gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 402 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 758 |
| AccII | CGCG | 1 cut(s) | 651 |
| AccIII | TCCGGA | 1 cut(s) | 175 |
| AciI | CCGC | 5 cut(s) | 200, 292, 610, 651, 745 |
| AclWI | GGATC | 1 cut(s) | 696 |
| AcoI | YGGCCR | 1 cut(s) | 694 |
| AcsI | RAATTY | 1 cut(s) | 108 |
| AcuI | CTGAAG | 2 cut(s) | 218, 226 |
| AfaI | GTAC | 1 cut(s) | 325 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 758 |
| AgsI | TTSAA | 4 cut(s) | 145, 209, 432, 521 |
| AluBI | AGCT | 7 cut(s) | 212, 232, 477, 539, 563, 741, 782 |
| AluI | AGCT | 7 cut(s) | 212, 232, 477, 539, 563, 741, 782 |
| AlwI | GGATC | 1 cut(s) | 696 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 139 |
| Aor13HI | TCCGGA | 1 cut(s) | 175 |
| AoxI | GGCC | 2 cut(s) | 451, 694 |
| ApoI | RAATTY | 1 cut(s) | 108 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 664, 696 |
| AseI | ATTAAT | 1 cut(s) | 369 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| AspS9I | GGNCC | 2 cut(s) | 452, 713 |
| AsuC2I | CCSGG | 1 cut(s) | 407 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 592 |
| AvaII | GGWCC | 1 cut(s) | 713 |
| BaeGI | GKGCMC | 1 cut(s) | 405 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BanI | GGYRCC | 1 cut(s) | 402 |
| BauI | CACGAG | 1 cut(s) | 642 |
| BccI | CCATC | 4 cut(s) | 25, 509, 760, 793 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 371, 405 |
| BcnI | CCSGG | 1 cut(s) | 407 |
| BfaI | CTAG | 2 cut(s) | 105, 330 |
| BisI | GCNGC | 2 cut(s) | 201, 652 |
| BlsI | GCNGC | 2 cut(s) | 202, 653 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| Bme18I | GGWCC | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 2 cut(s) | 452, 713 |
| BmiI | GGNNCC | 3 cut(s) | 27, 404, 736 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 2 cut(s) | 40, 502 |
| BpuEI | CTTGAG | 2 cut(s) | 241, 468 |
| BpuMI | CCSGG | 1 cut(s) | 407 |
| BsaBI | GATNNNNATC | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 2 cut(s) | 114, 757 |
| BsaWI | WCCGGW | 1 cut(s) | 175 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 758 |
| Bse1I | ACTGG | 2 cut(s) | 579, 637 |
| Bse3DI | GCAATG | 1 cut(s) | 524 |
| Bse8I | GATNNNNATC | 1 cut(s) | 431 |
| BseAI | TCCGGA | 1 cut(s) | 175 |
| BseDI | CCNNGG | 2 cut(s) | 114, 757 |
| BseGI | GGATG | 5 cut(s) | 55, 184, 262, 734, 752 |
| BseJI | GATNNNNATC | 1 cut(s) | 431 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 758 |
| BseMI | GCAATG | 1 cut(s) | 524 |
| BseNI | ACTGG | 2 cut(s) | 579, 637 |
| BseSI | GKGCMC | 1 cut(s) | 405 |
| BsgI | GTGCAG | 2 cut(s) | 140, 603 |
| Bsh1236I | CGCG | 1 cut(s) | 651 |
| BshFI | GGCC | 2 cut(s) | 453, 696 |
| BshNI | GGYRCC | 1 cut(s) | 402 |
| BsiSI | CCGG | 2 cut(s) | 176, 407 |
| BslFI | GGGAC | 1 cut(s) | 666 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 758 |
| BsmFI | GGGAC | 1 cut(s) | 666 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| BsnI | GGCC | 2 cut(s) | 453, 696 |
| Bsp1286I | GDGCHC | 1 cut(s) | 405 |
| Bsp13I | TCCGGA | 1 cut(s) | 175 |
| Bsp143I | GATC | 1 cut(s) | 701 |
| BspACI | CCGC | 5 cut(s) | 200, 292, 610, 651, 745 |
| BspANI | GGCC | 2 cut(s) | 453, 696 |
| BspEI | TCCGGA | 1 cut(s) | 175 |
| BspFNI | CGCG | 1 cut(s) | 651 |
| BspHI | TCATGA | 1 cut(s) | 438 |
| BspLI | GGNNCC | 3 cut(s) | 27, 404, 736 |
| BspPI | GGATC | 1 cut(s) | 696 |
| BspT107I | GGYRCC | 1 cut(s) | 402 |
| BsrDI | GCAATG | 1 cut(s) | 524 |
| BsrI | ACTGG | 2 cut(s) | 579, 637 |
| BssECI | CCNNGG | 2 cut(s) | 114, 757 |
| BssMI | GATC | 1 cut(s) | 701 |
| BssSI | CACGAG | 1 cut(s) | 642 |
| BssT1I | CCWWGG | 1 cut(s) | 114 |
| Bst2BI | CACGAG | 1 cut(s) | 642 |
| Bst4CI | ACNGT | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 197 |
| BstDSI | CCRYGG | 1 cut(s) | 757 |
| BstF5I | GGATG | 5 cut(s) | 55, 184, 262, 734, 752 |
| BstFNI | CGCG | 1 cut(s) | 651 |
| BstKTI | GATC | 1 cut(s) | 704 |
| BstMBI | GATC | 1 cut(s) | 701 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 209 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSLI | GKGCMC | 1 cut(s) | 405 |
| BstUI | CGCG | 1 cut(s) | 651 |
| BstX2I | RGATCY | 1 cut(s) | 701 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 635 |
| BstYI | RGATCY | 1 cut(s) | 701 |
| BsuRI | GGCC | 2 cut(s) | 453, 696 |
| BtgI | CCRYGG | 1 cut(s) | 757 |
| BtsCI | GGATG | 5 cut(s) | 55, 184, 262, 734, 752 |
| BtsI | GCAGTG | 2 cut(s) | 76, 192 |
| BtsIMutI | CAGTG | 2 cut(s) | 76, 192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 139 |
| CciI | TCATGA | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 2 cut(s) | 452, 713 |
| CseI | GACGC | 1 cut(s) | 657 |
| Csp6I | GTAC | 1 cut(s) | 324 |
| CviAII | CATG | 4 cut(s) | 58, 77, 439, 692 |
| CviQI | GTAC | 1 cut(s) | 324 |
| DpnI | GATC | 1 cut(s) | 703 |
| DpnII | GATC | 1 cut(s) | 701 |
| EaeI | YGGCCR | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 1 cut(s) | 602 |
| EarI | CTCTTC | 1 cut(s) | 602 |
| Eco130I | CCWWGG | 1 cut(s) | 114 |
| Eco47I | GGWCC | 1 cut(s) | 713 |
| Eco57I | CTGAAG | 2 cut(s) | 218, 226 |
| EcoRI | GAATTC | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 1 cut(s) | 114 |
| ErhI | CCWWGG | 1 cut(s) | 114 |
| FaeI | CATG | 4 cut(s) | 61, 80, 442, 695 |
| FaqI | GGGAC | 1 cut(s) | 666 |
| FatI | CATG | 4 cut(s) | 57, 76, 438, 691 |
| FauI | CCCGC | 1 cut(s) | 752 |
| FauNDI | CATATG | 2 cut(s) | 193, 724 |
| Fnu4HI | GCNGC | 2 cut(s) | 201, 652 |
| FokI | GGATG | 5 cut(s) | 62, 191, 269, 739, 741 |
| Fsp4HI | GCNGC | 2 cut(s) | 201, 652 |
| FspBI | CTAG | 2 cut(s) | 105, 330 |
| GluI | GCNGC | 2 cut(s) | 201, 652 |
| HaeIII | GGCC | 2 cut(s) | 453, 696 |
| HapII | CCGG | 2 cut(s) | 176, 407 |
| HgaI | GACGC | 1 cut(s) | 657 |
| Hin1II | CATG | 4 cut(s) | 61, 80, 442, 695 |
| HindIII | AAGCTT | 2 cut(s) | 210, 230 |
| HinfI | GANTC | 5 cut(s) | 283, 383, 416, 578, 583 |
| HpaII | CCGG | 2 cut(s) | 176, 407 |
| HphI | GGTGA | 2 cut(s) | 292, 592 |
| Hpy166II | GTNNAC | 1 cut(s) | 647 |
| Hpy188I | TCNGA | 2 cut(s) | 237, 421 |
| Hpy188III | TCNNGA | 4 cut(s) | 176, 220, 439, 518 |
| Hpy8I | GTNNAC | 1 cut(s) | 647 |
| HpyAV | CCTTC | 3 cut(s) | 145, 326, 715 |
| HpyCH4III | ACNGT | 1 cut(s) | 141 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 5 cut(s) | 121, 133, 162, 553, 620 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 209 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| Hsp92II | CATG | 4 cut(s) | 61, 80, 442, 695 |
| Kpn2I | TCCGGA | 1 cut(s) | 175 |
| Kzo9I | GATC | 1 cut(s) | 701 |
| LmnI | GCTCC | 4 cut(s) | 25, 536, 746, 787 |
| LweI | GCATC | 2 cut(s) | 40, 502 |
| MaeI | CTAG | 2 cut(s) | 105, 330 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 3 cut(s) | 259, 270, 491 |
| MalI | GATC | 1 cut(s) | 703 |
| MboI | GATC | 1 cut(s) | 701 |
| MboII | GAAGA | 1 cut(s) | 589 |
| MflI | RGATCY | 1 cut(s) | 701 |
| MhlI | GDGCHC | 1 cut(s) | 405 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 2 cut(s) | 108, 155 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 2 cut(s) | 377, 410 |
| MmeI | TCCRAC | 2 cut(s) | 325, 444 |
| MnlI | CCTC | 5 cut(s) | 175, 465, 598, 605, 668 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| MroI | TCCGGA | 1 cut(s) | 175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 3 cut(s) | 44, 336, 369 |
| MslI | CAYNNNNRTG | 1 cut(s) | 727 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspI | CCGG | 2 cut(s) | 176, 407 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MvnI | CGCG | 1 cut(s) | 651 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 209 |
| NciI | CCSGG | 1 cut(s) | 407 |
| NdeI | CATATG | 2 cut(s) | 193, 724 |
| NdeII | GATC | 1 cut(s) | 701 |
| NlaIII | CATG | 4 cut(s) | 61, 80, 442, 695 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 404, 736 |
| NmuCI | GTSAC | 3 cut(s) | 259, 270, 491 |
| PagI | TCATGA | 1 cut(s) | 438 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| PfeI | GAWTC | 3 cut(s) | 283, 578, 583 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 758 |
| PkrI | GCNGC | 2 cut(s) | 202, 653 |
| PleI | GAGTC | 2 cut(s) | 377, 410 |
| PpsI | GAGTC | 2 cut(s) | 377, 410 |
| PshBI | ATTAAT | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 404, 736 |
| PspPI | GGNCC | 2 cut(s) | 452, 713 |
| PstNI | CAGNNNCTG | 1 cut(s) | 139 |
| PsuI | RGATCY | 1 cut(s) | 701 |
| RsaI | GTAC | 1 cut(s) | 325 |
| RsaNI | GTAC | 1 cut(s) | 324 |
| RseI | CAYNNNNRTG | 1 cut(s) | 727 |
| SaqAI | TTAA | 3 cut(s) | 44, 336, 369 |
| SatI | GCNGC | 2 cut(s) | 201, 652 |
| Sau3AI | GATC | 1 cut(s) | 701 |
| Sau96I | GGNCC | 2 cut(s) | 452, 713 |
| SchI | GAGTC | 2 cut(s) | 377, 410 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SduI | GDGCHC | 1 cut(s) | 405 |
| SfaNI | GCATC | 2 cut(s) | 40, 502 |
| SinI | GGWCC | 1 cut(s) | 713 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 727 |
| SmlI | CTYRAG | 2 cut(s) | 220, 483 |
| SmoI | CTYRAG | 2 cut(s) | 220, 483 |
| Sse9I | AATT | 2 cut(s) | 108, 155 |
| SsiI | CCGC | 5 cut(s) | 200, 292, 610, 651, 745 |
| SspI | AATATT | 1 cut(s) | 472 |
| SspMI | CTAG | 2 cut(s) | 105, 330 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| StyI | CCWWGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 1 cut(s) | 141 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 1 cut(s) | 581 |
| TasI | AATT | 2 cut(s) | 108, 155 |
| TauI | GCSGC | 2 cut(s) | 203, 654 |
| TfiI | GAWTC | 3 cut(s) | 283, 578, 583 |
| Tru1I | TTAA | 3 cut(s) | 44, 336, 369 |
| Tru9I | TTAA | 3 cut(s) | 44, 336, 369 |
| TscAI | CASTG | 2 cut(s) | 76, 192 |
| TseFI | GTSAC | 3 cut(s) | 259, 270, 491 |
| Tsp45I | GTSAC | 3 cut(s) | 259, 270, 491 |
| TspDTI | ATGAA | 2 cut(s) | 455, 680 |
| TspGWI | ACGGA | 1 cut(s) | 311 |
| TspRI | CASTG | 2 cut(s) | 76, 192 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 758 |
| VpaK11BI | GGWCC | 1 cut(s) | 713 |
| VspI | ATTAAT | 1 cut(s) | 369 |
| XapI | RAATTY | 1 cut(s) | 108 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |
| XspI | CTAG | 2 cut(s) | 105, 330 |