Rorug05G0138600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000034
Physical Location & Seq
Forward (+)
12570500 .. 12573064
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0138600.1

Sequence Viewer

Length: 1347 bp
ATGGCGGCAGCAGCAGCGCTATCCACATCTCCACTGTTCAACATAGACTCGAACTCCGTCGACGTTGACAAGCTCAGCCACGAGATCTTCTCCATTCTCGAGAACAAGTTCCTCTTCGGTTACGACATTGATAACTCCAAAGACACTACCGCTACCACGCCTCTTCATCACATGAAGTCTAGCAAGCACATCACCGGCAAGGTCAGAATCTTAACCATCGACGGCGCCGGAGCCACCGACGGGATTTTGGCAGCCAAGTCTCTCGTCCACCTCGAGTCCTGCATCCGCCGCAAGTCCGGCGACTCCACTGCCGCCGTTTCTGACTACTTTGATGTTGTTTCTGGCTCCGGCGTTGGCGGCATTCTCGCGGCTCTGCTCTTCACCAAGGCAGCCGACGGATCGGGCCGGCCGGTGTTTACTGCTCAGGAGGCACTCAACTTCCTTTTGGAAAACCGAAGTAAGATTTTCAAGTCGTCTACGGCAGGGATTATCCGGCGAGTTTTCCGGCCGGCGAAGGCGGAGAAGGAGAGGGAGAGGCTCTTCCGCAAGACGTTCGGCGATCAGCTGACGATGAAGGACACCCTTAAGTCGGTGTTGATTCCCTGCTACGACATGTCGTCCCGCGCGCCTTTTCTGTTTTCGCGCGCCGACGCTGTGGAGATGGACGGCTACGATTTCAAGATGAAGGACGTGTGCACCGCCACGTGCGCGCATCCGGCGGCGACGGGGGCCGTGGAGGTTAAGTCAGTCGACGGGAGGACGAAGATCATGGCCGTCGACGGCGGAATTGCCATGAACAATCCGACGGCCGCGGCTATTACGCACGTTCTGAATAATAAGCAAGAGTTTCCGTTCTGTTCTGGTGTGGAGGATCTCTTGGTGGTGTCACTCGGAAATGGAGAGTCGGAGTTCGGAAACTTGTCGCCTTCTGGCTGCCTAAAAATCGCCGGCGAAGGAGCTTCAGACTTGGTTGATCAAGCTGTTTCAATGGCATTTGGGCAATCCCGGACCAGCAATTATGTTCGCGTGCAAGCCACCGGCATCATAGCCAAAAACCCTGCGCGCATGGACCACTCCAACAACAAGAACAACACCAATACAGACATATTGGCTTTAACAGAGGAAATGTTGGCACAGAGAAACGTGGAGTCGATTTTATTCGAGGGGAAGAAAATGGTGGAGAGCACGAATTTGAAGAAGTTGGAGTTGTTCGCCGGAGAGGTGATCAAGGAAGAAGAGAGGAGAAAGACCAGCATTTTGCCGACGGTGGCTTTGAAGCAGACTTCGGGGTCGCCAGCCAGAACATCGTCTGCTACTACGTTATCGAGTCTGTCATCTTCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

448

Amino Acids

48.02

Weight (kDa)

7.6

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 72 - 273 7e-14 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1288
AccB1I GGYRCC 1 cut(s) 224
AccI GTMKAC 4 cut(s) 60, 476, 750, 777
AccII CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
AclWI GGATC 2 cut(s) 406, 879
AcoI YGGCCR 4 cut(s) 407, 506, 771, 807
AcsI RAATTY 1 cut(s) 1189
AcuI CTGAAG 1 cut(s) 945
AcvI CACGTG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 225
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 240, 589
AflII CTTAAG 1 cut(s) 584
AflIII ACRYGT 2 cut(s) 612, 690
AgsI TTSAA 6 cut(s) 40, 469, 679, 987, 1195, 1276
AhdI GACNNNNNGTC 1 cut(s) 616
AjiI CACGTC 1 cut(s) 691
AluBI AGCT 4 cut(s) 73, 565, 959, 980
AluI AGCT 4 cut(s) 73, 565, 959, 980
Alw21I GWGCWC 2 cut(s) 698, 1187
Alw26I GTCTC 1 cut(s) 264
Alw44I GTGCAC 1 cut(s) 694
AlwI GGATC 2 cut(s) 406, 879
Ama87I CYCGRG 2 cut(s) 98, 272
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 6 cut(s) 403, 407, 506, 729, 771, 807
ApaLI GTGCAC 1 cut(s) 694
ApeKI GCWGC 6 cut(s) 8, 11, 14, 251, 389, 933
ApoI RAATTY 1 cut(s) 1189
ArsI GACNNNNNNTTYG 4 cut(s) 1240, 1255, 1272, 1287
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 4 cut(s) 403, 729, 1008, 1069
AsuC2I CCSGG 1 cut(s) 1006
AsuHPI GGTGA 3 cut(s) 184, 373, 1234
AvaI CYCGRG 2 cut(s) 98, 272
AvaII GGWCC 2 cut(s) 1008, 1069
BaeGI GKGCMC 1 cut(s) 698
BanI GGYRCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 80
BbrPI CACGTG 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 698, 1187
BbvI GCAGC 6 cut(s) 20, 23, 26, 263, 401, 920
BccI CCATC 2 cut(s) 224, 655
BceAI ACGGC 8 cut(s) 238, 299, 495, 682, 716, 758, 796, 822
BcgI CGANNNNNNTGC 4 cut(s) 290, 324, 535, 569
BclI TGATCA 2 cut(s) 973, 1224
BcnI CCSGG 1 cut(s) 1006
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 2 cut(s) 20, 228
BfrI CTTAAG 1 cut(s) 584
BglII AGATCT 1 cut(s) 84
BlpI GCTNAGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 1006
Bme18I GGWCC 2 cut(s) 1008, 1069
BmeRI GACNNNNNGTC 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 98, 272
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 4 cut(s) 403, 729, 1008, 1069
BmiI GGNNCC 4 cut(s) 226, 232, 346, 730
BmrFI CCNGG 1 cut(s) 1006
BmsI GCATC 3 cut(s) 291, 721, 1050
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 1006
BsaAI YACGTR 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 384, 732, 810
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 589
Bse118I RCCGGY 6 cut(s) 194, 405, 409, 508, 947, 1037
BseDI CCNNGG 3 cut(s) 384, 732, 810
BseGI GGATG 2 cut(s) 282, 712
BseLI CCNNNNNNNGG 2 cut(s) 240, 589
BseMII CTCAG 2 cut(s) 88, 437
BsePI GCGCGC 4 cut(s) 624, 643, 708, 1061
BseRI GAGGAG 1 cut(s) 1255
BseSI GKGCMC 1 cut(s) 698
BseX3I CGGCCG 3 cut(s) 407, 506, 807
BseXI GCAGC 6 cut(s) 20, 23, 26, 263, 401, 920
Bsh1236I CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
Bsh1285I CGRYCG 3 cut(s) 410, 509, 810
BshFI GGCC 6 cut(s) 405, 409, 508, 731, 773, 809
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 3 cut(s) 410, 509, 810
BsiHKAI GWGCWC 2 cut(s) 698, 1187
BsiHKCI CYCGRG 2 cut(s) 98, 272
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 240, 589
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 6 cut(s) 405, 409, 508, 731, 773, 809
BsoBI CYCGRG 2 cut(s) 98, 272
Bsp1286I GDGCHC 2 cut(s) 698, 1187
Bsp143I GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
Bsp1720I GCTNAGC 1 cut(s) 74
BspANI GGCC 6 cut(s) 405, 409, 508, 731, 773, 809
BspCNI CTCAG 2 cut(s) 87, 436
BspFNI CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
BspLI GGNNCC 4 cut(s) 226, 232, 346, 730
BspPI GGATC 2 cut(s) 406, 879
BspQI GCTCTTC 2 cut(s) 383, 545
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 584
BsrFI RCCGGY 6 cut(s) 194, 405, 409, 508, 947, 1037
BssAI RCCGGY 6 cut(s) 194, 405, 409, 508, 947, 1037
BssECI CCNNGG 3 cut(s) 384, 732, 810
BssHII GCGCGC 4 cut(s) 624, 643, 708, 1061
BssMI GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 36, 1267
Bst6I CTCTTC 5 cut(s) 119, 168, 383, 545, 1230
BstACI GRCGYC 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 705
BstDEI CTNAG 2 cut(s) 74, 423
BstDSI CCRYGG 2 cut(s) 732, 810
BstF5I GGATG 2 cut(s) 282, 712
BstFNI CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
BstH2I RGCGCY 2 cut(s) 20, 228
BstKTI GATC 7 cut(s) 87, 401, 562, 768, 874, 976, 1227
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
BstMCI CGRYCG 3 cut(s) 410, 509, 810
BstMWI GCNNNNNNNGC 9 cut(s) 11, 14, 288, 297, 357, 428, 707, 716, 728
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 1004
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
BstV1I GCAGC 6 cut(s) 20, 23, 26, 263, 401, 920
BstX2I RGATCY 2 cut(s) 84, 871
BstYI RGATCY 2 cut(s) 84, 871
BstZI CGGCCG 3 cut(s) 407, 506, 807
BsuRI GGCC 6 cut(s) 405, 409, 508, 731, 773, 809
BtgI CCRYGG 2 cut(s) 732, 810
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 2 cut(s) 282, 712
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 32, 306
Cfr10I RCCGGY 6 cut(s) 194, 405, 409, 508, 947, 1037
Cfr13I GGNCC 4 cut(s) 403, 729, 1008, 1069
Cfr42I CCGCGG 1 cut(s) 813
CseI GACGC 1 cut(s) 659
CviAII CATG 5 cut(s) 172, 613, 769, 793, 1066
DdeI CTNAG 2 cut(s) 74, 423
DinI GGCGCC 1 cut(s) 226
DpnI GATC 7 cut(s) 86, 400, 561, 767, 873, 975, 1226
DpnII GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
DrdI GACNNNNNNGTC 1 cut(s) 1288
DriI GACNNNNNGTC 1 cut(s) 616
DseDI GACNNNNNNGTC 1 cut(s) 1288
EaeI YGGCCR 4 cut(s) 407, 506, 771, 807
EagI CGGCCG 3 cut(s) 407, 506, 807
Eam1104I CTCTTC 5 cut(s) 119, 168, 383, 545, 1230
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 5 cut(s) 119, 168, 383, 545, 1230
EciI GGCGGA 3 cut(s) 275, 533, 798
EclXI CGGCCG 3 cut(s) 407, 506, 807
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 2 cut(s) 1008, 1069
Eco47III AGCGCT 1 cut(s) 18
Eco52I CGGCCG 3 cut(s) 407, 506, 807
Eco57I CTGAAG 1 cut(s) 945
Eco72I CACGTG 1 cut(s) 705
Eco88I CYCGRG 2 cut(s) 98, 272
EcoT14I CCWWGG 1 cut(s) 384
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 175, 616, 772, 796, 1069
FaiI YATR 9 cut(s) 44, 173, 614, 770, 794, 1020, 1046, 1067, 1106
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 604
FatI CATG 5 cut(s) 171, 612, 768, 792, 1065
FauI CCCGC 1 cut(s) 629
FbaI TGATCA 2 cut(s) 973, 1224
FblI GTMKAC 4 cut(s) 60, 476, 750, 777
FokI GGATG 2 cut(s) 269, 699
FseI GGCCGGCC 1 cut(s) 409
FspBI CTAG 1 cut(s) 180
HaeII RGCGCY 2 cut(s) 20, 228
HaeIII GGCC 6 cut(s) 405, 409, 508, 731, 773, 809
HgaI GACGC 1 cut(s) 659
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 5 cut(s) 175, 616, 772, 796, 1069
HincII GTYRAC 4 cut(s) 61, 67, 751, 778
HindII GTYRAC 4 cut(s) 61, 67, 751, 778
HinfI GANTC 8 cut(s) 47, 207, 275, 302, 598, 902, 1148, 1327
HphI GGTGA 3 cut(s) 184, 373, 1234
Hpy166II GTNNAC 8 cut(s) 61, 67, 268, 417, 477, 696, 751, 778
Hpy188I TCNGA 8 cut(s) 206, 322, 804, 831, 893, 907, 914, 964
Hpy188III TCNNGA 4 cut(s) 98, 100, 425, 679
Hpy8I GTNNAC 8 cut(s) 61, 67, 268, 417, 477, 696, 751, 778
HpyAV CCTTC 6 cut(s) 508, 517, 568, 679, 936, 947
HpyCH4III ACNGT 2 cut(s) 36, 1267
HpyCH4IV ACGT 7 cut(s) 63, 551, 690, 704, 825, 1143, 1319
HpyCH4V TGCA 3 cut(s) 282, 696, 1030
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 14, 288, 297, 357, 428, 707, 716, 728
HpyF3I CTNAG 2 cut(s) 74, 423
HpySE526I ACGT 7 cut(s) 63, 551, 690, 704, 825, 1143, 1319
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 5 cut(s) 175, 616, 772, 796, 1069
KasI GGCGCC 1 cut(s) 224
KroI GCCGGC 3 cut(s) 405, 508, 947
KroNI GCCGGC 3 cut(s) 407, 510, 949
Ksp22I TGATCA 2 cut(s) 973, 1224
KspI CCGCGG 1 cut(s) 813
Kzo9I GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
LguI GCTCTTC 2 cut(s) 383, 545
LmnI GCTCC 3 cut(s) 230, 350, 956
Lsp1109I GCAGC 6 cut(s) 20, 23, 26, 263, 401, 920
LweI GCATC 3 cut(s) 291, 721, 1050
MaeI CTAG 1 cut(s) 180
MaeII ACGT 7 cut(s) 63, 551, 690, 704, 825, 1143, 1319
MaeIII GTNAC 2 cut(s) 119, 885
MalI GATC 7 cut(s) 86, 400, 561, 767, 873, 975, 1226
MboI GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
MflI RGATCY 2 cut(s) 84, 871
MhlI GDGCHC 2 cut(s) 698, 1187
MluCI AATT 3 cut(s) 786, 1015, 1189
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 6 cut(s) 41, 284, 296, 911, 1157, 1336
MmeI TCCRAC 4 cut(s) 827, 885, 1101, 1182
MreI CGCCGGCG 1 cut(s) 947
MroNI GCCGGC 3 cut(s) 405, 508, 947
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 4 cut(s) 212, 585, 741, 1115
MslI CAYNNNNRTG 1 cut(s) 1339
MspA1I CMGCKG 2 cut(s) 565, 812
MspCI CTTAAG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 1006
Mva1269I GAATGC 1 cut(s) 360
MvnI CGCG 9 cut(s) 368, 624, 626, 643, 645, 710, 812, 1026, 1063
MwoI GCNNNNNNNGC 9 cut(s) 11, 14, 288, 297, 357, 428, 707, 716, 728
NaeI GCCGGC 3 cut(s) 407, 510, 949
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 1 cut(s) 1006
NdeII GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
NgoMIV GCCGGC 3 cut(s) 405, 508, 947
NlaIII CATG 5 cut(s) 175, 616, 772, 796, 1069
NlaIV GGNNCC 4 cut(s) 226, 232, 346, 730
NmuCI GTSAC 1 cut(s) 885
NspI RCATGY 1 cut(s) 616
PaeR7I CTCGAG 2 cut(s) 98, 272
PauI GCGCGC 4 cut(s) 624, 643, 708, 1061
PciI ACATGT 1 cut(s) 612
PciSI GCTCTTC 2 cut(s) 383, 545
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 360
PdiI GCCGGC 3 cut(s) 407, 510, 949
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 207, 598
PfoI TCCNGGA 1 cut(s) 1004
PleI GAGTC 6 cut(s) 41, 283, 296, 910, 1156, 1335
PluTI GGCGCC 1 cut(s) 228
PmaCI CACGTG 1 cut(s) 705
PmlI CACGTG 1 cut(s) 705
PpsI GAGTC 6 cut(s) 41, 283, 296, 910, 1156, 1335
Ppu21I YACGTR 1 cut(s) 705
PscI ACATGT 1 cut(s) 612
PspCI CACGTG 1 cut(s) 705
PspN4I GGNNCC 4 cut(s) 226, 232, 346, 730
PspPI GGNCC 4 cut(s) 403, 729, 1008, 1069
PspXI VCTCGAGB 1 cut(s) 272
PsuI RGATCY 2 cut(s) 84, 871
PteI GCGCGC 4 cut(s) 624, 643, 708, 1061
PvuII CAGCTG 1 cut(s) 565
RigI GGCCGGCC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 1339
SacII CCGCGG 1 cut(s) 813
SalI GTCGAC 3 cut(s) 59, 749, 776
SapI GCTCTTC 2 cut(s) 383, 545
SaqAI TTAA 4 cut(s) 212, 585, 741, 1115
Sau3AI GATC 7 cut(s) 84, 398, 559, 765, 871, 973, 1224
Sau96I GGNCC 4 cut(s) 403, 729, 1008, 1069
SchI GAGTC 6 cut(s) 41, 284, 296, 911, 1157, 1336
ScrFI CCNGG 1 cut(s) 1006
SduI GDGCHC 2 cut(s) 698, 1187
SfaNI GCATC 3 cut(s) 291, 721, 1050
SfoI GGCGCC 1 cut(s) 226
Sfr274I CTCGAG 2 cut(s) 98, 272
Sfr303I CCGCGG 1 cut(s) 813
SgrAI CRCCGGYG 1 cut(s) 947
SgrBI CCGCGG 1 cut(s) 813
SgrDI CGTCGACG 2 cut(s) 59, 776
SinI GGWCC 2 cut(s) 1008, 1069
SlaI CTCGAG 2 cut(s) 98, 272
SmiMI CAYNNNNRTG 1 cut(s) 1339
SmlI CTYRAG 3 cut(s) 98, 272, 584
SmoI CTYRAG 3 cut(s) 98, 272, 584
Sse9I AATT 3 cut(s) 786, 1015, 1189
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 1004
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 36, 1267
TaiI ACGT 7 cut(s) 66, 554, 693, 707, 828, 1146, 1322
TasI AATT 3 cut(s) 786, 1015, 1189
TauI GCSGC 8 cut(s) 8, 291, 314, 360, 371, 722, 812, 815
TfiI GAWTC 2 cut(s) 207, 598
Tru1I TTAA 4 cut(s) 212, 585, 741, 1115
Tru9I TTAA 4 cut(s) 212, 585, 741, 1115
TscAI CASTG 2 cut(s) 39, 313
TseFI GTSAC 1 cut(s) 885
TseI GCWGC 6 cut(s) 8, 11, 14, 251, 389, 933
Tsp45I GTSAC 1 cut(s) 885
TspDTI ATGAA 5 cut(s) 155, 188, 587, 698, 809
TspGWI ACGGA 3 cut(s) 46, 411, 840
TspRI CASTG 2 cut(s) 39, 313
Vha464I CTTAAG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 1008, 1069
XapI RAATTY 1 cut(s) 1189
XceI RCATGY 1 cut(s) 616
XhoI CTCGAG 2 cut(s) 98, 272
XmiI GTMKAC 4 cut(s) 60, 476, 750, 777
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.