GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 781 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 497 |
| Acc36I | ACCTGC | 1 cut(s) | 781 |
| AccB1I | GGYRCC | 1 cut(s) | 769 |
| AclWI | GGATC | 3 cut(s) | 240, 694, 787 |
| AcoI | YGGCCR | 1 cut(s) | 256 |
| AcsI | RAATTY | 2 cut(s) | 338, 527 |
| AcuI | CTGAAG | 1 cut(s) | 416 |
| AgsI | TTSAA | 2 cut(s) | 389, 824 |
| AjnI | CCWGG | 2 cut(s) | 228, 446 |
| AleI | CACNNNNGTG | 1 cut(s) | 38 |
| AluBI | AGCT | 4 cut(s) | 270, 586, 605, 827 |
| AluI | AGCT | 4 cut(s) | 270, 586, 605, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 559 |
| Alw26I | GTCTC | 1 cut(s) | 521 |
| AlwI | GGATC | 3 cut(s) | 240, 694, 787 |
| AoxI | GGCC | 1 cut(s) | 256 |
| ApeKI | GCWGC | 4 cut(s) | 344, 533, 605, 641 |
| ApoI | RAATTY | 2 cut(s) | 338, 527 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| BalI | TGGCCA | 1 cut(s) | 258 |
| BanI | GGYRCC | 1 cut(s) | 769 |
| Bbv12I | GWGCWC | 1 cut(s) | 559 |
| BbvCI | CCTCAGC | 1 cut(s) | 609 |
| BbvI | GCAGC | 4 cut(s) | 331, 520, 592, 628 |
| BccI | CCATC | 3 cut(s) | 134, 176, 545 |
| BciT130I | CCWGG | 2 cut(s) | 230, 448 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BclI | TGATCA | 1 cut(s) | 730 |
| BcoDI | GTCTC | 1 cut(s) | 521 |
| BfaI | CTAG | 3 cut(s) | 204, 458, 812 |
| BfmI | CTRYAG | 2 cut(s) | 311, 522 |
| BfuAI | ACCTGC | 1 cut(s) | 781 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BisI | GCNGC | 4 cut(s) | 345, 534, 606, 642 |
| BlsI | GCNGC | 4 cut(s) | 346, 535, 607, 643 |
| Bme1390I | CCNGG | 2 cut(s) | 230, 448 |
| BmiI | GGNNCC | 2 cut(s) | 738, 771 |
| BmrFI | CCNGG | 2 cut(s) | 230, 448 |
| BmsI | GCATC | 2 cut(s) | 442, 771 |
| Bpu10I | CCTNAGC | 2 cut(s) | 509, 609 |
| BsaI | GGTCTC | 1 cut(s) | 521 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 447 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 181, 211 |
| Bse1I | ACTGG | 1 cut(s) | 224 |
| BseBI | CCWGG | 2 cut(s) | 230, 448 |
| BseDI | CCNNGG | 2 cut(s) | 228, 447 |
| BseGI | GGATG | 2 cut(s) | 457, 711 |
| BseMII | CTCAG | 5 cut(s) | 124, 285, 572, 600, 791 |
| BseNI | ACTGG | 1 cut(s) | 224 |
| BseXI | GCAGC | 4 cut(s) | 331, 520, 592, 628 |
| BseYI | CCCAGC | 1 cut(s) | 750 |
| BsgI | GTGCAG | 2 cut(s) | 330, 717 |
| BshFI | GGCC | 1 cut(s) | 258 |
| BshNI | GGYRCC | 1 cut(s) | 769 |
| BsiHKAI | GWGCWC | 1 cut(s) | 559 |
| BslFI | GGGAC | 2 cut(s) | 129, 221 |
| BsmAI | GTCTC | 1 cut(s) | 521 |
| BsmFI | GGGAC | 2 cut(s) | 129, 221 |
| BsmI | GAATGC | 1 cut(s) | 784 |
| BsnI | GGCC | 1 cut(s) | 258 |
| Bso31I | GGTCTC | 1 cut(s) | 521 |
| Bsp1286I | GDGCHC | 1 cut(s) | 559 |
| Bsp143I | GATC | 4 cut(s) | 232, 686, 730, 792 |
| BspANI | GGCC | 1 cut(s) | 258 |
| BspCNI | CTCAG | 5 cut(s) | 123, 284, 571, 601, 790 |
| BspLI | GGNNCC | 2 cut(s) | 738, 771 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspMI | ACCTGC | 1 cut(s) | 781 |
| BspPI | GGATC | 3 cut(s) | 240, 694, 787 |
| BspT107I | GGYRCC | 1 cut(s) | 769 |
| BspTNI | GGTCTC | 1 cut(s) | 521 |
| BsrI | ACTGG | 1 cut(s) | 224 |
| BssECI | CCNNGG | 2 cut(s) | 228, 447 |
| BssMI | GATC | 4 cut(s) | 232, 686, 730, 792 |
| Bst2UI | CCWGG | 2 cut(s) | 230, 448 |
| Bst4CI | ACNGT | 6 cut(s) | 40, 315, 466, 505, 808, 820 |
| Bst6I | CTCTTC | 1 cut(s) | 600 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 530 |
| BstC8I | GCNNGC | 1 cut(s) | 768 |
| BstDEI | CTNAG | 8 cut(s) | 110, 266, 271, 509, 558, 578, 609, 777 |
| BstF5I | GGATG | 2 cut(s) | 457, 711 |
| BstKTI | GATC | 4 cut(s) | 235, 689, 733, 795 |
| BstMAI | GTCTC | 1 cut(s) | 521 |
| BstMBI | GATC | 4 cut(s) | 232, 686, 730, 792 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 530 |
| BstNI | CCWGG | 2 cut(s) | 230, 448 |
| BstSCI | CCNGG | 2 cut(s) | 228, 446 |
| BstSFI | CTRYAG | 2 cut(s) | 311, 522 |
| BstV1I | GCAGC | 4 cut(s) | 331, 520, 592, 628 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 258 |
| BtsCI | GGATG | 2 cut(s) | 457, 711 |
| BtsIMutI | CAGTG | 3 cut(s) | 36, 217, 501 |
| BveI | ACCTGC | 1 cut(s) | 781 |
| Cac8I | GCNNGC | 1 cut(s) | 768 |
| CviAII | CATG | 3 cut(s) | 84, 790, 835 |
| CviJI | RGCY | 8 cut(s) | 132, 258, 270, 586, 605, 737, 754, 827 |
| CviKI_1 | RGCY | 8 cut(s) | 132, 258, 270, 586, 605, 737, 754, 827 |
| DdeI | CTNAG | 8 cut(s) | 110, 266, 271, 509, 558, 578, 609, 777 |
| DpnI | GATC | 4 cut(s) | 234, 688, 732, 794 |
| DpnII | GATC | 4 cut(s) | 232, 686, 730, 792 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 497 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 497 |
| EaeI | YGGCCR | 1 cut(s) | 256 |
| Eam1104I | CTCTTC | 1 cut(s) | 600 |
| EarI | CTCTTC | 1 cut(s) | 600 |
| Eco31I | GGTCTC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 1 cut(s) | 416 |
| EcoRII | CCWGG | 2 cut(s) | 228, 446 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| FaeI | CATG | 3 cut(s) | 87, 793, 838 |
| FaqI | GGGAC | 2 cut(s) | 129, 221 |
| FatI | CATG | 3 cut(s) | 83, 789, 834 |
| FbaI | TGATCA | 1 cut(s) | 730 |
| Fnu4HI | GCNGC | 4 cut(s) | 345, 534, 606, 642 |
| FokI | GGATG | 2 cut(s) | 464, 698 |
| Fsp4HI | GCNGC | 4 cut(s) | 345, 534, 606, 642 |
| FspBI | CTAG | 3 cut(s) | 204, 458, 812 |
| GluI | GCNGC | 4 cut(s) | 345, 534, 606, 642 |
| GsaI | CCCAGC | 1 cut(s) | 754 |
| HaeIII | GGCC | 1 cut(s) | 258 |
| Hin1II | CATG | 3 cut(s) | 87, 793, 838 |
| HinfI | GANTC | 4 cut(s) | 68, 101, 550, 631 |
| Hpy188I | TCNGA | 4 cut(s) | 181, 396, 600, 780 |
| Hpy188III | TCNNGA | 3 cut(s) | 458, 652, 796 |
| HpyAV | CCTTC | 2 cut(s) | 210, 395 |
| HpyCH4III | ACNGT | 6 cut(s) | 40, 315, 466, 505, 808, 820 |
| HpyCH4IV | ACGT | 1 cut(s) | 546 |
| HpyCH4V | TGCA | 6 cut(s) | 83, 347, 524, 573, 698, 784 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 530 |
| HpyF3I | CTNAG | 8 cut(s) | 110, 266, 271, 509, 558, 578, 609, 777 |
| HpySE526I | ACGT | 1 cut(s) | 546 |
| Hsp92II | CATG | 3 cut(s) | 87, 793, 838 |
| Ksp22I | TGATCA | 1 cut(s) | 730 |
| Kzo9I | GATC | 4 cut(s) | 232, 686, 730, 792 |
| LmnI | GCTCC | 3 cut(s) | 649, 742, 832 |
| Lsp1109I | GCAGC | 4 cut(s) | 331, 520, 592, 628 |
| LweI | GCATC | 2 cut(s) | 442, 771 |
| MaeI | CTAG | 3 cut(s) | 204, 458, 812 |
| MaeII | ACGT | 1 cut(s) | 546 |
| MaeIII | GTNAC | 2 cut(s) | 472, 499 |
| MalI | GATC | 4 cut(s) | 234, 688, 732, 794 |
| MboI | GATC | 4 cut(s) | 232, 686, 730, 792 |
| MboII | GAAGA | 3 cut(s) | 409, 587, 833 |
| MhlI | GDGCHC | 1 cut(s) | 559 |
| MlsI | TGGCCA | 1 cut(s) | 258 |
| MluCI | AATT | 4 cut(s) | 73, 164, 338, 527 |
| MluNI | TGGCCA | 1 cut(s) | 258 |
| MlyI | GAGTC | 1 cut(s) | 640 |
| MmeI | TCCRAC | 2 cut(s) | 394, 405 |
| MnlI | CCTC | 4 cut(s) | 187, 481, 604, 841 |
| Mox20I | TGGCCA | 1 cut(s) | 258 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MscI | TGGCCA | 1 cut(s) | 258 |
| MseI | TTAA | 1 cut(s) | 588 |
| MslI | CAYNNNNRTG | 3 cut(s) | 38, 248, 656 |
| Msp20I | TGGCCA | 1 cut(s) | 258 |
| MspR9I | CCNGG | 2 cut(s) | 230, 448 |
| Mva1269I | GAATGC | 1 cut(s) | 784 |
| MvaI | CCWGG | 2 cut(s) | 230, 448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 530 |
| NdeII | GATC | 4 cut(s) | 232, 686, 730, 792 |
| NlaIII | CATG | 3 cut(s) | 87, 793, 838 |
| NlaIV | GGNNCC | 2 cut(s) | 738, 771 |
| NmuCI | GTSAC | 1 cut(s) | 499 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| OliI | CACNNNNGTG | 1 cut(s) | 38 |
| PaqCI | CACCTGC | 1 cut(s) | 781 |
| PctI | GAATGC | 1 cut(s) | 784 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 3 cut(s) | 68, 101, 550 |
| PkrI | GCNGC | 4 cut(s) | 346, 535, 607, 643 |
| PleI | GAGTC | 1 cut(s) | 639 |
| PpsI | GAGTC | 1 cut(s) | 639 |
| Psp6I | CCWGG | 2 cut(s) | 228, 446 |
| PspFI | CCCAGC | 1 cut(s) | 750 |
| PspGI | CCWGG | 2 cut(s) | 228, 446 |
| PspN4I | GGNNCC | 2 cut(s) | 738, 771 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| RseI | CAYNNNNRTG | 3 cut(s) | 38, 248, 656 |
| SaqAI | TTAA | 1 cut(s) | 588 |
| SatI | GCNGC | 4 cut(s) | 345, 534, 606, 642 |
| Sau3AI | GATC | 4 cut(s) | 232, 686, 730, 792 |
| SchI | GAGTC | 1 cut(s) | 640 |
| ScrFI | CCNGG | 2 cut(s) | 230, 448 |
| SduI | GDGCHC | 1 cut(s) | 559 |
| SfaNI | GCATC | 2 cut(s) | 442, 771 |
| SfcI | CTRYAG | 2 cut(s) | 311, 522 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 38, 248, 656 |
| Sse9I | AATT | 4 cut(s) | 73, 164, 338, 527 |
| SspMI | CTAG | 3 cut(s) | 204, 458, 812 |
| StyD4I | CCNGG | 2 cut(s) | 228, 446 |
| TaaI | ACNGT | 6 cut(s) | 40, 315, 466, 505, 808, 820 |
| TaiI | ACGT | 1 cut(s) | 549 |
| TasI | AATT | 4 cut(s) | 73, 164, 338, 527 |
| TfiI | GAWTC | 3 cut(s) | 68, 101, 550 |
| Tru1I | TTAA | 1 cut(s) | 588 |
| Tru9I | TTAA | 1 cut(s) | 588 |
| TscAI | CASTG | 3 cut(s) | 43, 224, 508 |
| TseFI | GTSAC | 1 cut(s) | 499 |
| TseI | GCWGC | 4 cut(s) | 344, 533, 605, 641 |
| Tsp45I | GTSAC | 1 cut(s) | 499 |
| TspDTI | ATGAA | 1 cut(s) | 81 |
| TspRI | CASTG | 3 cut(s) | 43, 224, 508 |
| XapI | RAATTY | 2 cut(s) | 338, 527 |
| XbaI | TCTAGA | 1 cut(s) | 457 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 3 cut(s) | 204, 458, 812 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |