gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 155 | 3.1e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 49, 481 |
| AciI | CCGC | 2 cut(s) | 39, 236 |
| AclI | AACGTT | 1 cut(s) | 132 |
| AclWI | GGATC | 2 cut(s) | 156, 427 |
| AfaI | GTAC | 3 cut(s) | 24, 30, 452 |
| AflIII | ACRYGT | 2 cut(s) | 31, 123 |
| AgsI | TTSAA | 5 cut(s) | 9, 130, 140, 314, 335 |
| AluBI | AGCT | 5 cut(s) | 205, 260, 354, 472, 505 |
| AluI | AGCT | 5 cut(s) | 205, 260, 354, 472, 505 |
| Alw21I | GWGCWC | 2 cut(s) | 262, 507 |
| AlwI | GGATC | 2 cut(s) | 156, 427 |
| ApeKI | GCWGC | 1 cut(s) | 226 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 2 cut(s) | 49, 481 |
| BanII | GRGCYC | 2 cut(s) | 262, 507 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| Bbv12I | GWGCWC | 2 cut(s) | 262, 507 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BccI | CCATC | 2 cut(s) | 40, 508 |
| BceAI | ACGGC | 1 cut(s) | 309 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BisI | GCNGC | 2 cut(s) | 39, 227 |
| BlsI | GCNGC | 2 cut(s) | 40, 228 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmiI | GGNNCC | 3 cut(s) | 51, 102, 483 |
| BmsI | GCATC | 1 cut(s) | 233 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| Bse1I | ACTGG | 2 cut(s) | 26, 104 |
| BseGI | GGATG | 1 cut(s) | 248 |
| BseNI | ACTGG | 2 cut(s) | 26, 104 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| BshNI | GGYRCC | 2 cut(s) | 49, 481 |
| BsiHKAI | GWGCWC | 2 cut(s) | 262, 507 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 2 cut(s) | 262, 507 |
| Bsp143I | GATC | 4 cut(s) | 148, 419, 433, 497 |
| BspACI | CCGC | 2 cut(s) | 39, 236 |
| BspLI | GGNNCC | 3 cut(s) | 51, 102, 483 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspPI | GGATC | 2 cut(s) | 156, 427 |
| BspQI | GCTCTTC | 1 cut(s) | 273 |
| BspT107I | GGYRCC | 2 cut(s) | 49, 481 |
| BsrI | ACTGG | 2 cut(s) | 26, 104 |
| BssMI | GATC | 4 cut(s) | 148, 419, 433, 497 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 188 |
| Bst6I | CTCTTC | 1 cut(s) | 273 |
| BstC8I | GCNNGC | 2 cut(s) | 365, 408 |
| BstDEI | CTNAG | 1 cut(s) | 458 |
| BstF5I | GGATG | 1 cut(s) | 248 |
| BstKTI | GATC | 4 cut(s) | 151, 422, 436, 500 |
| BstMBI | GATC | 4 cut(s) | 148, 419, 433, 497 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 360 |
| BstNSI | RCATGY | 4 cut(s) | 35, 127, 236, 367 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BstX2I | RGATCY | 1 cut(s) | 419 |
| BstYI | RGATCY | 1 cut(s) | 419 |
| BtsCI | GGATG | 1 cut(s) | 248 |
| Cac8I | GCNNGC | 2 cut(s) | 365, 408 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 3 cut(s) | 23, 29, 451 |
| CviAII | CATG | 4 cut(s) | 32, 124, 233, 364 |
| CviQI | GTAC | 3 cut(s) | 23, 29, 451 |
| DdeI | CTNAG | 1 cut(s) | 458 |
| DpnI | GATC | 4 cut(s) | 150, 421, 435, 499 |
| DpnII | GATC | 4 cut(s) | 148, 419, 433, 497 |
| Eam1104I | CTCTTC | 1 cut(s) | 273 |
| EarI | CTCTTC | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 2 cut(s) | 260, 505 |
| Eco24I | GRGCYC | 2 cut(s) | 262, 507 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco53kI | GAGCTC | 2 cut(s) | 260, 505 |
| EcoICRI | GAGCTC | 2 cut(s) | 260, 505 |
| EcoT38I | GRGCYC | 2 cut(s) | 262, 507 |
| FaeI | CATG | 4 cut(s) | 35, 127, 236, 367 |
| FaiI | YATR | 9 cut(s) | 33, 120, 125, 212, 234, 359, 365, 479, 512 |
| FatI | CATG | 4 cut(s) | 31, 123, 232, 363 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 227 |
| FokI | GGATG | 1 cut(s) | 255 |
| FriOI | GRGCYC | 2 cut(s) | 262, 507 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 227 |
| GluI | GCNGC | 2 cut(s) | 39, 227 |
| HapII | CCGG | 1 cut(s) | 425 |
| HgaI | GACGC | 1 cut(s) | 399 |
| Hin1II | CATG | 4 cut(s) | 35, 127, 236, 367 |
| HincII | GTYRAC | 1 cut(s) | 492 |
| HindII | GTYRAC | 1 cut(s) | 492 |
| HindIII | AAGCTT | 1 cut(s) | 352 |
| HinfI | GANTC | 1 cut(s) | 380 |
| HpaI | GTTAAC | 1 cut(s) | 492 |
| HpaII | CCGG | 1 cut(s) | 425 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy166II | GTNNAC | 1 cut(s) | 492 |
| Hpy188I | TCNGA | 3 cut(s) | 192, 433, 502 |
| Hpy188III | TCNNGA | 3 cut(s) | 85, 343, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 492 |
| HpyAV | CCTTC | 3 cut(s) | 169, 341, 464 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 188 |
| HpyCH4IV | ACGT | 2 cut(s) | 132, 272 |
| HpyCH4V | TGCA | 1 cut(s) | 416 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 360 |
| HpyF3I | CTNAG | 1 cut(s) | 458 |
| HpySE526I | ACGT | 2 cut(s) | 132, 272 |
| Hsp92II | CATG | 4 cut(s) | 35, 127, 236, 367 |
| KspAI | GTTAAC | 1 cut(s) | 492 |
| Kzo9I | GATC | 4 cut(s) | 148, 419, 433, 497 |
| LguI | GCTCTTC | 1 cut(s) | 273 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| LweI | GCATC | 1 cut(s) | 233 |
| MaeII | ACGT | 2 cut(s) | 132, 272 |
| MaeIII | GTNAC | 2 cut(s) | 326, 371 |
| MalI | GATC | 4 cut(s) | 150, 421, 435, 499 |
| MboI | GATC | 4 cut(s) | 148, 419, 433, 497 |
| MboII | GAAGA | 2 cut(s) | 80, 290 |
| MflI | RGATCY | 1 cut(s) | 419 |
| MhlI | GDGCHC | 2 cut(s) | 262, 507 |
| MluCI | AATT | 1 cut(s) | 54 |
| MnlI | CCTC | 2 cut(s) | 138, 455 |
| MseI | TTAA | 3 cut(s) | 57, 447, 491 |
| MspA1I | CMGCKG | 1 cut(s) | 472 |
| MspI | CCGG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 360 |
| NdeII | GATC | 4 cut(s) | 148, 419, 433, 497 |
| NlaIII | CATG | 4 cut(s) | 35, 127, 236, 367 |
| NlaIV | GGNNCC | 3 cut(s) | 51, 102, 483 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NspI | RCATGY | 4 cut(s) | 35, 127, 236, 367 |
| PaeI | GCATGC | 1 cut(s) | 367 |
| PciI | ACATGT | 2 cut(s) | 31, 123 |
| PciSI | GCTCTTC | 1 cut(s) | 273 |
| PfeI | GAWTC | 1 cut(s) | 380 |
| PkrI | GCNGC | 2 cut(s) | 40, 228 |
| PscI | ACATGT | 2 cut(s) | 31, 123 |
| Psp124BI | GAGCTC | 2 cut(s) | 262, 507 |
| Psp1406I | AACGTT | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 3 cut(s) | 51, 102, 483 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PsuI | RGATCY | 1 cut(s) | 419 |
| PvuII | CAGCTG | 1 cut(s) | 472 |
| RsaI | GTAC | 3 cut(s) | 24, 30, 452 |
| RsaNI | GTAC | 3 cut(s) | 23, 29, 451 |
| SacI | GAGCTC | 2 cut(s) | 262, 507 |
| SapI | GCTCTTC | 1 cut(s) | 273 |
| SaqAI | TTAA | 3 cut(s) | 57, 447, 491 |
| SatI | GCNGC | 2 cut(s) | 39, 227 |
| Sau3AI | GATC | 4 cut(s) | 148, 419, 433, 497 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SduI | GDGCHC | 2 cut(s) | 262, 507 |
| SetI | ASST | 9 cut(s) | 135, 207, 262, 275, 333, 356, 456, 474, 507 |
| SfaNI | GCATC | 1 cut(s) | 233 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| SphI | GCATGC | 1 cut(s) | 367 |
| Sse9I | AATT | 1 cut(s) | 54 |
| SsiI | CCGC | 2 cut(s) | 39, 236 |
| SstI | GAGCTC | 2 cut(s) | 262, 507 |
| TaaI | ACNGT | 2 cut(s) | 22, 188 |
| TaiI | ACGT | 2 cut(s) | 135, 275 |
| TaqI | TCGA | 1 cut(s) | 507 |
| TasI | AATT | 1 cut(s) | 54 |
| TatI | WGTACW | 1 cut(s) | 28 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 380 |
| Tru1I | TTAA | 3 cut(s) | 57, 447, 491 |
| Tru9I | TTAA | 3 cut(s) | 57, 447, 491 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| TseI | GCWGC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 1 cut(s) | 187 |
| TspGWI | ACGGA | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XceI | RCATGY | 4 cut(s) | 35, 127, 236, 367 |