RchiOBHm_Chr2g0159441

transposition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000034
Physical Location & Seq
Forward (+)
75567696 .. 75570396
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52801

Sequence Viewer

Length: 2043 bp
ATGACTACATCTATTCTTCCAAATCAGATTCATACCACTCAATCAACCATAGTTTTCCTACCAAACATTCTTCTTGATGAAACCAACTATCCCACCTGGTTGTTTCGGATGGAGTCATTTCTTAGGGGCCAAAATCTGTTTGGTTTTGTTGATGGCACAAATCCATGTCCACCTCAGTTTATTCGTGCTTCTGATGGGAGTTCAAGCACCATTTCTGTTGATTTTATCTCTTGGAAGACACAGGATCAAAGTATTGTGAATATGATTGGTCAAACTCTGAGTCCAGTAGCTATGACATGTGCCCTCAAGTCAAATCTTCAGAATGTAAAGAAAGGATCTGATGACATTGAAACCTACCTTGACAAGATTAAGACTGCAAAGGATGCACTAGAAACTGTAGGAGTTGCTATAGATGATGATGATATTGTTGTTACAGTGCTTAATGGTCTACCATCTGAATTTGCTGCAATTAAGACTGTGATTAGAGCTCAATTCACCAGCTGTTCCTTGAGTCAACTAAAAACATTGCTTAAAGCCGCAGAAATGGATATTGGAAATGAAGCTCAGGGTATTCAGGGCATACTCACTGCAATGATTGCCAAGATCAATACTCCAACTCAAGCTTCCCCCACTCAGTCTTCGTGCACTACATCTTCTCCTCCATCTGTACCAGTTACTACTCAAGTTCAGTCACAAATGCAGACTTCCTCATGTGCATCATCCTCACAACCACAAATGCAGACTCCTTCATATGCCATGCAGACTCCTTCATATGCCGCTTCTACTATTCCACCTGGTTTTTCTACATCAGGCCTGCCTGCTTACCCCATCTCTGCTCAAACACCCTACATGCCTATTCCTGCCATGCCTTATGGCTTCACACCATTTCCAACATATCCTGTGTTCAATACACCTACTGGTGTTGCTGGTTTTTATGCTGGTAGAGGCACTGGGAGATCTAATAATAATGTTGTCAGAGGATACAACAACAATAATTTTGCTGGTGGCAGAGGCACTCCAATGAATGGCAATACTGGTGGTTTTAGACCAACTGGCAATACAGGCAACAATCTCACTTGTCAGTGGTGCAACAAGGTTGGTCATGGGGCCAAAACCTGCAGATCTCTCCCTAATGCTCAGAATGCTAACAACTCAACCACTCAAGGTGGATGTCAATACTGTGGAAGGCATGGACATACAGTAGATAGATGCTACTTCATTATTGGATTCCCTGGTCAACAAAGTGAACCTGAAGAAACAACTGCACTGCTTGCTGCAACCAATCTTGCACCCCAATACTGGCTTGCTGATACTGGAGCTACTAATCATATGACTCACAATCCTCAAGTGCTTAACAATGTGATCCCTTATCCTACAACTGATGGAGTGCAGATTGGTAATGGTAACCAACTTGCCATTACTCATATTGGCAATGCCATGTTGGGAATACTCAAACTAGACAATATCTTGCTTATTCCTGATCTTGCTGCACATTTACTTTCCATTTATCAATTGTGCAAACAAAATAACTGCAGTGTGTGGTTTGATGAATTTATGTGTGTGATTCAGGACAAGGTACAGGGCAAAATTTTGTACCAGGGGCTGAGTAAGCAAGGCCTATACCCCATAACATTTGATCTGCCCATATTCAATAAAGCTTCTGCACCAATAAGTGGAAATAATAAAGATTCTGTGCAAGCATCTACAACTCCTCAGCAATCTGCATTTCTTGGACAACAAGTGAAGCATAATATTTGGCATCAAAGACTTGGTCATCCTGCAAATGAAATTGTCAAACTCATGTTGCAGAAATGCAAGATAGAACAACTTGTAGATTGTATGAAGACAGTGTGTGAGCCATGTCTGCTAGGAAAATTTCATAAGCTACATTTTTCTGCCTCTCAAACTAGGTGTGCCTCACCCTTTGAACTTGTACACTCTGATGTTTGGGGTTCTTCCCCACATCTCTCCATAGATGGTTATAGATACTTTGTCCTGTTCATTGATGATTGTACAAGGTTTACTTGGGTGTTAACCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HTH_21 rve

Protein Analysis

680

Amino Acids

73.92

Weight (kDa)

7.17

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 23 - 57 1.4e-06 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 100 - 182 2.2e-10 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 434 - 508 1.1e-11 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 579 - 625 3.1e-09 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34070
fragaria_vesca FvH4_1g00961 FvH4_1g10351 FvH4_1g15351 FvH4_1g26571 FvH4_1g26621 FvH4_1g28434 FvH4_2g00591 FvH4_2g06411 FvH4_2g16831 FvH4_2g20161 FvH4_2g23291 FvH4_3g04191 FvH4_3g07021 FvH4_3g17162 FvH4_3g17262 FvH4_3g38081 FvH4_3g39581 FvH4_3g45090 FvH4_4g05782 FvH4_4g05872 FvH4_4g13041 FvH4_4g23411 FvH4_4g24051 FvH4_4g26452 FvH4_4g26453 FvH4_4g27903 FvH4_4g33449 FvH4_5g01072 FvH4_5g03532 FvH4_5g04140 FvH4_5g06631 FvH4_5g09401 FvH4_5g09403 FvH4_5g20624 FvH4_5g20701 FvH4_5g21971 FvH4_5g36481 FvH4_5g38691 FvH4_6g11492 FvH4_6g19792 FvH4_6g20601 FvH4_6g24641 FvH4_6g34291 FvH4_6g36662 FvH4_6g36681 FvH4_6g36682 FvH4_6g36682 FvH4_6g36682 FvH4_6g36770 FvH4_6g36981 FvH4_6g37021 FvH4_6g37022 FvH4_6g43610 FvH4_7g10872 FvH4_7g10872 FvH4_7g16100 FvH4_7g19191 FvH4_7g23761 FvH4_7g24921
malus_domestica MD01G1077600.v1.1 MD02G1010600.v1.1 MD03G1059500.v1.1 MD04G1024600.v1.1 MD04G1101800.v1.1 MD04G1151700.v1.1 MD05G1025000.v1.1 MD05G1129300.v1.1 MD05G1320000.v1.1 MD06G1136100.v1.1 MD08G1157400.v1.1 MD09G1041800.v1.1 MD10G1109600.v1.1 MD10G1255600.v1.1 MD11G1108900.v1.1 MD11G1145100.v1.1 MD11G1242500.v1.1 MD12G1113300.v1.1 MD12G1231800.v1.1 MD13G1099200.v1.1 MD13G1142500.v1.1 MD15G1114200.v1.1 MD15G1119400.v1.1 MD15G1372100.v1.1 MD16G1038200.v1.1 MD16G1163700.v1.1 MD17G1055600.v1.1 MD17G1089000.v1.1 MD17G1109500.v1.1
prunus_persica Prupe.1G091500_v2.0.a1 Prupe.1G170400_v2.0.a1 Prupe.2G074700_v2.0.a1 Prupe.3G024500_v2.0.a1 Prupe.3G026300_v2.0.a1 Prupe.3G245500_v2.0.a1 Prupe.4G199600_v2.0.a1 Prupe.4G230800_v2.0.a1 Prupe.4G238700_v2.0.a1 Prupe.6G052200_v2.0.a1 Prupe.8G080900_v2.0.a1 Prupe.8G084200_v2.0.a1 Prupe.8G185000_v2.0.a1 Prupe.8G185100_v2.0.a1
pyrus_communis pycom01g07890 pycom01g09690 pycom01g14780 pycom01g18640 pycom03g07210 pycom05g03010 pycom05g11250 pycom05g23340 pycom05g27720 pycom06g05610 pycom06g12180 pycom09g06110 pycom09g08430 pycom10g16550 pycom11g03760 pycom11g24270 pycom12g12290 pycom13g10850 pycom13g18230 pycom13g22260 pycom13g27850 pycom14g17700 pycom15g07910 pycom15g26210 pycom15g26440 pycom15g29540 pycom16g00280 pycom16g18160 pycom17g16360 pycom17g19900
rosa_chinensis RchiOBHm_Chr1g0313671 RchiOBHm_Chr1g0322301 RchiOBHm_Chr1g0334441 RchiOBHm_Chr1g0337651 RchiOBHm_Chr1g0337711 RchiOBHm_Chr1g0339131 RchiOBHm_Chr1g0344491 RchiOBHm_Chr1g0347771 RchiOBHm_Chr1g0349331 RchiOBHm_Chr1g0354241 RchiOBHm_Chr1g0355351 RchiOBHm_Chr1g0376111 RchiOBHm_Chr1g0379881 RchiOBHm_Chr1g0384421 RchiOBHm_Chr2g0101531 RchiOBHm_Chr2g0117741 RchiOBHm_Chr2g0126581 RchiOBHm_Chr2g0129181 RchiOBHm_Chr2g0136201 RchiOBHm_Chr2g0137991 RchiOBHm_Chr2g0156571 RchiOBHm_Chr2g0159441 RchiOBHm_Chr2g0164131 RchiOBHm_Chr2g0174291 RchiOBHm_Chr2g0175161 RchiOBHm_Chr3g0448481 RchiOBHm_Chr3g0450851 RchiOBHm_Chr3g0450861 RchiOBHm_Chr3g0461251 RchiOBHm_Chr3g0463031 RchiOBHm_Chr3g0465981 RchiOBHm_Chr3g0472811 RchiOBHm_Chr3g0472821 RchiOBHm_Chr3g0480521 RchiOBHm_Chr3g0480531 RchiOBHm_Chr3g0482021 RchiOBHm_Chr3g0496771 RchiOBHm_Chr4g0393151 RchiOBHm_Chr4g0407171 RchiOBHm_Chr4g0431731 RchiOBHm_Chr4g0432071 RchiOBHm_Chr4g0436951 RchiOBHm_Chr5g0000711 RchiOBHm_Chr5g0004361 RchiOBHm_Chr5g0012631 RchiOBHm_Chr5g0025271 RchiOBHm_Chr5g0032551 RchiOBHm_Chr5g0038991 RchiOBHm_Chr5g0043811 RchiOBHm_Chr5g0058511 RchiOBHm_Chr5g0077241 RchiOBHm_Chr5g0079981 RchiOBHm_Chr5g0083071 RchiOBHm_Chr6g0256871 RchiOBHm_Chr6g0266721 RchiOBHm_Chr6g0299971 RchiOBHm_Chr6g0304931 RchiOBHm_Chr7g0177331 RchiOBHm_Chr7g0182851 RchiOBHm_Chr7g0190501 RchiOBHm_Chr7g0200091 RchiOBHm_Chr7g0203981 RchiOBHm_Chr7g0206011 RchiOBHm_Chr7g0206111 RchiOBHm_Chr7g0206441 RchiOBHm_Chr7g0220151 RchiOBHm_Chr7g0234441 RchiOBHm_Chr7g0234661 RchiOBHm_Chr7g0238281
rosa_laevigata RLG00000003338 RLG00000020373 RLG00000020377 RLG00000020415 RLG00000020416 RLG00000026600
rosa_multiflora Rmu_co8214922.1_g000001 Rmu_co8257903.1_g000001 Rmu_co8295123.1_g000001 Rmu_sc0000177.1_g000007 Rmu_sc0000614.1_g000005 Rmu_sc0000648.1_g000003 Rmu_sc0000809.1_g000004 Rmu_sc0001044.1_g000022 Rmu_sc0001211.1_g000100 Rmu_sc0001306.1_g000013 Rmu_sc0001493.1_g000053 Rmu_sc0001605.1_g000001 Rmu_sc0001706.1_g000033 Rmu_sc0001966.1_g000037 Rmu_sc0002080.1_g000051 Rmu_sc0002244.1_g000027 Rmu_sc0002669.1_g000045 Rmu_sc0002806.1_g000013 Rmu_sc0003012.1_g000028 Rmu_sc0003074.1_g000019 Rmu_sc0003180.1_g000020 Rmu_sc0003229.1_g000006 Rmu_sc0003229.1_g000015 Rmu_sc0003267.1_g000017 Rmu_sc0003387.1_g000008 Rmu_sc0004109.1_g000011 Rmu_sc0004483.1_g000021 Rmu_sc0004729.1_g000018 Rmu_sc0005124.1_g000007 Rmu_sc0006187.1_g000007 Rmu_sc0006311.1_g000005 Rmu_sc0006323.1_g000009 Rmu_sc0006619.1_g000003 Rmu_sc0006619.1_g000004 Rmu_sc0007216.1_g000004 Rmu_sc0012033.1_g000003 Rmu_sc0012414.1_g000003 Rmu_sc0013716.1_g000004 Rmu_sc0017020.1_g000002 Rmu_sc0017650.1_g000008 Rmu_sc0022997.1_g000002 Rmu_sc0026059.1_g000001 Rmu_sc0034277.1_g000001 Rmu_sc0038462.1_g000001 Rmu_ssc0000134.1_g000019 Rmu_ssc0000326.1_g000010 Rmu_ssc0000337.1_g000002
rosa_roxburghii Rroxscaffold_153G00436580 Rroxscaffold_1G00005540 Rroxscaffold_1G00007910 Rroxscaffold_1G00020780 Rroxscaffold_1G00024800 Rroxscaffold_1G00028530 Rroxscaffold_1G00035960 Rroxscaffold_1G00060770 Rroxscaffold_1G00063880 Rroxscaffold_1G00072730 Rroxscaffold_2G00090480 Rroxscaffold_2G00098360 Rroxscaffold_2G00098380 Rroxscaffold_2G00098390 Rroxscaffold_2G00098410 Rroxscaffold_2G00098420 Rroxscaffold_2G00099480 Rroxscaffold_2G00122440 Rroxscaffold_2G00130690 Rroxscaffold_2G00132840 Rroxscaffold_3G00259940 Rroxscaffold_3G00262860 Rroxscaffold_3G00262870 Rroxscaffold_3G00262880 Rroxscaffold_3G00262890 Rroxscaffold_4G00296680 Rroxscaffold_4G00315340 Rroxscaffold_5G00341760 Rroxscaffold_5G00350520 Rroxscaffold_5G00365550 Rroxscaffold_5G00367740 Rroxscaffold_5G00375090 Rroxscaffold_5G00377290 Rroxscaffold_6G00400710 Rroxscaffold_6G00402880 Rroxscaffold_6G00418980 Rroxscaffold_6G00419370 Rroxscaffold_6G00430760 Rroxscaffold_7G00161960 Rroxscaffold_7G00166140 Rroxscaffold_7G00175330 Rroxscaffold_7G00206820 Rroxscaffold_7G00212670
rosa_rugosa Rorug01G0429300 Rorug01G0429400 Rorug02G0276300 Rorug02G0362300 Rorug02G0412000 Rorug04G0283500.1 Rorug05G0121800 Rorug05G0138500 Rorug05G0138600 Rorug05G0221000 Rorug05G0556000 Rorug07G0094400 Rorug07G0119200
rosa_samantha Rh1AG022500 Rh1AG214800 Rh1AG295500 Rh1DG290300 Rh2AG469300 Rh2AG469600 Rh2AG469800 Rh2AG470000 Rh2AG472200 Rh2AG472300 Rh2AG472400 Rh2BG358100 Rh2BG456100 Rh2BG481900 Rh2BG482100 Rh2BG482300 Rh2BG482400 Rh2BG484300 Rh2BG484400 Rh2CG255600 Rh2CG455400 Rh2CG455500 Rh2CG455600 Rh2CG455900 Rh2CG456100 Rh2CG458100 Rh2CG458200 Rh2CG458300 Rh2DG466000 Rh2DG490700 Rh2DG490900 Rh2DG491100 Rh2DG491200 Rh2DG493500 Rh2DG493600 Rh4AG091000 Rh4BG347200 Rh4CG082200 Rh4CG099300 Rh5AG230100 Rh5AG230300 Rh5AG302500 Rh5AG302600 Rh5BG214100 Rh5BG231000 Rh5BG231100 Rh5BG310700 Rh5BG543300 Rh5CG238000 Rh5CG259000 Rh5CG259100 Rh5CG566500 Rh5DG027500 Rh5DG218700 Rh5DG236100 Rh5DG236300 Rh6AG285400 Rh6BG286900 Rh6BG376000 Rh6DG235600 Rh6DG280900 Rh6DG368700 Rh6DG423800 Rh7AG106800 Rh7AG226500 Rh7AG227900 Rh7AG228000 Rh7AG229300 Rh7BG097000 Rh7BG121300 Rh7BG129300 Rh7BG130100 Rh7BG222700 Rh7BG225700 Rh7BG225800 Rh7CG111500 Rh7CG131300 Rh7CG131600 Rh7CG131700 Rh7CG132100 Rh7CG132400 Rh7CG132500 Rh7CG132700 Rh7CG132900 Rh7CG221800 Rh7CG242400 Rh7CG242500 Rh7CG243800 Rh7CG244000 Rh7CG365700 Rh7DG109900 Rh7DG110000 Rh7DG129000 Rh7DG130400 Rh7DG236200 Rh7DG236300
rosa_wichuraiana Rw0G001140 Rw0G001660 Rw0G003710 Rw0G003800 Rw0G005640 Rw0G009930 Rw1G005610 Rw1G011690 Rw1G018880 Rw1G026950 Rw1G029360 Rw1G032170 Rw1G035710 Rw2G023950 Rw2G030240 Rw2G038210 Rw2G038490 Rw2G038500 Rw2G054270 Rw3G009830 Rw4G005830 Rw4G006210 Rw4G006690 Rw4G014470 Rw4G015560 Rw4G021550 Rw4G033420 Rw4G034150 Rw5G000890 Rw5G002510 Rw5G002580 Rw5G003440 Rw5G009960 Rw5G024480 Rw5G032910 Rw5G032990 Rw5G035340 Rw5G042620 Rw6G004790 Rw6G012300 Rw6G017050 Rw6G019300 Rw6G026800 Rw6G027320 Rw6G039180 Rw7G010750 Rw7G010920 Rw7G014890 Rw7G016540 Rw7G019730 Rw7G022510 Rw7G023070 Rw7G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1124
AccB7I CCANNNNNTGG 2 cut(s) 1025, 1673
AccI GTMKAC 1 cut(s) 448
AciI CCGC 2 cut(s) 537, 777
AclWI GGATC 3 cut(s) 252, 343, 1357
AcsI RAATTY 4 cut(s) 458, 1550, 1587, 1874
AcuI CTGAAG 2 cut(s) 302, 1272
AfaI GTAC 5 cut(s) 669, 1578, 1595, 1935, 2014
AfiI CCNNNNNNNGG 3 cut(s) 1025, 1299, 1673
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 5 cut(s) 204, 350, 907, 1651, 1928
AjnI CCWGG 4 cut(s) 95, 793, 1231, 1596
AjuI GAANNNNNNNTTGG 4 cut(s) 534, 566, 607, 639
AluBI AGCT 8 cut(s) 290, 488, 501, 563, 623, 1319, 1658, 1885
AluI AGCT 8 cut(s) 290, 488, 501, 563, 623, 1319, 1658, 1885
Alw21I GWGCWC 2 cut(s) 490, 647
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 3 cut(s) 252, 343, 1357
AlwNI CAGNNNCTG 1 cut(s) 1603
AoxI GGCC 4 cut(s) 127, 811, 1107, 1615
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 3 cut(s) 464, 1274, 1487
ApoI RAATTY 4 cut(s) 458, 1550, 1587, 1874
ArsI GACNNNNNNTTYG 4 cut(s) 265, 297, 1756, 1788
AspS9I GGNCC 2 cut(s) 127, 1107
AsuHPI GGTGA 2 cut(s) 487, 1911
BaeGI GKGCMC 2 cut(s) 304, 647
BanII GRGCYC 1 cut(s) 490
BbsI GAAGAC 3 cut(s) 242, 630, 1850
Bbv12I GWGCWC 2 cut(s) 490, 647
BbvCI CCTCAGC 1 cut(s) 1713
BbvI GCAGC 3 cut(s) 451, 1261, 1474
BccI CCATC 8 cut(s) 103, 146, 188, 460, 670, 836, 1376, 1970
BciT130I CCWGG 4 cut(s) 97, 795, 1233, 1598
BciVI GTATCC 1 cut(s) 974
BfaI CTAG 4 cut(s) 389, 1457, 1868, 1908
BfmI CTRYAG 4 cut(s) 396, 408, 1117, 1531
BfuAI ACCTGC 1 cut(s) 1124
BfuI GTATCC 1 cut(s) 974
BglII AGATCT 2 cut(s) 956, 1121
BisI GCNGC 5 cut(s) 465, 537, 777, 1275, 1488
BlsI GCNGC 5 cut(s) 466, 538, 778, 1276, 1489
Bme1390I CCNGG 4 cut(s) 97, 795, 1233, 1598
BmgT120I GGNCC 2 cut(s) 127, 1107
BmiI GGNNCC 2 cut(s) 128, 1108
BmrFI CCNGG 4 cut(s) 97, 795, 1233, 1598
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 5 cut(s) 373, 725, 1199, 1709, 1768
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 3 cut(s) 242, 630, 1850
BpmI CTGGAG 1 cut(s) 1335
Bpu10I CCTNAGC 2 cut(s) 564, 1713
BpuEI CTTGAG 6 cut(s) 290, 529, 603, 666, 1146, 1329
BsaJI CCNNGG 2 cut(s) 1231, 1597
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 3 cut(s) 1025, 1299, 1673
Bse1I ACTGG 8 cut(s) 284, 671, 922, 955, 1039, 1057, 1304, 1318
Bse3DI GCAATG 3 cut(s) 524, 597, 1438
BseBI CCWGG 4 cut(s) 97, 795, 1233, 1598
BseDI CCNNGG 2 cut(s) 1231, 1597
BseGI GGATG 5 cut(s) 114, 388, 719, 1175, 1774
BseLI CCNNNNNNNGG 3 cut(s) 1025, 1299, 1673
BseMI GCAATG 3 cut(s) 524, 597, 1438
BseMII CTCAG 7 cut(s) 188, 269, 578, 647, 1151, 1595, 1727
BseNI ACTGG 8 cut(s) 284, 671, 922, 955, 1039, 1057, 1304, 1318
BseRI GAGGAG 2 cut(s) 648, 1701
BseSI GKGCMC 2 cut(s) 304, 647
BseXI GCAGC 3 cut(s) 451, 1261, 1474
BsgI GTGCAG 4 cut(s) 1248, 1409, 1473, 1647
BshFI GGCC 4 cut(s) 129, 813, 1109, 1617
BsiHKAI GWGCWC 2 cut(s) 490, 647
BslI CCNNNNNNNGG 3 cut(s) 1025, 1299, 1673
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 4 cut(s) 129, 813, 1109, 1617
Bsp1286I GDGCHC 3 cut(s) 304, 490, 647
Bsp1407I TGTACA 2 cut(s) 1933, 2012
Bsp143I GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
BspACI CCGC 2 cut(s) 537, 777
BspANI GGCC 4 cut(s) 129, 813, 1109, 1617
BspCNI CTCAG 7 cut(s) 187, 270, 577, 646, 1150, 1596, 1726
BspLI GGNNCC 2 cut(s) 128, 1108
BspMAI CTGCAG 2 cut(s) 1121, 1535
BspMI ACCTGC 1 cut(s) 1124
BspPI GGATC 3 cut(s) 252, 343, 1357
BsrDI GCAATG 3 cut(s) 524, 597, 1438
BsrGI TGTACA 2 cut(s) 1933, 2012
BsrI ACTGG 8 cut(s) 284, 671, 922, 955, 1039, 1057, 1304, 1318
BssECI CCNNGG 2 cut(s) 1231, 1597
BssMI GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
Bst2UI CCWGG 4 cut(s) 97, 795, 1233, 1598
Bst4CI ACNGT 6 cut(s) 397, 436, 478, 1181, 1201, 1849
BstAPI GCANNNNNTGC 3 cut(s) 383, 596, 1271
BstAUI TGTACA 2 cut(s) 1933, 2012
BstC8I GCNNGC 5 cut(s) 815, 819, 1272, 1305, 1698
BstDEI CTNAG 8 cut(s) 122, 174, 278, 564, 633, 1137, 1604, 1713
BstEII GGTNACC 1 cut(s) 1403
BstF5I GGATG 5 cut(s) 114, 388, 719, 1175, 1774
BstKTI GATC 8 cut(s) 247, 338, 606, 959, 1124, 1365, 1483, 1639
BstMBI GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
BstMWI GCNNNNNNNGC 7 cut(s) 383, 596, 1062, 1142, 1271, 1609, 1864
BstNI CCWGG 4 cut(s) 97, 795, 1233, 1598
BstNSI RCATGY 2 cut(s) 300, 853
BstPI GGTNACC 1 cut(s) 1403
BstSCI CCNGG 4 cut(s) 95, 793, 1231, 1596
BstSFI CTRYAG 4 cut(s) 396, 408, 1117, 1531
BstSLI GKGCMC 2 cut(s) 304, 647
BstV1I GCAGC 3 cut(s) 451, 1261, 1474
BstV2I GAAGAC 3 cut(s) 242, 630, 1850
BstX2I RGATCY 3 cut(s) 335, 956, 1121
BstYI RGATCY 3 cut(s) 335, 956, 1121
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 4 cut(s) 129, 813, 1109, 1617
BtsCI GGATG 5 cut(s) 114, 388, 719, 1175, 1774
BtsI GCAGTG 3 cut(s) 585, 1265, 1540
BtsIMutI CAGTG 7 cut(s) 441, 585, 948, 1088, 1265, 1540, 1854
BveI ACCTGC 1 cut(s) 1124
Cac8I GCNNGC 5 cut(s) 815, 819, 1272, 1305, 1698
CaiI CAGNNNCTG 1 cut(s) 1603
Cfr13I GGNCC 2 cut(s) 127, 1107
CsiI ACCWGGT 2 cut(s) 95, 793
Csp6I GTAC 5 cut(s) 668, 1577, 1594, 1934, 2013
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviQI GTAC 5 cut(s) 668, 1577, 1594, 1934, 2013
DdeI CTNAG 8 cut(s) 122, 174, 278, 564, 633, 1137, 1604, 1713
DpnI GATC 8 cut(s) 246, 337, 605, 958, 1123, 1364, 1482, 1638
DpnII GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
Ecl136II GAGCTC 1 cut(s) 488
Eco147I AGGCCT 2 cut(s) 813, 1617
Eco24I GRGCYC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 488
Eco57I CTGAAG 2 cut(s) 302, 1272
Eco91I GGTNACC 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 1403
EcoRII CCWGG 4 cut(s) 95, 793, 1231, 1596
EcoT38I GRGCYC 1 cut(s) 490
FalI AAGNNNNNCTT 2 cut(s) 2008, 2040
FauNDI CATATG 3 cut(s) 751, 772, 1329
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 465, 537, 777, 1275, 1488
FokI GGATG 5 cut(s) 121, 395, 706, 1182, 1761
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 465, 537, 777, 1275, 1488
FspBI CTAG 4 cut(s) 389, 1457, 1868, 1908
GluI GCNGC 5 cut(s) 465, 537, 777, 1275, 1488
GsuI CTGGAG 1 cut(s) 1335
HaeIII GGCC 4 cut(s) 129, 813, 1109, 1617
HincII GTYRAC 3 cut(s) 515, 1238, 2034
HindII GTYRAC 3 cut(s) 515, 1238, 2034
HindIII AAGCTT 2 cut(s) 621, 1656
HpaI GTTAAC 1 cut(s) 2034
HphI GGTGA 2 cut(s) 487, 1911
Hpy166II GTNNAC 9 cut(s) 170, 449, 515, 645, 1238, 1247, 1936, 2022, 2034
Hpy188III TCNNGA 3 cut(s) 74, 1478, 1568
Hpy8I GTNNAC 9 cut(s) 170, 449, 515, 645, 1238, 1247, 1936, 2022, 2034
HpyAV CCTTC 3 cut(s) 756, 777, 1179
HpyCH4III ACNGT 6 cut(s) 397, 436, 478, 1181, 1201, 1849
HpyF10VI GCNNNNNNNGC 7 cut(s) 383, 596, 1062, 1142, 1271, 1609, 1864
HpyF3I CTNAG 8 cut(s) 122, 174, 278, 564, 633, 1137, 1604, 1713
KspAI GTTAAC 1 cut(s) 2034
Kzo9I GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
LmnI GCTCC 1 cut(s) 1316
Lsp1109I GCAGC 3 cut(s) 451, 1261, 1474
LweI GCATC 5 cut(s) 373, 725, 1199, 1709, 1768
MabI ACCWGGT 2 cut(s) 95, 793
MaeI CTAG 4 cut(s) 389, 1457, 1868, 1908
MaeIII GTNAC 4 cut(s) 430, 673, 690, 1403
MalI GATC 8 cut(s) 246, 337, 605, 958, 1123, 1364, 1482, 1638
MboI GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
MboII GAAGA 9 cut(s) 8, 62, 247, 308, 630, 645, 1265, 1855, 1947
MfeI CAATTG 1 cut(s) 1511
MflI RGATCY 3 cut(s) 335, 956, 1121
MhlI GDGCHC 3 cut(s) 304, 490, 647
MluCI AATT 9 cut(s) 458, 468, 491, 994, 1511, 1550, 1587, 1788, 1874
MlyI GAGTC 6 cut(s) 122, 289, 520, 736, 757, 1327
MmeI TCCRAC 2 cut(s) 638, 914
MseI TTAA 6 cut(s) 369, 441, 471, 531, 1353, 2033
MslI CAYNNNNRTG 3 cut(s) 590, 1019, 1941
MspA1I CMGCKG 1 cut(s) 501
MspR9I CCNGG 4 cut(s) 97, 795, 1233, 1598
MunI CAATTG 1 cut(s) 1511
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 4 cut(s) 97, 795, 1233, 1598
MwoI GCNNNNNNNGC 7 cut(s) 383, 596, 1062, 1142, 1271, 1609, 1864
NdeI CATATG 3 cut(s) 751, 772, 1329
NdeII GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
NlaIV GGNNCC 2 cut(s) 128, 1108
NmuCI GTSAC 1 cut(s) 690
NspI RCATGY 2 cut(s) 300, 853
PceI AGGCCT 2 cut(s) 813, 1617
PciI ACATGT 1 cut(s) 296
PctI GAATGC 1 cut(s) 1147
PfeI GAWTC 4 cut(s) 28, 1227, 1564, 1688
PflFI GACNNNGTC 1 cut(s) 1770
PflMI CCANNNNNTGG 2 cut(s) 1025, 1673
PkrI GCNGC 5 cut(s) 466, 538, 778, 1276, 1489
PleI GAGTC 6 cut(s) 121, 288, 519, 736, 757, 1327
PpsI GAGTC 6 cut(s) 121, 288, 519, 736, 757, 1327
PscI ACATGT 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 490
Psp6I CCWGG 4 cut(s) 95, 793, 1231, 1596
PspEI GGTNACC 1 cut(s) 1403
PspGI CCWGG 4 cut(s) 95, 793, 1231, 1596
PspN4I GGNNCC 2 cut(s) 128, 1108
PspPI GGNCC 2 cut(s) 127, 1107
PstI CTGCAG 2 cut(s) 1121, 1535
PstNI CAGNNNCTG 1 cut(s) 1603
PsuI RGATCY 3 cut(s) 335, 956, 1121
PsyI GACNNNGTC 1 cut(s) 1770
PvuII CAGCTG 1 cut(s) 501
RsaI GTAC 5 cut(s) 669, 1578, 1595, 1935, 2014
RsaNI GTAC 5 cut(s) 668, 1577, 1594, 1934, 2013
RseI CAYNNNNRTG 3 cut(s) 590, 1019, 1941
SacI GAGCTC 1 cut(s) 490
SaqAI TTAA 6 cut(s) 369, 441, 471, 531, 1353, 2033
SatI GCNGC 5 cut(s) 465, 537, 777, 1275, 1488
Sau3AI GATC 8 cut(s) 244, 335, 603, 956, 1121, 1362, 1480, 1636
Sau96I GGNCC 2 cut(s) 127, 1107
SchI GAGTC 6 cut(s) 122, 289, 520, 736, 757, 1327
ScrFI CCNGG 4 cut(s) 97, 795, 1233, 1598
SduI GDGCHC 3 cut(s) 304, 490, 647
SexAI ACCWGGT 2 cut(s) 95, 793
SfaNI GCATC 5 cut(s) 373, 725, 1199, 1709, 1768
SfcI CTRYAG 4 cut(s) 396, 408, 1117, 1531
SmiMI CAYNNNNRTG 3 cut(s) 590, 1019, 1941
SmlI CTYRAG 6 cut(s) 305, 508, 618, 681, 1161, 1344
SmoI CTYRAG 6 cut(s) 305, 508, 618, 681, 1161, 1344
Sse9I AATT 9 cut(s) 458, 468, 491, 994, 1511, 1550, 1587, 1788, 1874
SseBI AGGCCT 2 cut(s) 813, 1617
SsiI CCGC 2 cut(s) 537, 777
SspI AATATT 1 cut(s) 1753
SspMI CTAG 4 cut(s) 389, 1457, 1868, 1908
SstI GAGCTC 1 cut(s) 490
StuI AGGCCT 2 cut(s) 813, 1617
StyD4I CCNGG 4 cut(s) 95, 793, 1231, 1596
TaaI ACNGT 6 cut(s) 397, 436, 478, 1181, 1201, 1849
TasI AATT 9 cut(s) 458, 468, 491, 994, 1511, 1550, 1587, 1788, 1874
TatI WGTACW 2 cut(s) 1933, 2012
TauI GCSGC 2 cut(s) 539, 779
TfiI GAWTC 4 cut(s) 28, 1227, 1564, 1688
Tru1I TTAA 6 cut(s) 369, 441, 471, 531, 1353, 2033
Tru9I TTAA 6 cut(s) 369, 441, 471, 531, 1353, 2033
TscAI CASTG 7 cut(s) 441, 592, 955, 1088, 1272, 1540, 1854
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 3 cut(s) 464, 1274, 1487
Tsp45I GTSAC 1 cut(s) 690
TspRI CASTG 7 cut(s) 441, 592, 955, 1088, 1272, 1540, 1854
Tth111I GACNNNGTC 1 cut(s) 1770
Van91I CCANNNNNTGG 2 cut(s) 1025, 1673
VneI GTGCAC 1 cut(s) 643
XapI RAATTY 4 cut(s) 458, 1550, 1587, 1874
XceI RCATGY 2 cut(s) 300, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 4 cut(s) 389, 1457, 1868, 1908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.