ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 64 - 212 | 5.2e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 490 |
| AccII | CGCG | 3 cut(s) | 35, 378, 604 |
| AclWI | GGATC | 3 cut(s) | 252, 402, 591 |
| AcsI | RAATTY | 2 cut(s) | 431, 515 |
| AcuI | CTGAAG | 1 cut(s) | 410 |
| AfaI | GTAC | 3 cut(s) | 190, 302, 531 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 61, 121, 122, 415, 490, 579 |
| AflIII | ACRYGT | 1 cut(s) | 43 |
| AgsI | TTSAA | 2 cut(s) | 212, 616 |
| AjnI | CCWGG | 1 cut(s) | 120 |
| AluBI | AGCT | 3 cut(s) | 329, 374, 388 |
| AluI | AGCT | 3 cut(s) | 329, 374, 388 |
| Alw21I | GWGCWC | 2 cut(s) | 331, 376 |
| Alw26I | GTCTC | 2 cut(s) | 399, 501 |
| AlwI | GGATC | 3 cut(s) | 252, 402, 591 |
| AoxI | GGCC | 4 cut(s) | 286, 422, 587, 649 |
| ApoI | RAATTY | 2 cut(s) | 431, 515 |
| AseI | ATTAAT | 1 cut(s) | 267 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AspS9I | GGNCC | 5 cut(s) | 7, 64, 126, 286, 650 |
| AsuHPI | GGTGA | 2 cut(s) | 7, 64 |
| AsuII | TTCGAA | 1 cut(s) | 345 |
| AvaII | GGWCC | 3 cut(s) | 7, 64, 126 |
| BanII | GRGCYC | 3 cut(s) | 331, 376, 597 |
| BbsI | GAAGAC | 2 cut(s) | 201, 716 |
| Bbv12I | GWGCWC | 2 cut(s) | 331, 376 |
| BbvCI | CCTCAGC | 1 cut(s) | 150 |
| BciT130I | CCWGG | 1 cut(s) | 122 |
| BcoDI | GTCTC | 2 cut(s) | 399, 501 |
| BfaI | CTAG | 1 cut(s) | 257 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 365 |
| BglII | AGATCT | 1 cut(s) | 142 |
| Bme1390I | CCNGG | 1 cut(s) | 122 |
| Bme18I | GGWCC | 3 cut(s) | 7, 64, 126 |
| BmgT120I | GGNCC | 5 cut(s) | 7, 64, 126, 286, 650 |
| BmiI | GGNNCC | 2 cut(s) | 127, 128 |
| BmrFI | CCNGG | 1 cut(s) | 122 |
| BmrI | ACTGGG | 2 cut(s) | 638, 647 |
| BmsI | GCATC | 2 cut(s) | 302, 681 |
| BmuI | ACTGGG | 2 cut(s) | 638, 647 |
| BpiI | GAAGAC | 2 cut(s) | 201, 716 |
| Bpu10I | CCTNAGC | 2 cut(s) | 150, 591 |
| Bpu14I | TTCGAA | 1 cut(s) | 345 |
| BsaI | GGTCTC | 2 cut(s) | 399, 501 |
| BsaJI | CCNNGG | 4 cut(s) | 121, 282, 535, 705 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 61, 121, 122, 415, 490, 579 |
| Bse118I | RCCGGY | 2 cut(s) | 4, 61 |
| Bse1I | ACTGG | 2 cut(s) | 644, 653 |
| Bse3DI | GCAATG | 1 cut(s) | 495 |
| BseBI | CCWGG | 1 cut(s) | 122 |
| BseDI | CCNNGG | 4 cut(s) | 121, 282, 535, 705 |
| BseGI | GGATG | 2 cut(s) | 317, 514 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 61, 121, 122, 415, 490, 579 |
| BseMI | GCAATG | 1 cut(s) | 495 |
| BseMII | CTCAG | 5 cut(s) | 141, 173, 415, 471, 582 |
| BseNI | ACTGG | 2 cut(s) | 644, 653 |
| Bsh1236I | CGCG | 3 cut(s) | 35, 378, 604 |
| BshFI | GGCC | 4 cut(s) | 288, 424, 589, 651 |
| BsiHKAI | GWGCWC | 2 cut(s) | 331, 376 |
| BsiSI | CCGG | 3 cut(s) | 5, 62, 298 |
| BslFI | GGGAC | 1 cut(s) | 112 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 61, 121, 122, 415, 490, 579 |
| BsmAI | GTCTC | 2 cut(s) | 399, 501 |
| BsmFI | GGGAC | 1 cut(s) | 112 |
| BsnI | GGCC | 4 cut(s) | 288, 424, 589, 651 |
| Bso31I | GGTCTC | 2 cut(s) | 399, 501 |
| Bsp119I | TTCGAA | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 331, 376, 597 |
| Bsp143I | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| BspANI | GGCC | 4 cut(s) | 288, 424, 589, 651 |
| BspCNI | CTCAG | 5 cut(s) | 142, 174, 414, 470, 583 |
| BspFNI | CGCG | 3 cut(s) | 35, 378, 604 |
| BspLI | GGNNCC | 2 cut(s) | 127, 128 |
| BspPI | GGATC | 3 cut(s) | 252, 402, 591 |
| BspQI | GCTCTTC | 1 cut(s) | 319 |
| BspT104I | TTCGAA | 1 cut(s) | 345 |
| BspTNI | GGTCTC | 2 cut(s) | 399, 501 |
| BsrDI | GCAATG | 1 cut(s) | 495 |
| BsrFI | RCCGGY | 2 cut(s) | 4, 61 |
| BsrI | ACTGG | 2 cut(s) | 644, 653 |
| BssAI | RCCGGY | 2 cut(s) | 4, 61 |
| BssECI | CCNNGG | 4 cut(s) | 121, 282, 535, 705 |
| BssMI | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| BssT1I | CCWWGG | 2 cut(s) | 282, 705 |
| Bst2UI | CCWGG | 1 cut(s) | 122 |
| Bst6I | CTCTTC | 2 cut(s) | 151, 319 |
| BstBI | TTCGAA | 1 cut(s) | 345 |
| BstC8I | GCNNGC | 2 cut(s) | 376, 742 |
| BstDEI | CTNAG | 5 cut(s) | 150, 182, 401, 457, 591 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 577 |
| BstF5I | GGATG | 2 cut(s) | 317, 514 |
| BstFNI | CGCG | 3 cut(s) | 35, 378, 604 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstKTI | GATC | 5 cut(s) | 145, 247, 397, 579, 586 |
| BstMAI | GTCTC | 2 cut(s) | 399, 501 |
| BstMBI | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 365, 601 |
| BstNI | CCWGG | 1 cut(s) | 122 |
| BstSCI | CCNGG | 1 cut(s) | 120 |
| BstUI | CGCG | 3 cut(s) | 35, 378, 604 |
| BstV2I | GAAGAC | 2 cut(s) | 201, 716 |
| BstX2I | RGATCY | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 142 |
| BsuRI | GGCC | 4 cut(s) | 288, 424, 589, 651 |
| BtsCI | GGATG | 2 cut(s) | 317, 514 |
| Cac8I | GCNNGC | 2 cut(s) | 376, 742 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Cfr10I | RCCGGY | 2 cut(s) | 4, 61 |
| Cfr13I | GGNCC | 5 cut(s) | 7, 64, 126, 286, 650 |
| CseI | GACGC | 1 cut(s) | 41 |
| Csp6I | GTAC | 3 cut(s) | 189, 301, 530 |
| CviAII | CATG | 2 cut(s) | 58, 485 |
| CviQI | GTAC | 3 cut(s) | 189, 301, 530 |
| DdeI | CTNAG | 5 cut(s) | 150, 182, 401, 457, 591 |
| DpnI | GATC | 5 cut(s) | 144, 246, 396, 578, 585 |
| DpnII | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| Eam1104I | CTCTTC | 2 cut(s) | 151, 319 |
| EarI | CTCTTC | 2 cut(s) | 151, 319 |
| Ecl136II | GAGCTC | 2 cut(s) | 329, 374 |
| Eco130I | CCWWGG | 2 cut(s) | 282, 705 |
| Eco24I | GRGCYC | 3 cut(s) | 331, 376, 597 |
| Eco31I | GGTCTC | 2 cut(s) | 399, 501 |
| Eco32I | GATATC | 1 cut(s) | 102 |
| Eco47I | GGWCC | 3 cut(s) | 7, 64, 126 |
| Eco53kI | GAGCTC | 2 cut(s) | 329, 374 |
| Eco57I | CTGAAG | 1 cut(s) | 410 |
| EcoICRI | GAGCTC | 2 cut(s) | 329, 374 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 577 |
| EcoO109I | RGGNCCY | 2 cut(s) | 126, 286 |
| EcoRII | CCWGG | 1 cut(s) | 120 |
| EcoRV | GATATC | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 2 cut(s) | 282, 705 |
| EcoT38I | GRGCYC | 3 cut(s) | 331, 376, 597 |
| ErhI | CCWWGG | 2 cut(s) | 282, 705 |
| FaeI | CATG | 2 cut(s) | 61, 488 |
| FaqI | GGGAC | 1 cut(s) | 112 |
| FatI | CATG | 2 cut(s) | 57, 484 |
| FauNDI | CATATG | 1 cut(s) | 427 |
| FokI | GGATG | 2 cut(s) | 324, 521 |
| FriOI | GRGCYC | 3 cut(s) | 331, 376, 597 |
| FspBI | CTAG | 1 cut(s) | 257 |
| GlaI | GCGC | 1 cut(s) | 36 |
| HaeIII | GGCC | 4 cut(s) | 288, 424, 589, 651 |
| HapII | CCGG | 3 cut(s) | 5, 62, 298 |
| HgaI | GACGC | 1 cut(s) | 41 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1II | CATG | 2 cut(s) | 61, 488 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HinfI | GANTC | 1 cut(s) | 639 |
| HpaII | CCGG | 3 cut(s) | 5, 62, 298 |
| HphI | GGTGA | 2 cut(s) | 7, 64 |
| Hpy166II | GTNNAC | 1 cut(s) | 170 |
| Hpy188I | TCNGA | 3 cut(s) | 249, 404, 536 |
| Hpy188III | TCNNGA | 1 cut(s) | 181 |
| Hpy8I | GTNNAC | 1 cut(s) | 170 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 80 |
| HpyAV | CCTTC | 3 cut(s) | 115, 352, 385 |
| HpyCH4IV | ACGT | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 2 cut(s) | 315, 488 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 365, 601 |
| HpyF3I | CTNAG | 5 cut(s) | 150, 182, 401, 457, 591 |
| HpySE526I | ACGT | 1 cut(s) | 43 |
| Hsp92II | CATG | 2 cut(s) | 61, 488 |
| HspAI | GCGC | 1 cut(s) | 35 |
| KflI | GGGWCCC | 1 cut(s) | 126 |
| Kzo9I | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| LguI | GCTCTTC | 1 cut(s) | 319 |
| LweI | GCATC | 2 cut(s) | 302, 681 |
| MaeI | CTAG | 1 cut(s) | 257 |
| MaeII | ACGT | 1 cut(s) | 43 |
| MaeIII | GTNAC | 1 cut(s) | 598 |
| MalI | GATC | 5 cut(s) | 144, 246, 396, 578, 585 |
| MboI | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| MboII | GAAGA | 7 cut(s) | 100, 168, 206, 336, 620, 667, 716 |
| MflI | RGATCY | 1 cut(s) | 142 |
| MhlI | GDGCHC | 3 cut(s) | 331, 376, 597 |
| MluCI | AATT | 6 cut(s) | 85, 176, 431, 515, 611, 748 |
| MmeI | TCCRAC | 2 cut(s) | 34, 91 |
| MseI | TTAA | 2 cut(s) | 267, 566 |
| MslI | CAYNNNNRTG | 1 cut(s) | 553 |
| MspA1I | CMGCKG | 1 cut(s) | 388 |
| MspI | CCGG | 3 cut(s) | 5, 62, 298 |
| MspR9I | CCNGG | 1 cut(s) | 122 |
| MvaI | CCWGG | 1 cut(s) | 122 |
| MvnI | CGCG | 3 cut(s) | 35, 378, 604 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 365, 601 |
| NdeI | CATATG | 1 cut(s) | 427 |
| NdeII | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| NlaIII | CATG | 2 cut(s) | 61, 488 |
| NlaIV | GGNNCC | 2 cut(s) | 127, 128 |
| NspV | TTCGAA | 1 cut(s) | 345 |
| PciSI | GCTCTTC | 1 cut(s) | 319 |
| PfeI | GAWTC | 1 cut(s) | 639 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 490 |
| PpuMI | RGGWCCY | 1 cut(s) | 126 |
| PshBI | ATTAAT | 1 cut(s) | 267 |
| Psp124BI | GAGCTC | 2 cut(s) | 331, 376 |
| Psp5II | RGGWCCY | 1 cut(s) | 126 |
| Psp6I | CCWGG | 1 cut(s) | 120 |
| PspGI | CCWGG | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 2 cut(s) | 127, 128 |
| PspPI | GGNCC | 5 cut(s) | 7, 64, 126, 286, 650 |
| PspPPI | RGGWCCY | 1 cut(s) | 126 |
| PsuI | RGATCY | 1 cut(s) | 142 |
| PvuII | CAGCTG | 1 cut(s) | 388 |
| RsaI | GTAC | 3 cut(s) | 190, 302, 531 |
| RsaNI | GTAC | 3 cut(s) | 189, 301, 530 |
| RseI | CAYNNNNRTG | 1 cut(s) | 553 |
| SacI | GAGCTC | 2 cut(s) | 331, 376 |
| SapI | GCTCTTC | 1 cut(s) | 319 |
| SaqAI | TTAA | 2 cut(s) | 267, 566 |
| Sau3AI | GATC | 5 cut(s) | 142, 244, 394, 576, 583 |
| Sau96I | GGNCC | 5 cut(s) | 7, 64, 126, 286, 650 |
| ScrFI | CCNGG | 1 cut(s) | 122 |
| SduI | GDGCHC | 3 cut(s) | 331, 376, 597 |
| SetI | ASST | 7 cut(s) | 46, 331, 344, 376, 390, 411, 483 |
| SfaNI | GCATC | 2 cut(s) | 302, 681 |
| SfuI | TTCGAA | 1 cut(s) | 345 |
| SinI | GGWCC | 3 cut(s) | 7, 64, 126 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 553 |
| Sse9I | AATT | 6 cut(s) | 85, 176, 431, 515, 611, 748 |
| SspMI | CTAG | 1 cut(s) | 257 |
| SstI | GAGCTC | 2 cut(s) | 331, 376 |
| StyD4I | CCNGG | 1 cut(s) | 120 |
| StyI | CCWWGG | 2 cut(s) | 282, 705 |
| TaiI | ACGT | 1 cut(s) | 46 |
| TaqI | TCGA | 2 cut(s) | 345, 575 |
| TasI | AATT | 6 cut(s) | 85, 176, 431, 515, 611, 748 |
| TatI | WGTACW | 1 cut(s) | 529 |
| TfiI | GAWTC | 1 cut(s) | 639 |
| Tru1I | TTAA | 2 cut(s) | 267, 566 |
| Tru9I | TTAA | 2 cut(s) | 267, 566 |
| TspDTI | ATGAA | 2 cut(s) | 444, 528 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 490 |
| VpaK11BI | GGWCC | 3 cut(s) | 7, 64, 126 |
| VspI | ATTAAT | 1 cut(s) | 267 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 577 |
| XapI | RAATTY | 2 cut(s) | 431, 515 |
| XspI | CTAG | 1 cut(s) | 257 |