transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 1 - 61 | 6.5e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 3 cut(s) | 21, 193, 318 |
| AclWI | GGATC | 1 cut(s) | 355 |
| AcoI | YGGCCR | 1 cut(s) | 502 |
| AfaI | GTAC | 1 cut(s) | 209 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 370 |
| AgsI | TTSAA | 2 cut(s) | 164, 295 |
| AluBI | AGCT | 4 cut(s) | 113, 142, 187, 454 |
| AluI | AGCT | 4 cut(s) | 113, 142, 187, 454 |
| Alw26I | GTCTC | 2 cut(s) | 33, 464 |
| AlwI | GGATC | 1 cut(s) | 355 |
| Ama87I | CYCGRG | 1 cut(s) | 414 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| AoxI | GGCC | 1 cut(s) | 502 |
| ApeKI | GCWGC | 2 cut(s) | 142, 454 |
| AspLEI | GCGC | 1 cut(s) | 413 |
| AsuC2I | CCSGG | 4 cut(s) | 25, 269, 415, 416 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 460 |
| AvaI | CYCGRG | 1 cut(s) | 414 |
| BalI | TGGCCA | 1 cut(s) | 504 |
| BbvI | GCAGC | 2 cut(s) | 129, 441 |
| BccI | CCATC | 2 cut(s) | 113, 523 |
| BcnI | CCSGG | 4 cut(s) | 25, 269, 415, 416 |
| BcoDI | GTCTC | 2 cut(s) | 33, 464 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| BisI | GCNGC | 3 cut(s) | 21, 143, 455 |
| BlsI | GCNGC | 3 cut(s) | 22, 144, 456 |
| Bme1390I | CCNGG | 4 cut(s) | 25, 269, 415, 416 |
| BmeT110I | CYCGRG | 1 cut(s) | 414 |
| BmrFI | CCNGG | 4 cut(s) | 25, 269, 415, 416 |
| BmsI | GCATC | 1 cut(s) | 79 |
| BoxI | GACNNNNGTC | 1 cut(s) | 76 |
| BpmI | CTGGAG | 1 cut(s) | 117 |
| BpuEI | CTTGAG | 1 cut(s) | 391 |
| BpuMI | CCSGG | 4 cut(s) | 25, 269, 415, 416 |
| Bsa29I | ATCGAT | 1 cut(s) | 350 |
| BsaI | GGTCTC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 3 cut(s) | 304, 369, 414 |
| BsaWI | WCCGGW | 2 cut(s) | 31, 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 370 |
| Bse1I | ACTGG | 1 cut(s) | 159 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseCI | ATCGAT | 1 cut(s) | 350 |
| BseDI | CCNNGG | 3 cut(s) | 304, 369, 414 |
| BseGI | GGATG | 3 cut(s) | 246, 264, 300 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseNI | ACTGG | 1 cut(s) | 159 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BseXI | GCAGC | 2 cut(s) | 129, 441 |
| Bsh1285I | CGRYCG | 1 cut(s) | 223 |
| BshFI | GGCC | 1 cut(s) | 504 |
| BshVI | ATCGAT | 1 cut(s) | 350 |
| BsiEI | CGRYCG | 1 cut(s) | 223 |
| BsiHKCI | CYCGRG | 1 cut(s) | 414 |
| BsiSI | CCGG | 6 cut(s) | 24, 32, 250, 269, 345, 415 |
| BslFI | GGGAC | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BsmAI | GTCTC | 2 cut(s) | 33, 464 |
| BsmBI | CGTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 1 cut(s) | 431 |
| BsnI | GGCC | 1 cut(s) | 504 |
| Bso31I | GGTCTC | 1 cut(s) | 33 |
| BsoBI | CYCGRG | 1 cut(s) | 414 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 3 cut(s) | 220, 347, 351 |
| BspACI | CCGC | 3 cut(s) | 21, 193, 318 |
| BspANI | GGCC | 1 cut(s) | 504 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspDI | ATCGAT | 1 cut(s) | 350 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspPI | GGATC | 1 cut(s) | 355 |
| BspTNI | GGTCTC | 1 cut(s) | 33 |
| BsrI | ACTGG | 1 cut(s) | 159 |
| BssECI | CCNNGG | 3 cut(s) | 304, 369, 414 |
| BssMI | GATC | 3 cut(s) | 220, 347, 351 |
| BssT1I | CCWWGG | 1 cut(s) | 304 |
| Bst4CI | ACNGT | 2 cut(s) | 199, 422 |
| Bst6I | CTCTTC | 1 cut(s) | 296 |
| BstDEI | CTNAG | 2 cut(s) | 81, 464 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 368 |
| BstF5I | GGATG | 3 cut(s) | 246, 264, 300 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 1 cut(s) | 413 |
| BstKTI | GATC | 3 cut(s) | 223, 350, 354 |
| BstMAI | GTCTC | 2 cut(s) | 33, 464 |
| BstMBI | GATC | 3 cut(s) | 220, 347, 351 |
| BstMCI | CGRYCG | 1 cut(s) | 223 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 76 |
| BstSCI | CCNGG | 4 cut(s) | 23, 267, 413, 414 |
| BstV1I | GCAGC | 2 cut(s) | 129, 441 |
| Bsu15I | ATCGAT | 1 cut(s) | 350 |
| BsuRI | GGCC | 1 cut(s) | 504 |
| BsuTUI | ATCGAT | 1 cut(s) | 350 |
| BtsCI | GGATG | 3 cut(s) | 246, 264, 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| CfoI | GCGC | 1 cut(s) | 413 |
| Cfr9I | CCCGGG | 1 cut(s) | 414 |
| ClaI | ATCGAT | 1 cut(s) | 350 |
| Csp6I | GTAC | 1 cut(s) | 208 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviQI | GTAC | 1 cut(s) | 208 |
| DdeI | CTNAG | 2 cut(s) | 81, 464 |
| DpnI | GATC | 3 cut(s) | 222, 349, 353 |
| DpnII | GATC | 3 cut(s) | 220, 347, 351 |
| EaeI | YGGCCR | 1 cut(s) | 502 |
| Eam1104I | CTCTTC | 1 cut(s) | 296 |
| EarI | CTCTTC | 1 cut(s) | 296 |
| Eco130I | CCWWGG | 1 cut(s) | 304 |
| Eco31I | GGTCTC | 1 cut(s) | 33 |
| Eco88I | CYCGRG | 1 cut(s) | 414 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 368 |
| EcoT14I | CCWWGG | 1 cut(s) | 304 |
| ErhI | CCWWGG | 1 cut(s) | 304 |
| Esp3I | CGTCTC | 1 cut(s) | 464 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaqI | GGGAC | 1 cut(s) | 431 |
| FatI | CATG | 1 cut(s) | 145 |
| FauNDI | CATATG | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 3 cut(s) | 21, 143, 455 |
| FokI | GGATG | 3 cut(s) | 233, 251, 287 |
| Fsp4HI | GCNGC | 3 cut(s) | 21, 143, 455 |
| GlaI | GCGC | 1 cut(s) | 412 |
| GluI | GCNGC | 3 cut(s) | 21, 143, 455 |
| GsuI | CTGGAG | 1 cut(s) | 117 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HaeIII | GGCC | 1 cut(s) | 504 |
| HapII | CCGG | 6 cut(s) | 24, 32, 250, 269, 345, 415 |
| HhaI | GCGC | 1 cut(s) | 413 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 1 cut(s) | 411 |
| HinP1I | GCGC | 1 cut(s) | 411 |
| HinfI | GANTC | 2 cut(s) | 167, 226 |
| HpaII | CCGG | 6 cut(s) | 24, 32, 250, 269, 345, 415 |
| HphI | GGTGA | 2 cut(s) | 221, 460 |
| Hpy188I | TCNGA | 3 cut(s) | 82, 225, 370 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 250 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 2 cut(s) | 199, 422 |
| HpyCH4IV | ACGT | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 145, 457 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 464 |
| HpySE526I | ACGT | 1 cut(s) | 260 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 1 cut(s) | 411 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 3 cut(s) | 220, 347, 351 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| LpnPI | CCDG | 9 cut(s) | 37, 45, 99, 140, 147, 263, 282, 358, 428 |
| Lsp1109I | GCAGC | 2 cut(s) | 129, 441 |
| LweI | GCATC | 1 cut(s) | 79 |
| MaeII | ACGT | 1 cut(s) | 260 |
| MalI | GATC | 3 cut(s) | 222, 349, 353 |
| MboI | GATC | 3 cut(s) | 220, 347, 351 |
| MboII | GAAGA | 2 cut(s) | 176, 283 |
| MlsI | TGGCCA | 1 cut(s) | 504 |
| MluCI | AATT | 1 cut(s) | 117 |
| MluNI | TGGCCA | 1 cut(s) | 504 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MnlI | CCTC | 3 cut(s) | 130, 299, 364 |
| Mox20I | TGGCCA | 1 cut(s) | 504 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MscI | TGGCCA | 1 cut(s) | 504 |
| MseI | TTAA | 3 cut(s) | 66, 128, 276 |
| Msp20I | TGGCCA | 1 cut(s) | 504 |
| MspI | CCGG | 6 cut(s) | 24, 32, 250, 269, 345, 415 |
| MspR9I | CCNGG | 4 cut(s) | 25, 269, 415, 416 |
| NciI | CCSGG | 4 cut(s) | 25, 269, 415, 416 |
| NdeI | CATATG | 1 cut(s) | 340 |
| NdeII | GATC | 3 cut(s) | 220, 347, 351 |
| NlaIII | CATG | 1 cut(s) | 149 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 216, 229 |
| PfeI | GAWTC | 1 cut(s) | 167 |
| PkrI | GCNGC | 3 cut(s) | 22, 144, 456 |
| Ple19I | CGATCG | 1 cut(s) | 223 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PshAI | GACNNNNGTC | 1 cut(s) | 76 |
| PvuI | CGATCG | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 209 |
| RsaNI | GTAC | 1 cut(s) | 208 |
| SaqAI | TTAA | 3 cut(s) | 66, 128, 276 |
| SatI | GCNGC | 3 cut(s) | 21, 143, 455 |
| Sau3AI | GATC | 3 cut(s) | 220, 347, 351 |
| SchI | GAGTC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 4 cut(s) | 25, 269, 415, 416 |
| SetI | ASST | 7 cut(s) | 115, 144, 189, 263, 284, 291, 456 |
| SfaNI | GCATC | 1 cut(s) | 79 |
| SmaI | CCCGGG | 1 cut(s) | 416 |
| SmlI | CTYRAG | 1 cut(s) | 406 |
| SmoI | CTYRAG | 1 cut(s) | 406 |
| Sse9I | AATT | 1 cut(s) | 117 |
| SsiI | CCGC | 3 cut(s) | 21, 193, 318 |
| StyD4I | CCNGG | 4 cut(s) | 23, 267, 413, 414 |
| StyI | CCWWGG | 1 cut(s) | 304 |
| TaaI | ACNGT | 2 cut(s) | 199, 422 |
| TaiI | ACGT | 1 cut(s) | 263 |
| TaqI | TCGA | 1 cut(s) | 350 |
| TasI | AATT | 1 cut(s) | 117 |
| TauI | GCSGC | 1 cut(s) | 23 |
| TfiI | GAWTC | 1 cut(s) | 167 |
| Tru1I | TTAA | 3 cut(s) | 66, 128, 276 |
| Tru9I | TTAA | 3 cut(s) | 66, 128, 276 |
| TscAI | CASTG | 1 cut(s) | 202 |
| TseI | GCWGC | 2 cut(s) | 142, 454 |
| TspDTI | ATGAA | 1 cut(s) | 253 |
| TspGWI | ACGGA | 2 cut(s) | 66, 84 |
| TspMI | CCCGGG | 1 cut(s) | 414 |
| TspRI | CASTG | 1 cut(s) | 202 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 368 |
| XmaI | CCCGGG | 1 cut(s) | 414 |