gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 100 | 4.6e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 275 |
| AciI | CCGC | 3 cut(s) | 316, 326, 383 |
| AclWI | GGATC | 2 cut(s) | 426, 439 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AcuI | CTGAAG | 2 cut(s) | 101, 144 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 237 |
| AgsI | TTSAA | 1 cut(s) | 167 |
| AluBI | AGCT | 4 cut(s) | 44, 94, 134, 279 |
| AluI | AGCT | 4 cut(s) | 44, 94, 134, 279 |
| AlwI | GGATC | 2 cut(s) | 426, 439 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 2 cut(s) | 398, 415 |
| ApaI | GGGCCC | 1 cut(s) | 419 |
| ApeKI | GCWGC | 2 cut(s) | 276, 350 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| AspLEI | GCGC | 2 cut(s) | 276, 393 |
| AspS9I | GGNCC | 2 cut(s) | 415, 416 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 1 cut(s) | 419 |
| BamHI | GGATCC | 1 cut(s) | 431 |
| BanII | GRGCYC | 2 cut(s) | 244, 419 |
| BbvI | GCAGC | 2 cut(s) | 288, 362 |
| BccI | CCATC | 3 cut(s) | 41, 94, 131 |
| BceAI | ACGGC | 1 cut(s) | 329 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 206, 240 |
| BciVI | GTATCC | 1 cut(s) | 168 |
| BfaI | CTAG | 3 cut(s) | 45, 113, 402 |
| BfoI | RGCGCY | 1 cut(s) | 394 |
| BfuI | GTATCC | 1 cut(s) | 168 |
| BisI | GCNGC | 5 cut(s) | 277, 317, 327, 351, 383 |
| BlsI | GCNGC | 5 cut(s) | 278, 318, 328, 352, 384 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 2 cut(s) | 415, 416 |
| BmiI | GGNNCC | 3 cut(s) | 71, 417, 433 |
| BmsI | GCATC | 1 cut(s) | 208 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BseRI | GAGGAG | 3 cut(s) | 62, 352, 355 |
| BseSI | GKGCMC | 1 cut(s) | 419 |
| BseXI | GCAGC | 2 cut(s) | 288, 362 |
| BshFI | GGCC | 2 cut(s) | 400, 417 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BsnI | GGCC | 2 cut(s) | 400, 417 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp120I | GGGCCC | 1 cut(s) | 415 |
| Bsp1286I | GDGCHC | 2 cut(s) | 244, 419 |
| Bsp143I | GATC | 1 cut(s) | 431 |
| BspACI | CCGC | 3 cut(s) | 316, 326, 383 |
| BspANI | GGCC | 2 cut(s) | 400, 417 |
| BspLI | GGNNCC | 3 cut(s) | 71, 417, 433 |
| BspPI | GGATC | 2 cut(s) | 426, 439 |
| BspQI | GCTCTTC | 1 cut(s) | 34 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| BssMI | GATC | 1 cut(s) | 431 |
| BssT1I | CCWWGG | 1 cut(s) | 395 |
| Bst4CI | ACNGT | 1 cut(s) | 373 |
| Bst6I | CTCTTC | 2 cut(s) | 34, 288 |
| BstC8I | GCNNGC | 2 cut(s) | 281, 355 |
| BstDEI | CTNAG | 1 cut(s) | 287 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 394 |
| BstHHI | GCGC | 2 cut(s) | 276, 393 |
| BstKTI | GATC | 1 cut(s) | 434 |
| BstMBI | GATC | 1 cut(s) | 431 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 280, 382, 388, 397 |
| BstSLI | GKGCMC | 1 cut(s) | 419 |
| BstV1I | GCAGC | 2 cut(s) | 288, 362 |
| BstX2I | RGATCY | 1 cut(s) | 431 |
| BstYI | RGATCY | 1 cut(s) | 431 |
| BsuI | GTATCC | 1 cut(s) | 168 |
| BsuRI | GGCC | 2 cut(s) | 400, 417 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 2 cut(s) | 281, 355 |
| CfoI | GCGC | 2 cut(s) | 276, 393 |
| Cfr13I | GGNCC | 2 cut(s) | 415, 416 |
| CviAII | CATG | 1 cut(s) | 188 |
| DdeI | CTNAG | 1 cut(s) | 287 |
| DpnI | GATC | 1 cut(s) | 433 |
| DpnII | GATC | 1 cut(s) | 431 |
| Eam1104I | CTCTTC | 2 cut(s) | 34, 288 |
| EarI | CTCTTC | 2 cut(s) | 34, 288 |
| Eco130I | CCWWGG | 1 cut(s) | 395 |
| Eco24I | GRGCYC | 2 cut(s) | 244, 419 |
| Eco57I | CTGAAG | 2 cut(s) | 101, 144 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoO109I | RGGNCCY | 1 cut(s) | 416 |
| EcoT14I | CCWWGG | 1 cut(s) | 395 |
| EcoT38I | GRGCYC | 2 cut(s) | 244, 419 |
| ErhI | CCWWGG | 1 cut(s) | 395 |
| FaeI | CATG | 1 cut(s) | 191 |
| FaiI | YATR | 4 cut(s) | 180, 189, 257, 309 |
| FatI | CATG | 1 cut(s) | 187 |
| Fnu4HI | GCNGC | 5 cut(s) | 277, 317, 327, 351, 383 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 2 cut(s) | 244, 419 |
| Fsp4HI | GCNGC | 5 cut(s) | 277, 317, 327, 351, 383 |
| FspBI | CTAG | 3 cut(s) | 45, 113, 402 |
| FspI | TGCGCA | 1 cut(s) | 275 |
| GlaI | GCGC | 2 cut(s) | 275, 392 |
| GluI | GCNGC | 5 cut(s) | 277, 317, 327, 351, 383 |
| HaeII | RGCGCY | 1 cut(s) | 394 |
| HaeIII | GGCC | 2 cut(s) | 400, 417 |
| HhaI | GCGC | 2 cut(s) | 276, 393 |
| Hin1II | CATG | 1 cut(s) | 191 |
| Hin6I | GCGC | 2 cut(s) | 274, 391 |
| HinP1I | GCGC | 2 cut(s) | 274, 391 |
| HinfI | GANTC | 2 cut(s) | 64, 141 |
| Hpy166II | GTNNAC | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 2 cut(s) | 38, 211 |
| Hpy188III | TCNNGA | 3 cut(s) | 61, 113, 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 200 |
| HpyAV | CCTTC | 2 cut(s) | 216, 429 |
| HpyCH4III | ACNGT | 1 cut(s) | 373 |
| HpyCH4V | TGCA | 1 cut(s) | 376 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 280, 382, 388, 397 |
| HpyF3I | CTNAG | 1 cut(s) | 287 |
| Hsp92II | CATG | 1 cut(s) | 191 |
| HspAI | GCGC | 2 cut(s) | 274, 391 |
| Kzo9I | GATC | 1 cut(s) | 431 |
| LguI | GCTCTTC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 75 |
| LpnPI | CCDG | 2 cut(s) | 92, 357 |
| Lsp1109I | GCAGC | 2 cut(s) | 288, 362 |
| LweI | GCATC | 1 cut(s) | 208 |
| MaeI | CTAG | 3 cut(s) | 45, 113, 402 |
| MalI | GATC | 1 cut(s) | 433 |
| MboI | GATC | 1 cut(s) | 431 |
| MboII | GAAGA | 9 cut(s) | 32, 51, 94, 137, 179, 185, 278, 305, 310 |
| MflI | RGATCY | 1 cut(s) | 431 |
| MhlI | GDGCHC | 2 cut(s) | 244, 419 |
| MluCI | AATT | 4 cut(s) | 23, 54, 234, 330 |
| MlyI | GAGTC | 2 cut(s) | 58, 135 |
| MnlI | CCTC | 8 cut(s) | 83, 109, 241, 261, 340, 373, 376, 421 |
| MseI | TTAA | 2 cut(s) | 8, 442 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 280, 382, 388, 397 |
| NdeII | GATC | 1 cut(s) | 431 |
| NlaIII | CATG | 1 cut(s) | 191 |
| NlaIV | GGNNCC | 3 cut(s) | 71, 417, 433 |
| NmeAIII | GCCGAG | 1 cut(s) | 46 |
| NsbI | TGCGCA | 1 cut(s) | 275 |
| PciSI | GCTCTTC | 1 cut(s) | 34 |
| PkrI | GCNGC | 5 cut(s) | 278, 318, 328, 352, 384 |
| PleI | GAGTC | 2 cut(s) | 58, 135 |
| PpsI | GAGTC | 2 cut(s) | 58, 135 |
| PspN4I | GGNNCC | 3 cut(s) | 71, 417, 433 |
| PspOMI | GGGCCC | 1 cut(s) | 415 |
| PspPI | GGNCC | 2 cut(s) | 415, 416 |
| PsuI | RGATCY | 1 cut(s) | 431 |
| SapI | GCTCTTC | 1 cut(s) | 34 |
| SaqAI | TTAA | 2 cut(s) | 8, 442 |
| SatI | GCNGC | 5 cut(s) | 277, 317, 327, 351, 383 |
| Sau3AI | GATC | 1 cut(s) | 431 |
| Sau96I | GGNCC | 2 cut(s) | 415, 416 |
| SchI | GAGTC | 2 cut(s) | 58, 135 |
| SduI | GDGCHC | 2 cut(s) | 244, 419 |
| SetI | ASST | 7 cut(s) | 46, 81, 96, 120, 136, 233, 281 |
| SfaNI | GCATC | 1 cut(s) | 208 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 4 cut(s) | 23, 54, 234, 330 |
| SsiI | CCGC | 3 cut(s) | 316, 326, 383 |
| SspMI | CTAG | 3 cut(s) | 45, 113, 402 |
| StyI | CCWWGG | 1 cut(s) | 395 |
| TaaI | ACNGT | 1 cut(s) | 373 |
| TaqI | TCGA | 2 cut(s) | 75, 244 |
| TasI | AATT | 4 cut(s) | 23, 54, 234, 330 |
| TauI | GCSGC | 3 cut(s) | 319, 329, 385 |
| Tru1I | TTAA | 2 cut(s) | 8, 442 |
| Tru9I | TTAA | 2 cut(s) | 8, 442 |
| TseI | GCWGC | 2 cut(s) | 276, 350 |
| TspDTI | ATGAA | 2 cut(s) | 33, 176 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XbaI | TCTAGA | 1 cut(s) | 112 |
| XspI | CTAG | 3 cut(s) | 45, 113, 402 |