GAG-pre-integrase domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 474, 676 |
| AcuI | CTGAAG | 2 cut(s) | 567, 842 |
| AfaI | GTAC | 3 cut(s) | 61, 265, 386 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 227 |
| AgsI | TTSAA | 7 cut(s) | 137, 183, 212, 295, 515, 682, 709 |
| AjnI | CCWGG | 1 cut(s) | 226 |
| AluBI | AGCT | 3 cut(s) | 84, 587, 770 |
| AluI | AGCT | 3 cut(s) | 84, 587, 770 |
| Alw26I | GTCTC | 3 cut(s) | 250, 402, 648 |
| AoxI | GGCC | 3 cut(s) | 91, 237, 864 |
| ApeKI | GCWGC | 2 cut(s) | 81, 554 |
| ApoI | RAATTY | 2 cut(s) | 474, 676 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 577 |
| AspLEI | GCGC | 1 cut(s) | 824 |
| AspS9I | GGNCC | 2 cut(s) | 230, 419 |
| AsuC2I | CCSGG | 1 cut(s) | 591 |
| AsuHPI | GGTGA | 3 cut(s) | 105, 381, 920 |
| AvaII | GGWCC | 2 cut(s) | 230, 419 |
| BbvI | GCAGC | 2 cut(s) | 93, 541 |
| BccI | CCATC | 4 cut(s) | 37, 754, 790, 856 |
| BceAI | ACGGC | 1 cut(s) | 567 |
| BciT130I | CCWGG | 1 cut(s) | 228 |
| BciVI | GTATCC | 1 cut(s) | 880 |
| BcnI | CCSGG | 1 cut(s) | 591 |
| BcoDI | GTCTC | 3 cut(s) | 250, 402, 648 |
| BfaI | CTAG | 2 cut(s) | 102, 903 |
| BfoI | RGCGCY | 1 cut(s) | 825 |
| BfuI | GTATCC | 1 cut(s) | 880 |
| BisI | GCNGC | 2 cut(s) | 82, 555 |
| BlsI | GCNGC | 2 cut(s) | 83, 556 |
| BmcAI | AGTACT | 1 cut(s) | 386 |
| Bme1390I | CCNGG | 2 cut(s) | 228, 591 |
| Bme18I | GGWCC | 2 cut(s) | 230, 419 |
| BmgT120I | GGNCC | 2 cut(s) | 230, 419 |
| BmiI | GGNNCC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 2 cut(s) | 228, 591 |
| BmsI | GCATC | 1 cut(s) | 422 |
| BpmI | CTGGAG | 2 cut(s) | 66, 639 |
| BpuEI | CTTGAG | 1 cut(s) | 750 |
| BpuMI | CCSGG | 1 cut(s) | 591 |
| BsaJI | CCNNGG | 1 cut(s) | 234 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 763, 793 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 227 |
| Bse1I | ACTGG | 4 cut(s) | 49, 640, 667, 901 |
| BseBI | CCWGG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 234 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BseMII | CTCAG | 4 cut(s) | 122, 161, 218, 407 |
| BseNI | ACTGG | 4 cut(s) | 49, 640, 667, 901 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 93, 541 |
| BsgI | GTGCAG | 1 cut(s) | 771 |
| BshFI | GGCC | 3 cut(s) | 93, 239, 866 |
| BsiSI | CCGG | 2 cut(s) | 590, 819 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BsmAI | GTCTC | 3 cut(s) | 250, 402, 648 |
| BsmI | GAATGC | 1 cut(s) | 406 |
| BsnI | GGCC | 3 cut(s) | 93, 239, 866 |
| Bsp143I | GATC | 2 cut(s) | 435, 919 |
| BspANI | GGCC | 3 cut(s) | 93, 239, 866 |
| BspCNI | CTCAG | 4 cut(s) | 121, 160, 217, 406 |
| BspLI | GGNNCC | 1 cut(s) | 232 |
| BsrI | ACTGG | 4 cut(s) | 49, 640, 667, 901 |
| BssECI | CCNNGG | 1 cut(s) | 234 |
| BssMI | GATC | 2 cut(s) | 435, 919 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 4 cut(s) | 351, 363, 636, 892 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 1 cut(s) | 701 |
| BstDEI | CTNAG | 5 cut(s) | 63, 108, 147, 204, 393 |
| BstH2I | RGCGCY | 1 cut(s) | 825 |
| BstHHI | GCGC | 1 cut(s) | 824 |
| BstKTI | GATC | 2 cut(s) | 438, 922 |
| BstMAI | GTCTC | 3 cut(s) | 250, 402, 648 |
| BstMBI | GATC | 2 cut(s) | 435, 919 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 90, 761 |
| BstNI | CCWGG | 1 cut(s) | 228 |
| BstNSI | RCATGY | 1 cut(s) | 703 |
| BstSCI | CCNGG | 2 cut(s) | 226, 589 |
| BstV1I | GCAGC | 2 cut(s) | 93, 541 |
| BsuI | GTATCC | 1 cut(s) | 880 |
| BsuRI | GGCC | 3 cut(s) | 93, 239, 866 |
| BtsIMutI | CAGTG | 3 cut(s) | 42, 894, 922 |
| Cac8I | GCNNGC | 1 cut(s) | 701 |
| CfoI | GCGC | 1 cut(s) | 824 |
| Cfr13I | GGNCC | 2 cut(s) | 230, 419 |
| Csp6I | GTAC | 3 cut(s) | 60, 264, 385 |
| CviAII | CATG | 4 cut(s) | 518, 700, 727, 835 |
| CviQI | GTAC | 3 cut(s) | 60, 264, 385 |
| DdeI | CTNAG | 5 cut(s) | 63, 108, 147, 204, 393 |
| DpnI | GATC | 2 cut(s) | 437, 921 |
| DpnII | GATC | 2 cut(s) | 435, 919 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco32I | GATATC | 1 cut(s) | 596 |
| Eco47I | GGWCC | 2 cut(s) | 230, 419 |
| Eco57I | CTGAAG | 2 cut(s) | 567, 842 |
| EcoRII | CCWGG | 1 cut(s) | 226 |
| EcoRV | GATATC | 1 cut(s) | 596 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| EcoT22I | ATGCAT | 1 cut(s) | 705 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 4 cut(s) | 521, 703, 730, 838 |
| FatI | CATG | 4 cut(s) | 517, 699, 726, 834 |
| FauNDI | CATATG | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 555 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 555 |
| FspBI | CTAG | 2 cut(s) | 102, 903 |
| GlaI | GCGC | 1 cut(s) | 823 |
| GluI | GCNGC | 2 cut(s) | 82, 555 |
| GsuI | CTGGAG | 2 cut(s) | 66, 639 |
| HaeII | RGCGCY | 1 cut(s) | 825 |
| HaeIII | GGCC | 3 cut(s) | 93, 239, 866 |
| HapII | CCGG | 2 cut(s) | 590, 819 |
| HhaI | GCGC | 1 cut(s) | 824 |
| Hin1II | CATG | 4 cut(s) | 521, 703, 730, 838 |
| Hin6I | GCGC | 1 cut(s) | 822 |
| HinP1I | GCGC | 1 cut(s) | 822 |
| HinfI | GANTC | 1 cut(s) | 815 |
| HpaII | CCGG | 2 cut(s) | 590, 819 |
| HphI | GGTGA | 3 cut(s) | 105, 381, 920 |
| Hpy188I | TCNGA | 4 cut(s) | 281, 528, 844, 861 |
| Hpy188III | TCNNGA | 2 cut(s) | 417, 812 |
| HpyAV | CCTTC | 2 cut(s) | 62, 905 |
| HpyCH4III | ACNGT | 4 cut(s) | 351, 363, 636, 892 |
| HpyCH4V | TGCA | 5 cut(s) | 35, 463, 557, 703, 788 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 90, 761 |
| HpyF3I | CTNAG | 5 cut(s) | 63, 108, 147, 204, 393 |
| Hsp92II | CATG | 4 cut(s) | 521, 703, 730, 838 |
| HspAI | GCGC | 1 cut(s) | 822 |
| Kzo9I | GATC | 2 cut(s) | 435, 919 |
| LmnI | GCTCC | 1 cut(s) | 592 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 541 |
| LweI | GCATC | 1 cut(s) | 422 |
| MaeI | CTAG | 2 cut(s) | 102, 903 |
| MaeIII | GTNAC | 3 cut(s) | 111, 491, 892 |
| MalI | GATC | 2 cut(s) | 437, 921 |
| MboI | GATC | 2 cut(s) | 435, 919 |
| MboII | GAAGA | 4 cut(s) | 125, 573, 729, 848 |
| MfeI | CAATTG | 1 cut(s) | 505 |
| MluCI | AATT | 8 cut(s) | 22, 191, 274, 289, 474, 505, 577, 676 |
| MlyI | GAGTC | 1 cut(s) | 809 |
| Mph1103I | ATGCAT | 1 cut(s) | 705 |
| MroXI | GAANNNNTTC | 1 cut(s) | 577 |
| MslI | CAYNNNNRTG | 1 cut(s) | 708 |
| MspI | CCGG | 2 cut(s) | 590, 819 |
| MspR9I | CCNGG | 2 cut(s) | 228, 591 |
| MunI | CAATTG | 1 cut(s) | 505 |
| Mva1269I | GAATGC | 1 cut(s) | 406 |
| MvaI | CCWGG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 90, 761 |
| NciI | CCSGG | 1 cut(s) | 591 |
| NdeI | CATATG | 1 cut(s) | 37 |
| NdeII | GATC | 2 cut(s) | 435, 919 |
| NlaIII | CATG | 4 cut(s) | 521, 703, 730, 838 |
| NlaIV | GGNNCC | 1 cut(s) | 232 |
| NmuCI | GTSAC | 3 cut(s) | 111, 491, 892 |
| NsiI | ATGCAT | 1 cut(s) | 705 |
| NspI | RCATGY | 1 cut(s) | 703 |
| PaeI | GCATGC | 1 cut(s) | 703 |
| PctI | GAATGC | 1 cut(s) | 406 |
| PdmI | GAANNNNTTC | 1 cut(s) | 577 |
| PfoI | TCCNGGA | 2 cut(s) | 226, 589 |
| PkrI | GCNGC | 2 cut(s) | 83, 556 |
| PleI | GAGTC | 1 cut(s) | 809 |
| PpsI | GAGTC | 1 cut(s) | 809 |
| Psp6I | CCWGG | 1 cut(s) | 226 |
| PspGI | CCWGG | 1 cut(s) | 226 |
| PspN4I | GGNNCC | 1 cut(s) | 232 |
| PspPI | GGNCC | 2 cut(s) | 230, 419 |
| RsaI | GTAC | 3 cut(s) | 61, 265, 386 |
| RsaNI | GTAC | 3 cut(s) | 60, 264, 385 |
| RseI | CAYNNNNRTG | 1 cut(s) | 708 |
| SatI | GCNGC | 2 cut(s) | 82, 555 |
| Sau3AI | GATC | 2 cut(s) | 435, 919 |
| Sau96I | GGNCC | 2 cut(s) | 230, 419 |
| ScaI | AGTACT | 1 cut(s) | 386 |
| SchI | GAGTC | 1 cut(s) | 809 |
| ScrFI | CCNGG | 2 cut(s) | 228, 591 |
| SfaNI | GCATC | 1 cut(s) | 422 |
| SinI | GGWCC | 2 cut(s) | 230, 419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 708 |
| SmlI | CTYRAG | 1 cut(s) | 765 |
| SmoI | CTYRAG | 1 cut(s) | 765 |
| SphI | GCATGC | 1 cut(s) | 703 |
| Sse9I | AATT | 8 cut(s) | 22, 191, 274, 289, 474, 505, 577, 676 |
| SspMI | CTAG | 2 cut(s) | 102, 903 |
| StyD4I | CCNGG | 2 cut(s) | 226, 589 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaaI | ACNGT | 4 cut(s) | 351, 363, 636, 892 |
| TasI | AATT | 8 cut(s) | 22, 191, 274, 289, 474, 505, 577, 676 |
| TatI | WGTACW | 1 cut(s) | 384 |
| TscAI | CASTG | 2 cut(s) | 49, 901 |
| TseFI | GTSAC | 3 cut(s) | 111, 491, 892 |
| TseI | GCWGC | 2 cut(s) | 81, 554 |
| Tsp45I | GTSAC | 3 cut(s) | 111, 491, 892 |
| TspDTI | ATGAA | 2 cut(s) | 63, 689 |
| TspGWI | ACGGA | 1 cut(s) | 899 |
| TspRI | CASTG | 2 cut(s) | 49, 901 |
| VpaK11BI | GGWCC | 2 cut(s) | 230, 419 |
| XapI | RAATTY | 2 cut(s) | 474, 676 |
| XceI | RCATGY | 1 cut(s) | 703 |
| XmnI | GAANNNNTTC | 1 cut(s) | 577 |
| XspI | CTAG | 2 cut(s) | 102, 903 |
| ZrmI | AGTACT | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 1 cut(s) | 705 |