Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 42 - 182 | 7.2e-23 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 317 |
| AcsI | RAATTY | 4 cut(s) | 286, 293, 557, 639 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 79 |
| AgsI | TTSAA | 6 cut(s) | 12, 110, 246, 376, 557, 562 |
| AluBI | AGCT | 5 cut(s) | 146, 174, 209, 404, 572 |
| AluI | AGCT | 5 cut(s) | 146, 174, 209, 404, 572 |
| Alw26I | GTCTC | 1 cut(s) | 44 |
| AoxI | GGCC | 1 cut(s) | 101 |
| ApeKI | GCWGC | 3 cut(s) | 160, 398, 401 |
| ApoI | RAATTY | 4 cut(s) | 286, 293, 557, 639 |
| AsuHPI | GGTGA | 2 cut(s) | 118, 623 |
| BbvCI | CCTCAGC | 1 cut(s) | 210 |
| BbvI | GCAGC | 3 cut(s) | 147, 385, 413 |
| BclI | TGATCA | 1 cut(s) | 421 |
| BcoDI | GTCTC | 1 cut(s) | 44 |
| BfaI | CTAG | 2 cut(s) | 459, 477 |
| BfmI | CTRYAG | 3 cut(s) | 16, 318, 399 |
| BisI | GCNGC | 3 cut(s) | 161, 399, 402 |
| BlsI | GCNGC | 3 cut(s) | 162, 400, 403 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| BsaBI | GATNNNNATC | 1 cut(s) | 376 |
| BsaJI | CCNNGG | 1 cut(s) | 62 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 79 |
| Bse3DI | GCAATG | 1 cut(s) | 420 |
| Bse8I | GATNNNNATC | 1 cut(s) | 376 |
| BseDI | CCNNGG | 1 cut(s) | 62 |
| BseGI | GGATG | 1 cut(s) | 137 |
| BseJI | GATNNNNATC | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BseMI | GCAATG | 1 cut(s) | 420 |
| BseMII | CTCAG | 4 cut(s) | 201, 219, 357, 534 |
| BseXI | GCAGC | 3 cut(s) | 147, 385, 413 |
| BshFI | GGCC | 1 cut(s) | 103 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BsmAI | GTCTC | 1 cut(s) | 44 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsnI | GGCC | 1 cut(s) | 103 |
| Bsp143I | GATC | 1 cut(s) | 421 |
| Bsp19I | CCATGG | 1 cut(s) | 62 |
| BspANI | GGCC | 1 cut(s) | 103 |
| BspCNI | CTCAG | 4 cut(s) | 202, 218, 356, 535 |
| BspMAI | CTGCAG | 1 cut(s) | 403 |
| BsrDI | GCAATG | 1 cut(s) | 420 |
| BssECI | CCNNGG | 1 cut(s) | 62 |
| BssMI | GATC | 1 cut(s) | 421 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 2 cut(s) | 28, 322 |
| BstDEI | CTNAG | 4 cut(s) | 205, 210, 343, 543 |
| BstDSI | CCRYGG | 1 cut(s) | 62 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 1 cut(s) | 137 |
| BstKTI | GATC | 1 cut(s) | 424 |
| BstMAI | GTCTC | 1 cut(s) | 44 |
| BstMBI | GATC | 1 cut(s) | 421 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 410 |
| BstSFI | CTRYAG | 3 cut(s) | 16, 318, 399 |
| BstV1I | GCAGC | 3 cut(s) | 147, 385, 413 |
| BsuRI | GGCC | 1 cut(s) | 103 |
| BtgI | CCRYGG | 1 cut(s) | 62 |
| BtsCI | GGATG | 1 cut(s) | 137 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CviAII | CATG | 3 cut(s) | 63, 99, 299 |
| DdeI | CTNAG | 4 cut(s) | 205, 210, 343, 543 |
| DpnI | GATC | 1 cut(s) | 423 |
| DpnII | GATC | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 77 |
| EcoRI | GAATTC | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 3 cut(s) | 66, 102, 302 |
| FatI | CATG | 3 cut(s) | 62, 98, 298 |
| FbaI | TGATCA | 1 cut(s) | 421 |
| FblI | GTMKAC | 1 cut(s) | 317 |
| Fnu4HI | GCNGC | 3 cut(s) | 161, 399, 402 |
| FokI | GGATG | 1 cut(s) | 124 |
| Fsp4HI | GCNGC | 3 cut(s) | 161, 399, 402 |
| FspBI | CTAG | 2 cut(s) | 459, 477 |
| GluI | GCNGC | 3 cut(s) | 161, 399, 402 |
| HaeIII | GGCC | 1 cut(s) | 103 |
| Hin1II | CATG | 3 cut(s) | 66, 102, 302 |
| HindIII | AAGCTT | 2 cut(s) | 144, 570 |
| HinfI | GANTC | 2 cut(s) | 347, 372 |
| HphI | GGTGA | 2 cut(s) | 118, 623 |
| Hpy166II | GTNNAC | 1 cut(s) | 318 |
| Hpy188I | TCNGA | 5 cut(s) | 142, 292, 346, 491, 647 |
| Hpy188III | TCNNGA | 2 cut(s) | 41, 425 |
| Hpy8I | GTNNAC | 1 cut(s) | 318 |
| HpyAV | CCTTC | 1 cut(s) | 99 |
| HpyCH4III | ACNGT | 2 cut(s) | 28, 322 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 163, 325, 401, 413 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 410 |
| HpyF3I | CTNAG | 4 cut(s) | 205, 210, 343, 543 |
| Hsp92II | CATG | 3 cut(s) | 66, 102, 302 |
| Ksp22I | TGATCA | 1 cut(s) | 421 |
| Kzo9I | GATC | 1 cut(s) | 421 |
| LpnPI | CCDG | 4 cut(s) | 65, 117, 390, 435 |
| Lsp1109I | GCAGC | 3 cut(s) | 147, 385, 413 |
| MaeI | CTAG | 2 cut(s) | 459, 477 |
| MaeIII | GTNAC | 1 cut(s) | 301 |
| MalI | GATC | 1 cut(s) | 423 |
| MboI | GATC | 1 cut(s) | 421 |
| MluCI | AATT | 7 cut(s) | 133, 228, 286, 293, 392, 557, 639 |
| MnlI | CCTC | 6 cut(s) | 69, 130, 205, 244, 508, 597 |
| MseI | TTAA | 2 cut(s) | 311, 623 |
| MspA1I | CMGCKG | 2 cut(s) | 209, 404 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 410 |
| NcoI | CCATGG | 1 cut(s) | 62 |
| NdeII | GATC | 1 cut(s) | 421 |
| NlaIII | CATG | 3 cut(s) | 66, 102, 302 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 347, 372 |
| PkrI | GCNGC | 3 cut(s) | 162, 400, 403 |
| PstI | CTGCAG | 1 cut(s) | 403 |
| PvuII | CAGCTG | 2 cut(s) | 209, 404 |
| SaqAI | TTAA | 2 cut(s) | 311, 623 |
| SatI | GCNGC | 3 cut(s) | 161, 399, 402 |
| Sau3AI | GATC | 1 cut(s) | 421 |
| SetI | ASST | 9 cut(s) | 17, 91, 148, 176, 211, 255, 406, 527, 574 |
| SfcI | CTRYAG | 3 cut(s) | 16, 318, 399 |
| Sse9I | AATT | 7 cut(s) | 133, 228, 286, 293, 392, 557, 639 |
| SspMI | CTAG | 2 cut(s) | 459, 477 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaaI | ACNGT | 2 cut(s) | 28, 322 |
| TaqI | TCGA | 2 cut(s) | 42, 350 |
| TasI | AATT | 7 cut(s) | 133, 228, 286, 293, 392, 557, 639 |
| TfiI | GAWTC | 2 cut(s) | 347, 372 |
| Tru1I | TTAA | 2 cut(s) | 311, 623 |
| Tru9I | TTAA | 2 cut(s) | 311, 623 |
| TscAI | CASTG | 1 cut(s) | 327 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| TseI | GCWGC | 3 cut(s) | 160, 398, 401 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 5 cut(s) | 60, 126, 165, 287, 431 |
| TspRI | CASTG | 1 cut(s) | 327 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 77 |
| XapI | RAATTY | 4 cut(s) | 286, 293, 557, 639 |
| XmiI | GTMKAC | 1 cut(s) | 317 |
| XspI | CTAG | 2 cut(s) | 459, 477 |