ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 61 - 225 | 7.7e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 98, 101, 488 |
| AclWI | GGATC | 4 cut(s) | 302, 332, 459, 636 |
| AcsI | RAATTY | 3 cut(s) | 368, 563, 595 |
| AcuI | CTGAAG | 3 cut(s) | 270, 425, 669 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 186, 624 |
| AflIII | ACRYGT | 1 cut(s) | 198 |
| AgsI | TTSAA | 2 cut(s) | 8, 333 |
| AjnI | CCWGG | 1 cut(s) | 465 |
| AluBI | AGCT | 5 cut(s) | 281, 386, 409, 445, 509 |
| AluI | AGCT | 5 cut(s) | 281, 386, 409, 445, 509 |
| Alw21I | GWGCWC | 1 cut(s) | 388 |
| Alw26I | GTCTC | 1 cut(s) | 18 |
| AlwI | GGATC | 4 cut(s) | 302, 332, 459, 636 |
| AoxI | GGCC | 2 cut(s) | 189, 632 |
| ApeKI | GCWGC | 3 cut(s) | 95, 409, 536 |
| ApoI | RAATTY | 3 cut(s) | 368, 563, 595 |
| AspLEI | GCGC | 1 cut(s) | 736 |
| AspS9I | GGNCC | 2 cut(s) | 189, 304 |
| AsuC2I | CCSGG | 1 cut(s) | 87 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| BanII | GRGCYC | 2 cut(s) | 388, 642 |
| BauI | CACGAG | 1 cut(s) | 373 |
| Bbv12I | GWGCWC | 1 cut(s) | 388 |
| BbvI | GCAGC | 3 cut(s) | 82, 396, 548 |
| BccI | CCATC | 1 cut(s) | 629 |
| BceAI | ACGGC | 2 cut(s) | 501, 622 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 525, 559 |
| BciT130I | CCWGG | 1 cut(s) | 467 |
| BcnI | CCSGG | 1 cut(s) | 87 |
| BcoDI | GTCTC | 1 cut(s) | 18 |
| BfaI | CTAG | 2 cut(s) | 500, 530 |
| BfoI | RGCGCY | 1 cut(s) | 737 |
| BisI | GCNGC | 5 cut(s) | 96, 99, 102, 410, 537 |
| BlsI | GCNGC | 5 cut(s) | 97, 100, 103, 411, 538 |
| Bme1390I | CCNGG | 2 cut(s) | 87, 467 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 2 cut(s) | 189, 304 |
| BmiI | GGNNCC | 1 cut(s) | 305 |
| BmrFI | CCNGG | 2 cut(s) | 87, 467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 749, 781 |
| Bpu10I | CCTNAGC | 2 cut(s) | 636, 707 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BpuMI | CCSGG | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 186, 624 |
| BseBI | CCWGG | 1 cut(s) | 467 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 186, 624 |
| BseMII | CTCAG | 5 cut(s) | 176, 367, 627, 721, 780 |
| BseXI | GCAGC | 3 cut(s) | 82, 396, 548 |
| BseYI | CCCAGC | 1 cut(s) | 277 |
| BshFI | GGCC | 2 cut(s) | 191, 634 |
| BsiHKAI | GWGCWC | 1 cut(s) | 388 |
| BsiSI | CCGG | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 317 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 186, 624 |
| BsmAI | GTCTC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 1 cut(s) | 317 |
| BsnI | GGCC | 2 cut(s) | 191, 634 |
| Bsp1286I | GDGCHC | 2 cut(s) | 388, 642 |
| Bsp143I | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| BspACI | CCGC | 3 cut(s) | 98, 101, 488 |
| BspANI | GGCC | 2 cut(s) | 191, 634 |
| BspCNI | CTCAG | 5 cut(s) | 177, 366, 628, 720, 779 |
| BspLI | GGNNCC | 1 cut(s) | 305 |
| BspPI | GGATC | 4 cut(s) | 302, 332, 459, 636 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| BssSI | CACGAG | 1 cut(s) | 373 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst2BI | CACGAG | 1 cut(s) | 373 |
| Bst2UI | CCWGG | 1 cut(s) | 467 |
| Bst4CI | ACNGT | 2 cut(s) | 159, 364 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 214, 246 |
| BstC8I | GCNNGC | 1 cut(s) | 414 |
| BstDEI | CTNAG | 6 cut(s) | 185, 353, 636, 674, 707, 766 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 622 |
| BstF5I | GGATG | 1 cut(s) | 174 |
| BstH2I | RGCGCY | 1 cut(s) | 737 |
| BstHHI | GCGC | 1 cut(s) | 736 |
| BstKTI | GATC | 6 cut(s) | 297, 327, 454, 631, 741, 808 |
| BstMAI | GTCTC | 1 cut(s) | 18 |
| BstMBI | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 101, 422, 667 |
| BstNI | CCWGG | 1 cut(s) | 467 |
| BstNSI | RCATGY | 1 cut(s) | 202 |
| BstSCI | CCNGG | 2 cut(s) | 85, 465 |
| BstV1I | GCAGC | 3 cut(s) | 82, 396, 548 |
| BsuRI | GGCC | 2 cut(s) | 191, 634 |
| BtsCI | GGATG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 1 cut(s) | 414 |
| CfoI | GCGC | 1 cut(s) | 736 |
| Cfr13I | GGNCC | 2 cut(s) | 189, 304 |
| CseI | GACGC | 1 cut(s) | 565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 225, 260 |
| CviAII | CATG | 1 cut(s) | 199 |
| DdeI | CTNAG | 6 cut(s) | 185, 353, 636, 674, 707, 766 |
| DpnI | GATC | 6 cut(s) | 296, 326, 453, 630, 740, 807 |
| DpnII | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 214, 246 |
| EarI | CTCTTC | 3 cut(s) | 3, 214, 246 |
| EciI | GGCGGA | 1 cut(s) | 503 |
| Ecl136II | GAGCTC | 1 cut(s) | 386 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco24I | GRGCYC | 2 cut(s) | 388, 642 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco53kI | GAGCTC | 1 cut(s) | 386 |
| Eco57I | CTGAAG | 3 cut(s) | 270, 425, 669 |
| EcoICRI | GAGCTC | 1 cut(s) | 386 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 622 |
| EcoO109I | RGGNCCY | 1 cut(s) | 189 |
| EcoRI | GAATTC | 2 cut(s) | 368, 595 |
| EcoRII | CCWGG | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT38I | GRGCYC | 2 cut(s) | 388, 642 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 202 |
| FaqI | GGGAC | 1 cut(s) | 317 |
| FatI | CATG | 1 cut(s) | 198 |
| FauNDI | CATATG | 1 cut(s) | 601 |
| Fnu4HI | GCNGC | 5 cut(s) | 96, 99, 102, 410, 537 |
| FokI | GGATG | 1 cut(s) | 161 |
| FriOI | GRGCYC | 2 cut(s) | 388, 642 |
| Fsp4HI | GCNGC | 5 cut(s) | 96, 99, 102, 410, 537 |
| FspBI | CTAG | 2 cut(s) | 500, 530 |
| GlaI | GCGC | 1 cut(s) | 735 |
| GluI | GCNGC | 5 cut(s) | 96, 99, 102, 410, 537 |
| GsaI | CCCAGC | 1 cut(s) | 281 |
| HaeII | RGCGCY | 1 cut(s) | 737 |
| HaeIII | GGCC | 2 cut(s) | 191, 634 |
| HapII | CCGG | 1 cut(s) | 87 |
| HgaI | GACGC | 1 cut(s) | 565 |
| HhaI | GCGC | 1 cut(s) | 736 |
| Hin1II | CATG | 1 cut(s) | 202 |
| Hin6I | GCGC | 1 cut(s) | 734 |
| HinP1I | GCGC | 1 cut(s) | 734 |
| HinfI | GANTC | 3 cut(s) | 11, 56, 557 |
| HpaII | CCGG | 1 cut(s) | 87 |
| Hpy166II | GTNNAC | 2 cut(s) | 233, 380 |
| Hpy188I | TCNGA | 6 cut(s) | 186, 196, 318, 356, 562, 594 |
| Hpy188III | TCNNGA | 2 cut(s) | 298, 373 |
| Hpy8I | GTNNAC | 2 cut(s) | 233, 380 |
| Hpy99I | CGWCG | 1 cut(s) | 487 |
| HpyAV | CCTTC | 2 cut(s) | 209, 260 |
| HpyCH4III | ACNGT | 2 cut(s) | 159, 364 |
| HpyCH4V | TGCA | 2 cut(s) | 425, 661 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 101, 422, 667 |
| HpyF3I | CTNAG | 6 cut(s) | 185, 353, 636, 674, 707, 766 |
| Hsp92II | CATG | 1 cut(s) | 202 |
| HspAI | GCGC | 1 cut(s) | 734 |
| Kzo9I | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| Lsp1109I | GCAGC | 3 cut(s) | 82, 396, 548 |
| MaeI | CTAG | 2 cut(s) | 500, 530 |
| MaeIII | GTNAC | 4 cut(s) | 33, 393, 476, 643 |
| MalI | GATC | 6 cut(s) | 296, 326, 453, 630, 740, 807 |
| MboI | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| MboII | GAAGA | 5 cut(s) | 20, 231, 263, 662, 810 |
| MfeI | CAATTG | 3 cut(s) | 134, 289, 656 |
| MhlI | GDGCHC | 2 cut(s) | 388, 642 |
| MluCI | AATT | 9 cut(s) | 134, 148, 239, 289, 328, 368, 563, 595, 656 |
| MlyI | GAGTC | 2 cut(s) | 20, 50 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MnlI | CCTC | 8 cut(s) | 54, 93, 180, 202, 294, 484, 628, 696 |
| MseI | TTAA | 1 cut(s) | 203 |
| MspI | CCGG | 1 cut(s) | 87 |
| MspR9I | CCNGG | 2 cut(s) | 87, 467 |
| MunI | CAATTG | 3 cut(s) | 134, 289, 656 |
| MvaI | CCWGG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 101, 422, 667 |
| NciI | CCSGG | 1 cut(s) | 87 |
| NdeI | CATATG | 1 cut(s) | 601 |
| NdeII | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| NlaIII | CATG | 1 cut(s) | 202 |
| NlaIV | GGNNCC | 1 cut(s) | 305 |
| NmuCI | GTSAC | 1 cut(s) | 33 |
| NspI | RCATGY | 1 cut(s) | 202 |
| PciI | ACATGT | 1 cut(s) | 198 |
| PfeI | GAWTC | 1 cut(s) | 557 |
| PfoI | TCCNGGA | 1 cut(s) | 85 |
| PkrI | GCNGC | 5 cut(s) | 97, 100, 103, 411, 538 |
| PleI | GAGTC | 2 cut(s) | 19, 50 |
| PpsI | GAGTC | 2 cut(s) | 19, 50 |
| PscI | ACATGT | 1 cut(s) | 198 |
| Psp124BI | GAGCTC | 1 cut(s) | 388 |
| Psp6I | CCWGG | 1 cut(s) | 465 |
| PspFI | CCCAGC | 1 cut(s) | 277 |
| PspGI | CCWGG | 1 cut(s) | 465 |
| PspN4I | GGNNCC | 1 cut(s) | 305 |
| PspPI | GGNCC | 2 cut(s) | 189, 304 |
| SacI | GAGCTC | 1 cut(s) | 388 |
| SaqAI | TTAA | 1 cut(s) | 203 |
| SatI | GCNGC | 5 cut(s) | 96, 99, 102, 410, 537 |
| Sau3AI | GATC | 6 cut(s) | 294, 324, 451, 628, 738, 805 |
| Sau96I | GGNCC | 2 cut(s) | 189, 304 |
| SchI | GAGTC | 2 cut(s) | 20, 50 |
| ScrFI | CCNGG | 2 cut(s) | 87, 467 |
| SduI | GDGCHC | 2 cut(s) | 388, 642 |
| SinI | GGWCC | 1 cut(s) | 304 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 9 cut(s) | 134, 148, 239, 289, 328, 368, 563, 595, 656 |
| SsiI | CCGC | 3 cut(s) | 98, 101, 488 |
| SspMI | CTAG | 2 cut(s) | 500, 530 |
| SstI | GAGCTC | 1 cut(s) | 388 |
| StyD4I | CCNGG | 2 cut(s) | 85, 465 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 2 cut(s) | 159, 364 |
| TaqI | TCGA | 1 cut(s) | 482 |
| TasI | AATT | 9 cut(s) | 134, 148, 239, 289, 328, 368, 563, 595, 656 |
| TauI | GCSGC | 2 cut(s) | 101, 104 |
| TfiI | GAWTC | 1 cut(s) | 557 |
| Tru1I | TTAA | 1 cut(s) | 203 |
| Tru9I | TTAA | 1 cut(s) | 203 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseFI | GTSAC | 1 cut(s) | 33 |
| TseI | GCWGC | 3 cut(s) | 95, 409, 536 |
| Tsp45I | GTSAC | 1 cut(s) | 33 |
| TspDTI | ATGAA | 2 cut(s) | 163, 588 |
| TspRI | CASTG | 1 cut(s) | 369 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 622 |
| XapI | RAATTY | 3 cut(s) | 368, 563, 595 |
| XceI | RCATGY | 1 cut(s) | 202 |
| XspI | CTAG | 2 cut(s) | 500, 530 |