GAG-pre-integrase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 536 |
| AccI | GTMKAC | 1 cut(s) | 587 |
| AclWI | GGATC | 1 cut(s) | 397 |
| AcsI | RAATTY | 2 cut(s) | 113, 483 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AgsI | TTSAA | 6 cut(s) | 158, 294, 361, 383, 424, 461 |
| AluBI | AGCT | 3 cut(s) | 222, 245, 596 |
| AluI | AGCT | 3 cut(s) | 222, 245, 596 |
| Alw26I | GTCTC | 3 cut(s) | 37, 47, 506 |
| AlwI | GGATC | 1 cut(s) | 397 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 35 |
| AoxI | GGCC | 1 cut(s) | 97 |
| ApoI | RAATTY | 2 cut(s) | 113, 483 |
| BbsI | GAAGAC | 1 cut(s) | 165 |
| BccI | CCATC | 1 cut(s) | 116 |
| BclI | TGATCA | 1 cut(s) | 237 |
| BcoDI | GTCTC | 3 cut(s) | 37, 47, 506 |
| BfaI | CTAG | 2 cut(s) | 272, 525 |
| BfmI | CTRYAG | 1 cut(s) | 399 |
| BmsI | GCATC | 3 cut(s) | 69, 250, 272 |
| BpiI | GAAGAC | 1 cut(s) | 165 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 1 cut(s) | 100 |
| BseGI | GGATG | 1 cut(s) | 287 |
| BseMII | CTCAG | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 99 |
| BsmAI | GTCTC | 3 cut(s) | 37, 47, 506 |
| BsnI | GGCC | 1 cut(s) | 99 |
| Bso31I | GGTCTC | 1 cut(s) | 506 |
| Bsp143I | GATC | 3 cut(s) | 237, 389, 469 |
| Bsp19I | CCATGG | 1 cut(s) | 100 |
| BspANI | GGCC | 1 cut(s) | 99 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspPI | GGATC | 1 cut(s) | 397 |
| BspTNI | GGTCTC | 1 cut(s) | 506 |
| BssECI | CCNNGG | 1 cut(s) | 100 |
| BssMI | GATC | 3 cut(s) | 237, 389, 469 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| Bst4CI | ACNGT | 2 cut(s) | 23, 585 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 166 |
| BstDEI | CTNAG | 3 cut(s) | 144, 314, 431 |
| BstDSI | CCRYGG | 1 cut(s) | 100 |
| BstF5I | GGATG | 1 cut(s) | 287 |
| BstKTI | GATC | 3 cut(s) | 240, 392, 472 |
| BstMAI | GTCTC | 3 cut(s) | 37, 47, 506 |
| BstMBI | GATC | 3 cut(s) | 237, 389, 469 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 199 |
| BstSFI | CTRYAG | 1 cut(s) | 399 |
| BstV2I | GAAGAC | 1 cut(s) | 165 |
| BstX2I | RGATCY | 1 cut(s) | 389 |
| BstYI | RGATCY | 1 cut(s) | 389 |
| BsuRI | GGCC | 1 cut(s) | 99 |
| BtgI | CCRYGG | 1 cut(s) | 100 |
| BtsCI | GGATG | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 166 |
| CaiI | CAGNNNCTG | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 170 |
| CviAII | CATG | 1 cut(s) | 101 |
| CviJI | RGCY | 5 cut(s) | 99, 193, 222, 245, 596 |
| CviKI_1 | RGCY | 5 cut(s) | 99, 193, 222, 245, 596 |
| DdeI | CTNAG | 3 cut(s) | 144, 314, 431 |
| DpnI | GATC | 3 cut(s) | 239, 391, 471 |
| DpnII | GATC | 3 cut(s) | 237, 389, 469 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| Eco31I | GGTCTC | 1 cut(s) | 506 |
| Eco32I | GATATC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| EcoRV | GATATC | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| FaeI | CATG | 1 cut(s) | 104 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 353, 385 |
| FatI | CATG | 1 cut(s) | 100 |
| FbaI | TGATCA | 1 cut(s) | 237 |
| FblI | GTMKAC | 1 cut(s) | 587 |
| FokI | GGATG | 1 cut(s) | 294 |
| FspBI | CTAG | 2 cut(s) | 272, 525 |
| HaeIII | GGCC | 1 cut(s) | 99 |
| HgaI | GACGC | 1 cut(s) | 170 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 104 |
| HindIII | AAGCTT | 1 cut(s) | 594 |
| HinfI | GANTC | 1 cut(s) | 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 588 |
| Hpy188I | TCNGA | 4 cut(s) | 78, 181, 340, 394 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 588 |
| HpyAV | CCTTC | 1 cut(s) | 150 |
| HpyCH4III | ACNGT | 2 cut(s) | 23, 585 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 82, 263, 452 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 199 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 314, 431 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 1 cut(s) | 104 |
| Ksp22I | TGATCA | 1 cut(s) | 237 |
| Kzo9I | GATC | 3 cut(s) | 237, 389, 469 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 4 cut(s) | 150, 174, 438, 483 |
| LweI | GCATC | 3 cut(s) | 69, 250, 272 |
| MaeI | CTAG | 2 cut(s) | 272, 525 |
| MaeIII | GTNAC | 1 cut(s) | 414 |
| MalI | GATC | 3 cut(s) | 239, 391, 471 |
| MboI | GATC | 3 cut(s) | 237, 389, 469 |
| MboII | GAAGA | 4 cut(s) | 83, 168, 170, 575 |
| MflI | RGATCY | 1 cut(s) | 389 |
| MluCI | AATT | 7 cut(s) | 55, 113, 184, 333, 356, 483, 531 |
| MmeI | TCCRAC | 2 cut(s) | 189, 390 |
| MnlI | CCTC | 4 cut(s) | 89, 292, 469, 564 |
| MseI | TTAA | 2 cut(s) | 480, 598 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 199 |
| NcoI | CCATGG | 1 cut(s) | 100 |
| NdeII | GATC | 3 cut(s) | 237, 389, 469 |
| NlaIII | CATG | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 395 |
| PsiI | TTATAA | 1 cut(s) | 536 |
| PstNI | CAGNNNCTG | 1 cut(s) | 35 |
| PsuI | RGATCY | 1 cut(s) | 389 |
| SaqAI | TTAA | 2 cut(s) | 480, 598 |
| Sau3AI | GATC | 3 cut(s) | 237, 389, 469 |
| SetI | ASST | 6 cut(s) | 224, 247, 303, 480, 575, 598 |
| SfaNI | GCATC | 3 cut(s) | 69, 250, 272 |
| SfcI | CTRYAG | 1 cut(s) | 399 |
| Sse9I | AATT | 7 cut(s) | 55, 113, 184, 333, 356, 483, 531 |
| SspMI | CTAG | 2 cut(s) | 272, 525 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 2 cut(s) | 23, 585 |
| TaqI | TCGA | 2 cut(s) | 45, 94 |
| TasI | AATT | 7 cut(s) | 55, 113, 184, 333, 356, 483, 531 |
| TfiI | GAWTC | 1 cut(s) | 395 |
| Tru1I | TTAA | 2 cut(s) | 480, 598 |
| Tru9I | TTAA | 2 cut(s) | 480, 598 |
| TspDTI | ATGAA | 2 cut(s) | 335, 368 |
| XapI | RAATTY | 2 cut(s) | 113, 483 |
| XmiI | GTMKAC | 1 cut(s) | 587 |
| XspI | CTAG | 2 cut(s) | 272, 525 |