transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 13 - 92 | 1.1e-09 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfaI | GTAC | 2 cut(s) | 68, 196 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 514 |
| AgsI | TTSAA | 2 cut(s) | 182, 248 |
| Alw21I | GWGCWC | 1 cut(s) | 300 |
| AoxI | GGCC | 2 cut(s) | 431, 517 |
| AseI | ATTAAT | 1 cut(s) | 401 |
| AspLEI | GCGC | 1 cut(s) | 485 |
| AspS9I | GGNCC | 2 cut(s) | 431, 517 |
| AsuHPI | GGTGA | 3 cut(s) | 157, 245, 382 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 295, 328 |
| Bbv12I | GWGCWC | 1 cut(s) | 300 |
| BccI | CCATC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 2 cut(s) | 431, 517 |
| BpuEI | CTTGAG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 1 cut(s) | 14 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseRI | GAGGAG | 1 cut(s) | 159 |
| BshFI | GGCC | 2 cut(s) | 433, 519 |
| BsiHKAI | GWGCWC | 1 cut(s) | 300 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BsnI | GGCC | 2 cut(s) | 433, 519 |
| Bsp1286I | GDGCHC | 1 cut(s) | 300 |
| Bsp19I | CCATGG | 1 cut(s) | 141 |
| BspACI | CCGC | 1 cut(s) | 328 |
| BspANI | GGCC | 2 cut(s) | 433, 519 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 308 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 14 |
| BstHHI | GCGC | 1 cut(s) | 485 |
| BsuRI | GGCC | 2 cut(s) | 433, 519 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| BtsCI | GGATG | 1 cut(s) | 14 |
| BtsIMutI | CAGTG | 1 cut(s) | 304 |
| CfoI | GCGC | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 2 cut(s) | 431, 517 |
| Csp6I | GTAC | 2 cut(s) | 67, 195 |
| CviAII | CATG | 3 cut(s) | 81, 142, 350 |
| CviJI | RGCY | 2 cut(s) | 433, 519 |
| CviKI_1 | RGCY | 2 cut(s) | 433, 519 |
| CviQI | GTAC | 2 cut(s) | 67, 195 |
| DraI | TTTAAA | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 3 cut(s) | 84, 145, 353 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 365, 397 |
| FatI | CATG | 3 cut(s) | 80, 141, 349 |
| FauI | CCCGC | 1 cut(s) | 335 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| FokI | GGATG | 1 cut(s) | 21 |
| GlaI | GCGC | 1 cut(s) | 484 |
| HaeIII | GGCC | 2 cut(s) | 433, 519 |
| HhaI | GCGC | 1 cut(s) | 485 |
| Hin1II | CATG | 3 cut(s) | 84, 145, 353 |
| Hin6I | GCGC | 1 cut(s) | 483 |
| HinP1I | GCGC | 1 cut(s) | 483 |
| HincII | GTYRAC | 1 cut(s) | 208 |
| HindII | GTYRAC | 1 cut(s) | 208 |
| HphI | GGTGA | 3 cut(s) | 157, 245, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 208 |
| Hpy188I | TCNGA | 2 cut(s) | 109, 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 278 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 208 |
| Hpy99I | CGWCG | 1 cut(s) | 461 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 308 |
| HpyCH4V | TGCA | 2 cut(s) | 97, 497 |
| Hsp92II | CATG | 3 cut(s) | 84, 145, 353 |
| HspAI | GCGC | 1 cut(s) | 483 |
| LmnI | GCTCC | 1 cut(s) | 358 |
| LpnPI | CCDG | 1 cut(s) | 17 |
| MaeIII | GTNAC | 1 cut(s) | 527 |
| MboII | GAAGA | 1 cut(s) | 333 |
| MhlI | GDGCHC | 1 cut(s) | 300 |
| MluCI | AATT | 4 cut(s) | 214, 224, 361, 402 |
| MmeI | TCCRAC | 1 cut(s) | 436 |
| MnlI | CCTC | 4 cut(s) | 180, 266, 285, 428 |
| MseI | TTAA | 4 cut(s) | 20, 126, 360, 401 |
| NcoI | CCATGG | 1 cut(s) | 141 |
| NlaIII | CATG | 3 cut(s) | 84, 145, 353 |
| NmeAIII | GCCGAG | 1 cut(s) | 319 |
| PshBI | ATTAAT | 1 cut(s) | 401 |
| PspPI | GGNCC | 2 cut(s) | 431, 517 |
| RsaI | GTAC | 2 cut(s) | 68, 196 |
| RsaNI | GTAC | 2 cut(s) | 67, 195 |
| SaqAI | TTAA | 4 cut(s) | 20, 126, 360, 401 |
| Sau96I | GGNCC | 2 cut(s) | 431, 517 |
| SduI | GDGCHC | 1 cut(s) | 300 |
| SetI | ASST | 6 cut(s) | 244, 258, 277, 335, 420, 490 |
| SmlI | CTYRAG | 1 cut(s) | 276 |
| SmoI | CTYRAG | 1 cut(s) | 276 |
| Sse9I | AATT | 4 cut(s) | 214, 224, 361, 402 |
| SsiI | CCGC | 1 cut(s) | 328 |
| SspI | AATATT | 1 cut(s) | 154 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 2 cut(s) | 238, 308 |
| TasI | AATT | 4 cut(s) | 214, 224, 361, 402 |
| TatI | WGTACW | 1 cut(s) | 66 |
| Tru1I | TTAA | 4 cut(s) | 20, 126, 360, 401 |
| Tru9I | TTAA | 4 cut(s) | 20, 126, 360, 401 |
| TscAI | CASTG | 1 cut(s) | 311 |
| TspDTI | ATGAA | 2 cut(s) | 110, 149 |
| TspRI | CASTG | 1 cut(s) | 311 |
| VspI | ATTAAT | 1 cut(s) | 401 |
| XmiI | GTMKAC | 1 cut(s) | 13 |