gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 1 cut(s) | 780 |
| AccIII | TCCGGA | 1 cut(s) | 752 |
| AcoI | YGGCCR | 1 cut(s) | 723 |
| AcsI | RAATTY | 2 cut(s) | 329, 518 |
| AfaI | GTAC | 1 cut(s) | 676 |
| AgsI | TTSAA | 6 cut(s) | 88, 95, 106, 191, 473, 787 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 258 |
| AluBI | AGCT | 4 cut(s) | 91, 218, 599, 681 |
| AluI | AGCT | 4 cut(s) | 91, 218, 599, 681 |
| Alw26I | GTCTC | 1 cut(s) | 404 |
| Aor13HI | TCCGGA | 1 cut(s) | 752 |
| AoxI | GGCC | 3 cut(s) | 247, 723, 739 |
| ApeKI | GCWGC | 4 cut(s) | 335, 434, 524, 596 |
| ApoI | RAATTY | 2 cut(s) | 329, 518 |
| AseI | ATTAAT | 1 cut(s) | 734 |
| AspS9I | GGNCC | 3 cut(s) | 740, 750, 755 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| AvaII | GGWCC | 2 cut(s) | 750, 755 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 4 cut(s) | 322, 421, 536, 608 |
| BccI | CCATC | 3 cut(s) | 128, 170, 520 |
| BcoDI | GTCTC | 1 cut(s) | 404 |
| BfaI | CTAG | 3 cut(s) | 245, 438, 678 |
| BfmI | CTRYAG | 1 cut(s) | 456 |
| BglII | AGATCT | 1 cut(s) | 293 |
| BisI | GCNGC | 4 cut(s) | 336, 435, 525, 597 |
| BlsI | GCNGC | 4 cut(s) | 337, 436, 526, 598 |
| Bme18I | GGWCC | 2 cut(s) | 750, 755 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 258 |
| BmgT120I | GGNCC | 3 cut(s) | 740, 750, 755 |
| BmiI | GGNNCC | 4 cut(s) | 6, 699, 751, 757 |
| BmsI | GCATC | 1 cut(s) | 433 |
| BpuEI | CTTGAG | 4 cut(s) | 204, 285, 575, 749 |
| BsaJI | CCNNGG | 1 cut(s) | 567 |
| BsaWI | WCCGGW | 1 cut(s) | 752 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseAI | TCCGGA | 1 cut(s) | 752 |
| BseDI | CCNNGG | 1 cut(s) | 567 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 2 cut(s) | 26, 591 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseXI | GCAGC | 4 cut(s) | 322, 421, 536, 608 |
| BshFI | GGCC | 3 cut(s) | 249, 725, 741 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiSI | CCGG | 1 cut(s) | 753 |
| BsmAI | GTCTC | 1 cut(s) | 404 |
| BsnI | GGCC | 3 cut(s) | 249, 725, 741 |
| Bsp13I | TCCGGA | 1 cut(s) | 752 |
| Bsp143I | GATC | 3 cut(s) | 223, 293, 426 |
| Bsp19I | CCATGG | 1 cut(s) | 567 |
| BspANI | GGCC | 3 cut(s) | 249, 725, 741 |
| BspCNI | CTCAG | 2 cut(s) | 25, 592 |
| BspEI | TCCGGA | 1 cut(s) | 752 |
| BspLI | GGNNCC | 4 cut(s) | 6, 699, 751, 757 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssECI | CCNNGG | 1 cut(s) | 567 |
| BssMI | GATC | 3 cut(s) | 223, 293, 426 |
| BssNAI | GTATAC | 1 cut(s) | 781 |
| BssT1I | CCWWGG | 1 cut(s) | 567 |
| Bst1107I | GTATAC | 1 cut(s) | 781 |
| Bst4CI | ACNGT | 6 cut(s) | 34, 159, 457, 496, 538, 552 |
| BstDEI | CTNAG | 3 cut(s) | 12, 500, 600 |
| BstDSI | CCRYGG | 1 cut(s) | 567 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstKTI | GATC | 3 cut(s) | 226, 296, 429 |
| BstMAI | GTCTC | 1 cut(s) | 404 |
| BstMBI | GATC | 3 cut(s) | 223, 293, 426 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 88, 215, 443, 656 |
| BstSFI | CTRYAG | 1 cut(s) | 456 |
| BstV1I | GCAGC | 4 cut(s) | 322, 421, 536, 608 |
| BstX2I | RGATCY | 1 cut(s) | 293 |
| BstYI | RGATCY | 1 cut(s) | 293 |
| BstZ17I | GTATAC | 1 cut(s) | 781 |
| BsuRI | GGCC | 3 cut(s) | 249, 725, 741 |
| BtgI | CCRYGG | 1 cut(s) | 567 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| BtsI | GCAGTG | 2 cut(s) | 645, 726 |
| BtsIMutI | CAGTG | 4 cut(s) | 30, 492, 645, 726 |
| Cfr13I | GGNCC | 3 cut(s) | 740, 750, 755 |
| Csp6I | GTAC | 1 cut(s) | 675 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 290, 325 |
| CviAII | CATG | 1 cut(s) | 568 |
| CviQI | GTAC | 1 cut(s) | 675 |
| DdeI | CTNAG | 3 cut(s) | 12, 500, 600 |
| DpnI | GATC | 3 cut(s) | 225, 295, 428 |
| DpnII | GATC | 3 cut(s) | 223, 293, 426 |
| DriI | GACNNNNNGTC | 1 cut(s) | 258 |
| EaeI | YGGCCR | 1 cut(s) | 723 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 1 cut(s) | 567 |
| Eco47I | GGWCC | 2 cut(s) | 750, 755 |
| EcoT14I | CCWWGG | 1 cut(s) | 567 |
| EcoT22I | ATGCAT | 1 cut(s) | 448 |
| ErhI | CCWWGG | 1 cut(s) | 567 |
| FaeI | CATG | 1 cut(s) | 571 |
| FaiI | YATR | 8 cut(s) | 72, 121, 123, 204, 242, 569, 653, 781 |
| FatI | CATG | 1 cut(s) | 567 |
| FblI | GTMKAC | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 4 cut(s) | 336, 435, 525, 597 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 4 cut(s) | 336, 435, 525, 597 |
| FspBI | CTAG | 3 cut(s) | 245, 438, 678 |
| GluI | GCNGC | 4 cut(s) | 336, 435, 525, 597 |
| HaeIII | GGCC | 3 cut(s) | 249, 725, 741 |
| HapII | CCGG | 1 cut(s) | 753 |
| Hin1II | CATG | 1 cut(s) | 571 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 3 cut(s) | 62, 95, 191 |
| HpaII | CCGG | 1 cut(s) | 753 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 3 cut(s) | 37, 152, 781 |
| Hpy188I | TCNGA | 5 cut(s) | 15, 175, 228, 321, 517 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 302, 470, 753, 766 |
| Hpy8I | GTNNAC | 3 cut(s) | 37, 152, 781 |
| HpyAV | CCTTC | 2 cut(s) | 50, 739 |
| HpyCH4III | ACNGT | 6 cut(s) | 34, 159, 457, 496, 538, 552 |
| HpyCH4IV | ACGT | 1 cut(s) | 621 |
| HpyCH4V | TGCA | 5 cut(s) | 269, 361, 379, 446, 524 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 88, 215, 443, 656 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 500, 600 |
| HpySE526I | ACGT | 1 cut(s) | 621 |
| Hsp92II | CATG | 1 cut(s) | 571 |
| Kpn2I | TCCGGA | 1 cut(s) | 752 |
| Kzo9I | GATC | 3 cut(s) | 223, 293, 426 |
| LmnI | GCTCC | 2 cut(s) | 343, 569 |
| LpnPI | CCDG | 4 cut(s) | 263, 276, 657, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 322, 421, 536, 608 |
| LweI | GCATC | 1 cut(s) | 433 |
| MaeI | CTAG | 3 cut(s) | 245, 438, 678 |
| MaeII | ACGT | 1 cut(s) | 621 |
| MaeIII | GTNAC | 3 cut(s) | 163, 490, 794 |
| MalI | GATC | 3 cut(s) | 225, 295, 428 |
| MboI | GATC | 3 cut(s) | 223, 293, 426 |
| MboII | GAAGA | 2 cut(s) | 485, 491 |
| MflI | RGATCY | 1 cut(s) | 293 |
| MluCI | AATT | 4 cut(s) | 329, 518, 787, 831 |
| MnlI | CCTC | 1 cut(s) | 773 |
| Mph1103I | ATGCAT | 1 cut(s) | 448 |
| MroI | TCCGGA | 1 cut(s) | 752 |
| MseI | TTAA | 7 cut(s) | 257, 578, 734, 813, 819, 830, 835 |
| MslI | CAYNNNNRTG | 1 cut(s) | 650 |
| MspA1I | CMGCKG | 1 cut(s) | 599 |
| MspI | CCGG | 1 cut(s) | 753 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 88, 215, 443, 656 |
| NcoI | CCATGG | 1 cut(s) | 567 |
| NdeII | GATC | 3 cut(s) | 223, 293, 426 |
| NlaIII | CATG | 1 cut(s) | 571 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 699, 751, 757 |
| NmuCI | GTSAC | 2 cut(s) | 163, 490 |
| NsiI | ATGCAT | 1 cut(s) | 448 |
| PfeI | GAWTC | 3 cut(s) | 62, 95, 191 |
| PkrI | GCNGC | 4 cut(s) | 337, 436, 526, 598 |
| PshBI | ATTAAT | 1 cut(s) | 734 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 699, 751, 757 |
| PspPI | GGNCC | 3 cut(s) | 740, 750, 755 |
| PsuI | RGATCY | 1 cut(s) | 293 |
| PvuII | CAGCTG | 1 cut(s) | 599 |
| RsaI | GTAC | 1 cut(s) | 676 |
| RsaNI | GTAC | 1 cut(s) | 675 |
| RseI | CAYNNNNRTG | 1 cut(s) | 650 |
| SaqAI | TTAA | 7 cut(s) | 257, 578, 734, 813, 819, 830, 835 |
| SatI | GCNGC | 4 cut(s) | 336, 435, 525, 597 |
| Sau3AI | GATC | 3 cut(s) | 223, 293, 426 |
| Sau96I | GGNCC | 3 cut(s) | 740, 750, 755 |
| SfaNI | GCATC | 1 cut(s) | 433 |
| SfcI | CTRYAG | 1 cut(s) | 456 |
| SinI | GGWCC | 2 cut(s) | 750, 755 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 650 |
| SmlI | CTYRAG | 4 cut(s) | 219, 300, 590, 764 |
| SmoI | CTYRAG | 4 cut(s) | 219, 300, 590, 764 |
| Sse9I | AATT | 4 cut(s) | 329, 518, 787, 831 |
| SspI | AATATT | 2 cut(s) | 406, 817 |
| SspMI | CTAG | 3 cut(s) | 245, 438, 678 |
| StyI | CCWWGG | 1 cut(s) | 567 |
| TaaI | ACNGT | 6 cut(s) | 34, 159, 457, 496, 538, 552 |
| TaiI | ACGT | 1 cut(s) | 624 |
| TasI | AATT | 4 cut(s) | 329, 518, 787, 831 |
| TfiI | GAWTC | 3 cut(s) | 62, 95, 191 |
| Tru1I | TTAA | 7 cut(s) | 257, 578, 734, 813, 819, 830, 835 |
| Tru9I | TTAA | 7 cut(s) | 257, 578, 734, 813, 819, 830, 835 |
| TscAI | CASTG | 4 cut(s) | 37, 499, 652, 726 |
| TseFI | GTSAC | 2 cut(s) | 163, 490 |
| TseI | GCWGC | 4 cut(s) | 335, 434, 524, 596 |
| Tsp45I | GTSAC | 2 cut(s) | 163, 490 |
| TspDTI | ATGAA | 4 cut(s) | 75, 341, 492, 615 |
| TspRI | CASTG | 4 cut(s) | 37, 499, 652, 726 |
| VpaK11BI | GGWCC | 2 cut(s) | 750, 755 |
| VspI | ATTAAT | 1 cut(s) | 734 |
| XapI | RAATTY | 2 cut(s) | 329, 518 |
| XmiI | GTMKAC | 1 cut(s) | 780 |
| XspI | CTAG | 3 cut(s) | 245, 438, 678 |
| Zsp2I | ATGCAT | 1 cut(s) | 448 |