Mitochondrial protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 577 |
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 245, 579 |
| AccI | GTMKAC | 1 cut(s) | 442 |
| AciI | CCGC | 1 cut(s) | 525 |
| AclWI | GGATC | 2 cut(s) | 307, 704 |
| AcoI | YGGCCR | 1 cut(s) | 722 |
| AcvI | CACGTG | 1 cut(s) | 579 |
| AdeI | CACNNNGTG | 2 cut(s) | 245, 579 |
| AfaI | GTAC | 3 cut(s) | 507, 564, 658 |
| AfeI | AGCGCT | 1 cut(s) | 11 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 81, 245, 248, 362, 383, 405, 579 |
| AflIII | ACRYGT | 1 cut(s) | 502 |
| AgsI | TTSAA | 2 cut(s) | 412, 428 |
| AjiI | CACGTC | 1 cut(s) | 503 |
| AjnI | CCWGG | 2 cut(s) | 178, 361 |
| AluBI | AGCT | 4 cut(s) | 70, 461, 543, 631 |
| AluI | AGCT | 4 cut(s) | 70, 461, 543, 631 |
| Alw21I | GWGCWC | 1 cut(s) | 556 |
| Alw26I | GTCTC | 2 cut(s) | 90, 524 |
| AlwI | GGATC | 2 cut(s) | 307, 704 |
| Ama87I | CYCGRG | 2 cut(s) | 291, 592 |
| Aor51HI | AGCGCT | 1 cut(s) | 11 |
| AoxI | GGCC | 1 cut(s) | 722 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| AspLEI | GCGC | 1 cut(s) | 12 |
| AspS9I | GGNCC | 1 cut(s) | 374 |
| AsuC2I | CCSGG | 1 cut(s) | 384 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 194 |
| AvaI | CYCGRG | 2 cut(s) | 291, 592 |
| AvaII | GGWCC | 1 cut(s) | 374 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 489, 521 |
| BauI | CACGAG | 4 cut(s) | 213, 243, 315, 549 |
| BbrPI | CACGTG | 1 cut(s) | 579 |
| BbsI | GAAGAC | 2 cut(s) | 108, 383 |
| Bbv12I | GWGCWC | 1 cut(s) | 556 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BccI | CCATC | 4 cut(s) | 98, 360, 403, 674 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 578, 612 |
| BciT130I | CCWGG | 2 cut(s) | 180, 363 |
| BclI | TGATCA | 3 cut(s) | 64, 217, 661 |
| BcnI | CCSGG | 1 cut(s) | 384 |
| BcoDI | GTCTC | 2 cut(s) | 90, 524 |
| BfaI | CTAG | 1 cut(s) | 516 |
| BfoI | RGCGCY | 1 cut(s) | 13 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| Bme1390I | CCNGG | 3 cut(s) | 180, 363, 384 |
| Bme18I | GGWCC | 1 cut(s) | 374 |
| BmeT110I | CYCGRG | 2 cut(s) | 291, 592 |
| BmgBI | CACGTC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 374 |
| BmiI | GGNNCC | 1 cut(s) | 375 |
| BmrFI | CCNGG | 3 cut(s) | 180, 363, 384 |
| BmsI | GCATC | 1 cut(s) | 610 |
| BpiI | GAAGAC | 2 cut(s) | 108, 383 |
| BpuMI | CCSGG | 1 cut(s) | 384 |
| BsaAI | YACGTR | 1 cut(s) | 579 |
| BsaI | GGTCTC | 1 cut(s) | 90 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 81, 245, 248, 362, 383, 405, 579 |
| BseBI | CCWGG | 2 cut(s) | 180, 363 |
| BseGI | GGATG | 2 cut(s) | 352, 395 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 81, 245, 248, 362, 383, 405, 579 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseX3I | CGGCCG | 1 cut(s) | 722 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BseYI | CCCAGC | 1 cut(s) | 627 |
| Bsh1285I | CGRYCG | 2 cut(s) | 406, 725 |
| BshFI | GGCC | 1 cut(s) | 724 |
| BsiEI | CGRYCG | 2 cut(s) | 406, 725 |
| BsiHKAI | GWGCWC | 1 cut(s) | 556 |
| BsiHKCI | CYCGRG | 2 cut(s) | 291, 592 |
| BsiSI | CCGG | 3 cut(s) | 384, 721, 725 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 81, 245, 248, 362, 383, 405, 579 |
| BsmAI | GTCTC | 2 cut(s) | 90, 524 |
| BsmI | GAATGC | 1 cut(s) | 490 |
| BsnI | GGCC | 1 cut(s) | 724 |
| Bso31I | GGTCTC | 1 cut(s) | 90 |
| BsoBI | CYCGRG | 2 cut(s) | 291, 592 |
| Bsp1286I | GDGCHC | 1 cut(s) | 556 |
| Bsp143I | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| BspACI | CCGC | 1 cut(s) | 525 |
| BspANI | GGCC | 1 cut(s) | 724 |
| BspCNI | CTCAG | 1 cut(s) | 470 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 1 cut(s) | 375 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 2 cut(s) | 307, 704 |
| BspQI | GCTCTTC | 2 cut(s) | 343, 550 |
| BspTNI | GGTCTC | 1 cut(s) | 90 |
| BssMI | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| BssSI | CACGAG | 4 cut(s) | 213, 243, 315, 549 |
| Bst2BI | CACGAG | 4 cut(s) | 213, 243, 315, 549 |
| Bst2UI | CCWGG | 2 cut(s) | 180, 363 |
| Bst4CI | ACNGT | 2 cut(s) | 447, 470 |
| Bst6I | CTCTTC | 3 cut(s) | 180, 343, 550 |
| BstBAI | YACGTR | 1 cut(s) | 579 |
| BstC8I | GCNNGC | 1 cut(s) | 72 |
| BstDEI | CTNAG | 3 cut(s) | 106, 143, 457 |
| BstF5I | GGATG | 2 cut(s) | 352, 395 |
| BstH2I | RGCGCY | 1 cut(s) | 13 |
| BstHHI | GCGC | 1 cut(s) | 12 |
| BstKTI | GATC | 7 cut(s) | 22, 67, 220, 302, 406, 664, 712 |
| BstMAI | GTCTC | 2 cut(s) | 90, 524 |
| BstMBI | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| BstMCI | CGRYCG | 2 cut(s) | 406, 725 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 206, 533 |
| BstNI | CCWGG | 2 cut(s) | 180, 363 |
| BstSCI | CCNGG | 3 cut(s) | 178, 361, 382 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| BstV2I | GAAGAC | 2 cut(s) | 108, 383 |
| BstX2I | RGATCY | 2 cut(s) | 299, 709 |
| BstYI | RGATCY | 2 cut(s) | 299, 709 |
| BstZI | CGGCCG | 1 cut(s) | 722 |
| BsuRI | GGCC | 1 cut(s) | 724 |
| BtrI | CACGTC | 1 cut(s) | 503 |
| BtsCI | GGATG | 2 cut(s) | 352, 395 |
| BtsI | GCAGTG | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 2 cut(s) | 93, 195 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 1 cut(s) | 72 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 1 cut(s) | 12 |
| Cfr13I | GGNCC | 1 cut(s) | 374 |
| Csp6I | GTAC | 3 cut(s) | 506, 563, 657 |
| CviAII | CATG | 3 cut(s) | 481, 617, 697 |
| CviQI | GTAC | 3 cut(s) | 506, 563, 657 |
| DdeI | CTNAG | 3 cut(s) | 106, 143, 457 |
| DpnI | GATC | 7 cut(s) | 21, 66, 219, 301, 405, 663, 711 |
| DpnII | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| DraIII | CACNNNGTG | 2 cut(s) | 245, 579 |
| EaeI | YGGCCR | 1 cut(s) | 722 |
| EagI | CGGCCG | 1 cut(s) | 722 |
| Eam1104I | CTCTTC | 3 cut(s) | 180, 343, 550 |
| EarI | CTCTTC | 3 cut(s) | 180, 343, 550 |
| EciI | GGCGGA | 1 cut(s) | 514 |
| EclXI | CGGCCG | 1 cut(s) | 722 |
| Eco31I | GGTCTC | 1 cut(s) | 90 |
| Eco47I | GGWCC | 1 cut(s) | 374 |
| Eco47III | AGCGCT | 1 cut(s) | 11 |
| Eco52I | CGGCCG | 1 cut(s) | 722 |
| Eco72I | CACGTG | 1 cut(s) | 579 |
| Eco88I | CYCGRG | 2 cut(s) | 291, 592 |
| EcoO109I | RGGNCCY | 1 cut(s) | 374 |
| EcoRII | CCWGG | 2 cut(s) | 178, 361 |
| FaeI | CATG | 3 cut(s) | 484, 620, 700 |
| FatI | CATG | 3 cut(s) | 480, 616, 696 |
| FauNDI | CATATG | 1 cut(s) | 493 |
| FbaI | TGATCA | 3 cut(s) | 64, 217, 661 |
| FblI | GTMKAC | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| FokI | GGATG | 2 cut(s) | 339, 382 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| FspBI | CTAG | 1 cut(s) | 516 |
| GlaI | GCGC | 1 cut(s) | 11 |
| GluI | GCNGC | 1 cut(s) | 207 |
| GsaI | CCCAGC | 1 cut(s) | 631 |
| HaeII | RGCGCY | 1 cut(s) | 13 |
| HaeIII | GGCC | 1 cut(s) | 724 |
| HapII | CCGG | 3 cut(s) | 384, 721, 725 |
| HhaI | GCGC | 1 cut(s) | 12 |
| Hin1II | CATG | 3 cut(s) | 484, 620, 700 |
| Hin6I | GCGC | 1 cut(s) | 10 |
| HinP1I | GCGC | 1 cut(s) | 10 |
| HincII | GTYRAC | 2 cut(s) | 165, 443 |
| HindII | GTYRAC | 2 cut(s) | 165, 443 |
| HinfI | GANTC | 7 cut(s) | 4, 185, 211, 424, 590, 675, 693 |
| HpaII | CCGG | 3 cut(s) | 384, 721, 725 |
| HphI | GGTGA | 2 cut(s) | 29, 194 |
| Hpy166II | GTNNAC | 4 cut(s) | 165, 171, 443, 506 |
| Hpy188I | TCNGA | 1 cut(s) | 435 |
| Hpy188III | TCNNGA | 3 cut(s) | 215, 587, 617 |
| Hpy8I | GTNNAC | 4 cut(s) | 165, 171, 443, 506 |
| Hpy99I | CGWCG | 2 cut(s) | 159, 447 |
| HpyAV | CCTTC | 3 cut(s) | 491, 519, 567 |
| HpyCH4III | ACNGT | 2 cut(s) | 447, 470 |
| HpyCH4IV | ACGT | 4 cut(s) | 154, 167, 502, 578 |
| HpyCH4V | TGCA | 1 cut(s) | 700 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 206, 533 |
| HpyF3I | CTNAG | 3 cut(s) | 106, 143, 457 |
| HpySE526I | ACGT | 4 cut(s) | 154, 167, 502, 578 |
| Hsp92II | CATG | 3 cut(s) | 484, 620, 700 |
| HspAI | GCGC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 3 cut(s) | 64, 217, 661 |
| Kzo9I | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| LguI | GCTCTTC | 2 cut(s) | 343, 550 |
| LmnI | GCTCC | 2 cut(s) | 385, 559 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| LweI | GCATC | 1 cut(s) | 610 |
| MaeI | CTAG | 1 cut(s) | 516 |
| MaeII | ACGT | 4 cut(s) | 154, 167, 502, 578 |
| MaeIII | GTNAC | 1 cut(s) | 193 |
| MalI | GATC | 7 cut(s) | 21, 66, 219, 301, 405, 663, 711 |
| MboI | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| MboII | GAAGA | 6 cut(s) | 113, 167, 330, 383, 537, 719 |
| MflI | RGATCY | 2 cut(s) | 299, 709 |
| MhlI | GDGCHC | 1 cut(s) | 556 |
| MluCI | AATT | 1 cut(s) | 52 |
| MlyI | GAGTC | 3 cut(s) | 205, 584, 684 |
| MnlI | CCTC | 5 cut(s) | 252, 266, 314, 352, 677 |
| MseI | TTAA | 2 cut(s) | 51, 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MspI | CCGG | 3 cut(s) | 384, 721, 725 |
| MspR9I | CCNGG | 3 cut(s) | 180, 363, 384 |
| Mva1269I | GAATGC | 1 cut(s) | 490 |
| MvaI | CCWGG | 2 cut(s) | 180, 363 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 206, 533 |
| NciI | CCSGG | 1 cut(s) | 384 |
| NdeI | CATATG | 1 cut(s) | 493 |
| NdeII | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| NlaIII | CATG | 3 cut(s) | 484, 620, 700 |
| NlaIV | GGNNCC | 1 cut(s) | 375 |
| NmuCI | GTSAC | 1 cut(s) | 193 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PaqCI | CACCTGC | 1 cut(s) | 577 |
| PciSI | GCTCTTC | 2 cut(s) | 343, 550 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 220 |
| PctI | GAATGC | 1 cut(s) | 490 |
| PfeI | GAWTC | 4 cut(s) | 4, 185, 424, 693 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 245, 579 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| Ple19I | CGATCG | 1 cut(s) | 406 |
| PleI | GAGTC | 3 cut(s) | 205, 584, 683 |
| PmaCI | CACGTG | 1 cut(s) | 579 |
| PmlI | CACGTG | 1 cut(s) | 579 |
| PpsI | GAGTC | 3 cut(s) | 205, 584, 683 |
| Ppu21I | YACGTR | 1 cut(s) | 579 |
| PpuMI | RGGWCCY | 1 cut(s) | 374 |
| Psp5II | RGGWCCY | 1 cut(s) | 374 |
| Psp6I | CCWGG | 2 cut(s) | 178, 361 |
| PspCI | CACGTG | 1 cut(s) | 579 |
| PspFI | CCCAGC | 1 cut(s) | 627 |
| PspGI | CCWGG | 2 cut(s) | 178, 361 |
| PspN4I | GGNNCC | 1 cut(s) | 375 |
| PspPI | GGNCC | 1 cut(s) | 374 |
| PspPPI | RGGWCCY | 1 cut(s) | 374 |
| PsuI | RGATCY | 2 cut(s) | 299, 709 |
| PvuI | CGATCG | 1 cut(s) | 406 |
| RsaI | GTAC | 3 cut(s) | 507, 564, 658 |
| RsaNI | GTAC | 3 cut(s) | 506, 563, 657 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SalI | GTCGAC | 1 cut(s) | 441 |
| SapI | GCTCTTC | 2 cut(s) | 343, 550 |
| SaqAI | TTAA | 2 cut(s) | 51, 474 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 7 cut(s) | 19, 64, 217, 299, 403, 661, 709 |
| Sau96I | GGNCC | 1 cut(s) | 374 |
| SchI | GAGTC | 3 cut(s) | 205, 584, 684 |
| ScrFI | CCNGG | 3 cut(s) | 180, 363, 384 |
| SduI | GDGCHC | 1 cut(s) | 556 |
| SfaNI | GCATC | 1 cut(s) | 610 |
| SinI | GGWCC | 1 cut(s) | 374 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| Sse9I | AATT | 1 cut(s) | 52 |
| SsiI | CCGC | 1 cut(s) | 525 |
| SspMI | CTAG | 1 cut(s) | 516 |
| StyD4I | CCNGG | 3 cut(s) | 178, 361, 382 |
| TaaI | ACNGT | 2 cut(s) | 447, 470 |
| TaiI | ACGT | 4 cut(s) | 157, 170, 505, 581 |
| TaqI | TCGA | 3 cut(s) | 442, 588, 678 |
| TasI | AATT | 1 cut(s) | 52 |
| TfiI | GAWTC | 4 cut(s) | 4, 185, 424, 693 |
| Tru1I | TTAA | 2 cut(s) | 51, 474 |
| Tru9I | TTAA | 2 cut(s) | 51, 474 |
| TscAI | CASTG | 2 cut(s) | 100, 202 |
| TseFI | GTSAC | 1 cut(s) | 193 |
| TseI | GCWGC | 1 cut(s) | 206 |
| Tsp45I | GTSAC | 1 cut(s) | 193 |
| TspDTI | ATGAA | 7 cut(s) | 17, 114, 137, 480, 497, 510, 685 |
| TspGWI | ACGGA | 1 cut(s) | 47 |
| TspRI | CASTG | 2 cut(s) | 100, 202 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 245, 579 |
| VpaK11BI | GGWCC | 1 cut(s) | 374 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 359, 650 |
| XmiI | GTMKAC | 1 cut(s) | 442 |
| XspI | CTAG | 1 cut(s) | 516 |