GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 4 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AgsI | TTSAA | 2 cut(s) | 10, 37 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 248 |
| BccI | CCATC | 2 cut(s) | 118, 184 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciVI | GTATCC | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 231 |
| BfoI | RGCGCY | 1 cut(s) | 153 |
| BfuI | GTATCC | 1 cut(s) | 208 |
| BpuEI | CTTGAG | 1 cut(s) | 78 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 91, 121 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BsgI | GTGCAG | 1 cut(s) | 99 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BsiSI | CCGG | 1 cut(s) | 147 |
| BsnI | GGCC | 1 cut(s) | 194 |
| Bsp143I | GATC | 1 cut(s) | 247 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssMI | GATC | 1 cut(s) | 247 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| BstC8I | GCNNGC | 1 cut(s) | 29 |
| BstH2I | RGCGCY | 1 cut(s) | 153 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 1 cut(s) | 250 |
| BstMBI | GATC | 1 cut(s) | 247 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 31 |
| BsuI | GTATCC | 1 cut(s) | 208 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 2 cut(s) | 222, 250 |
| Cac8I | GCNNGC | 1 cut(s) | 29 |
| CfoI | GCGC | 1 cut(s) | 152 |
| CviAII | CATG | 3 cut(s) | 28, 55, 163 |
| CviJI | RGCY | 4 cut(s) | 83, 92, 136, 194 |
| CviKI_1 | RGCY | 4 cut(s) | 83, 92, 136, 194 |
| DpnI | GATC | 1 cut(s) | 249 |
| DpnII | GATC | 1 cut(s) | 247 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 33 |
| FaeI | CATG | 3 cut(s) | 31, 58, 166 |
| FaiI | YATR | 5 cut(s) | 29, 56, 86, 164, 210 |
| FatI | CATG | 3 cut(s) | 27, 54, 162 |
| FspBI | CTAG | 1 cut(s) | 231 |
| GlaI | GCGC | 1 cut(s) | 151 |
| HaeII | RGCGCY | 1 cut(s) | 153 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| HapII | CCGG | 1 cut(s) | 147 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1II | CATG | 3 cut(s) | 31, 58, 166 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HpaII | CCGG | 1 cut(s) | 147 |
| HphI | GGTGA | 1 cut(s) | 248 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 140 |
| HpyAV | CCTTC | 1 cut(s) | 233 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 2 cut(s) | 31, 116 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| Hsp92II | CATG | 3 cut(s) | 31, 58, 166 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 1 cut(s) | 247 |
| LpnPI | CCDG | 6 cut(s) | 9, 36, 90, 118, 160, 210 |
| MaeI | CTAG | 1 cut(s) | 231 |
| MaeIII | GTNAC | 2 cut(s) | 97, 220 |
| MalI | GATC | 1 cut(s) | 249 |
| MboI | GATC | 1 cut(s) | 247 |
| MboII | GAAGA | 2 cut(s) | 57, 176 |
| MluCI | AATT | 1 cut(s) | 4 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 58, 178, 216 |
| Mph1103I | ATGCAT | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 1 cut(s) | 36 |
| MspI | CCGG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NdeII | GATC | 1 cut(s) | 247 |
| NlaIII | CATG | 3 cut(s) | 31, 58, 166 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| NsiI | ATGCAT | 1 cut(s) | 33 |
| NspI | RCATGY | 1 cut(s) | 31 |
| PaeI | GCATGC | 1 cut(s) | 31 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| RseI | CAYNNNNRTG | 1 cut(s) | 36 |
| Sau3AI | GATC | 1 cut(s) | 247 |
| SchI | GAGTC | 1 cut(s) | 137 |
| SetI | ASST | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 36 |
| SmlI | CTYRAG | 1 cut(s) | 93 |
| SmoI | CTYRAG | 1 cut(s) | 93 |
| SphI | GCATGC | 1 cut(s) | 31 |
| Sse9I | AATT | 1 cut(s) | 4 |
| SspMI | CTAG | 1 cut(s) | 231 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TasI | AATT | 1 cut(s) | 4 |
| TscAI | CASTG | 1 cut(s) | 229 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 227 |
| TspRI | CASTG | 1 cut(s) | 229 |
| XapI | RAATTY | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 31 |
| XspI | CTAG | 1 cut(s) | 231 |
| Zsp2I | ATGCAT | 1 cut(s) | 33 |