | 320, 340, 342, 388, 390, 444, 454, 465, 491 |
| FatI | CATG | 2 cut(s) | 452, 463 |
| FauNDI | CATATG | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 3 cut(s) | 203, 551, 560 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 3 cut(s) | 203, 551, 560 |
| FspBI | CTAG | 2 cut(s) | 150, 582 |
| GlaI | GCGC | 1 cut(s) | 593 |
| GluI | GCNGC | 3 cut(s) | 203, 551, 560 |
| GsuI | CTGGAG | 1 cut(s) | 676 |
| HaeII | RGCGCY | 1 cut(s) | 595 |
| HaeIII | GGCC | 1 cut(s) | 334 |
| HapII | CCGG | 1 cut(s) | 589 |
| HgaI | GACGC | 1 cut(s) | 345 |
| HhaI | GCGC | 1 cut(s) | 594 |
| Hin1II | CATG | 2 cut(s) | 456, 467 |
| Hin6I | GCGC | 1 cut(s) | 592 |
| HinP1I | GCGC | 1 cut(s) | 592 |
| HindIII | AAGCTT | 1 cut(s) | 13 |
| HinfI | GANTC | 7 cut(s) | 51, 184, 190, 218, 296, 344, 663 |
| HpaII | CCGG | 1 cut(s) | 589 |
| HphI | GGTGA | 2 cut(s) | 227, 471 |
| Hpy188I | TCNGA | 4 cut(s) | 183, 189, 195, 301 |
| Hpy188III | TCNNGA | 5 cut(s) | 161, 293, 398, 597, 616 |
| HpyAV | CCTTC | 1 cut(s) | 496 |
| HpyCH4III | ACNGT | 3 cut(s) | 105, 117, 515 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 556, 559 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92II | CATG | 2 cut(s) | 456, 467 |
| HspAI | GCGC | 1 cut(s) | 592 |
| Kzo9I | GATC | 4 cut(s) | 80, 301, 394, 676 |
| LpnPI | CCDG | 9 cut(s) | 63, 90, 264, 306, 382, 526, 602, 619, 640 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| MaeI | CTAG | 2 cut(s) | 150, 582 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MalI | GATC | 4 cut(s) | 82, 303, 396, 678 |
| MbiI | CCGCTC | 2 cut(s) | 553, 559 |
| MboI | GATC | 4 cut(s) | 80, 301, 394, 676 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MfeI | CAATTG | 1 cut(s) | 64 |
| MflI | RGATCY | 1 cut(s) | 676 |
| MhlI | GDGCHC | 1 cut(s) | 336 |
| MluCI | AATT | 2 cut(s) | 64, 633 |
| MlyI | GAGTC | 3 cut(s) | 290, 353, 672 |
| MnlI | CCTC | 5 cut(s) | 187, 232, 278, 394, 651 |
| MseI | TTAA | 1 cut(s) | 29 |
| MspI | CCGG | 1 cut(s) | 589 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| MunI | CAATTG | 1 cut(s) | 64 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 556, 559 |
| NdeI | CATATG | 1 cut(s) | 388 |
| NdeII | GATC | 4 cut(s) | 80, 301, 394, 676 |
| NlaIII | CATG | 2 cut(s) | 456, 467 |
| NlaIV | GGNNCC | 2 cut(s) | 334, 587 |
| NspI | RCATGY | 1 cut(s) | 456 |
| PaeR7I | CTCGAG | 3 cut(s) | 554, 595, 616 |
| PciI | ACATGT | 1 cut(s) | 452 |
| PfeI | GAWTC | 4 cut(s) | 51, 184, 190, 218 |
| PflFI | GACNNNGTC | 1 cut(s) | 245 |
| PfoI | TCCNGGA | 1 cut(s) | 76 |
| PkrI | GCNGC | 3 cut(s) | 204, 552, 561 |
| PleI | GAGTC | 3 cut(s) | 290, 352, 671 |
| PpsI | GAGTC | 3 cut(s) | 290, 352, 671 |
| PscI | ACATGT | 1 cut(s) | 452 |
| PshBI | ATTAAT | 1 cut(s) | 29 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 2 cut(s) | 334, 587 |
| PspOMI | GGGCCC | 1 cut(s) | 332 |
| PspPI | GGNCC | 2 cut(s) | 332, 333 |
| PspXI | VCTCGAGB | 1 cut(s) | 554 |
| PsuI | RGATCY | 1 cut(s) | 676 |
| PsyI | GACNNNGTC | 1 cut(s) | 245 |
| SaqAI | TTAA | 1 cut(s) | 29 |
| SatI | GCNGC | 3 cut(s) | 203, 551, 560 |
| Sau3AI | GATC | 4 cut(s) | 80, 301, 394, 676 |
| Sau96I | GGNCC | 2 cut(s) | 332, 333 |
| SchI | GAGTC | 3 cut(s) | 290, 353, 672 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SduI | GDGCHC | 1 cut(s) | 336 |
| SetI | ASST | 9 cut(s) | 17, 207, 249, 270, 275, 484, 527, 608, 656 |
| SfcI | CTRYAG | 2 cut(s) | 101, 526 |
| Sfr274I | CTCGAG | 3 cut(s) | 554, 595, 616 |
| SgrAI | CRCCGGYG | 1 cut(s) | 588 |
| SlaI | CTCGAG | 3 cut(s) | 554, 595, 616 |
| SmlI | CTYRAG | 6 cut(s) | 363, 398, 554, 595, 616, 649 |
| SmoI | CTYRAG | 6 cut(s) | 363, 398, 554, 595, 616, 649 |
| Sse9I | AATT | 2 cut(s) | 64, 633 |
| SsiI | CCGC | 3 cut(s) | 437, 551, 559 |
| SspMI | CTAG | 2 cut(s) | 150, 582 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| StyI | CCWWGG | 2 cut(s) | 581, 680 |
| TaaI | ACNGT | 3 cut(s) | 105, 117, 515 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqI | TCGA | 3 cut(s) | 555, 596, 617 |
| TasI | AATT | 2 cut(s) | 64, 633 |
| TauI | GCSGC | 2 cut(s) | 553, 562 |
| TfiI | GAWTC | 4 cut(s) | 51, 184, 190, 218 |
| Tru1I | TTAA | 1 cut(s) | 29 |
| Tru9I | TTAA | 1 cut(s) | 29 |
| TscAI | CASTG | 1 cut(s) | 120 |
| TseI | GCWGC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 3 cut(s) | 335, 431, 506 |
| TspRI | CASTG | 1 cut(s) | 120 |
| Tth111I | GACNNNGTC | 1 cut(s) | 245 |
| VspI | ATTAAT | 1 cut(s) | 29 |
| XapI | RAATTY | 1 cut(s) | 633 |
| XceI | RCATGY | 1 cut(s) | 456 |
| XhoI | CTCGAG | 3 cut(s) | 554, 595, 616 |
| XmaJI | CCTAGG | 1 cut(s) | 581 |
| XspI | CTAG | 2 cut(s) | 150, 582 |