gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 555 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 520 |
| AciI | CCGC | 3 cut(s) | 96, 254, 327 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AcsI | RAATTY | 2 cut(s) | 221, 613 |
| AcuI | CTGAAG | 1 cut(s) | 612 |
| AcyI | GRCGYC | 1 cut(s) | 552 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 520 |
| AgsI | TTSAA | 3 cut(s) | 88, 368, 583 |
| AjiI | CACGTC | 1 cut(s) | 354 |
| AjnI | CCWGG | 2 cut(s) | 519, 606 |
| AluBI | AGCT | 4 cut(s) | 241, 324, 386, 416 |
| AluI | AGCT | 4 cut(s) | 241, 324, 386, 416 |
| Alw21I | GWGCWC | 2 cut(s) | 243, 326 |
| Alw26I | GTCTC | 4 cut(s) | 280, 305, 401, 495 |
| AlwI | GGATC | 1 cut(s) | 157 |
| Ama87I | CYCGRG | 1 cut(s) | 479 |
| AoxI | GGCC | 3 cut(s) | 298, 333, 504 |
| ApeKI | GCWGC | 1 cut(s) | 416 |
| ApoI | RAATTY | 2 cut(s) | 221, 613 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 4 cut(s) | 299, 334, 467, 505 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 509 |
| AvaI | CYCGRG | 1 cut(s) | 479 |
| AvaII | GGWCC | 1 cut(s) | 467 |
| BanII | GRGCYC | 2 cut(s) | 243, 326 |
| Bbv12I | GWGCWC | 2 cut(s) | 243, 326 |
| BbvCI | CCTCAGC | 1 cut(s) | 471 |
| BbvI | GCAGC | 1 cut(s) | 403 |
| BccI | CCATC | 4 cut(s) | 53, 164, 456, 522 |
| BciT130I | CCWGG | 2 cut(s) | 521, 608 |
| BciVI | GTATCC | 1 cut(s) | 559 |
| BclI | TGATCA | 1 cut(s) | 675 |
| BcoDI | GTCTC | 4 cut(s) | 280, 305, 401, 495 |
| BfaI | CTAG | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 559 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 207 |
| BisI | GCNGC | 2 cut(s) | 255, 417 |
| BlpI | GCTNAGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 2 cut(s) | 256, 418 |
| Bme1390I | CCNGG | 2 cut(s) | 521, 608 |
| Bme18I | GGWCC | 1 cut(s) | 467 |
| BmeT110I | CYCGRG | 1 cut(s) | 479 |
| BmgBI | CACGTC | 1 cut(s) | 354 |
| BmgT120I | GGNCC | 4 cut(s) | 299, 334, 467, 505 |
| BmiI | GGNNCC | 1 cut(s) | 468 |
| BmrFI | CCNGG | 2 cut(s) | 521, 608 |
| BmsI | GCATC | 3 cut(s) | 357, 418, 484 |
| BoxI | GACNNNNGTC | 1 cut(s) | 692 |
| Bpu10I | CCTNAGC | 1 cut(s) | 471 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 387 |
| BpuEI | CTTGAG | 1 cut(s) | 135 |
| BsaHI | GRCGYC | 1 cut(s) | 552 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 3 cut(s) | 462, 520, 606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 520 |
| Bse118I | RCCGGY | 1 cut(s) | 101 |
| BseBI | CCWGG | 2 cut(s) | 521, 608 |
| BseDI | CCNNGG | 3 cut(s) | 462, 520, 606 |
| BseGI | GGATG | 2 cut(s) | 58, 510 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseMII | CTCAG | 3 cut(s) | 378, 466, 485 |
| BseXI | GCAGC | 1 cut(s) | 403 |
| BshFI | GGCC | 3 cut(s) | 300, 335, 506 |
| BsiHKAI | GWGCWC | 2 cut(s) | 243, 326 |
| BsiHKCI | CYCGRG | 1 cut(s) | 479 |
| BsiSI | CCGG | 1 cut(s) | 102 |
| BslFI | GGGAC | 1 cut(s) | 537 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BsmAI | GTCTC | 4 cut(s) | 280, 305, 401, 495 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 1 cut(s) | 537 |
| BsmI | GAATGC | 1 cut(s) | 131 |
| BsnI | GGCC | 3 cut(s) | 300, 335, 506 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| BsoBI | CYCGRG | 1 cut(s) | 479 |
| Bsp1286I | GDGCHC | 2 cut(s) | 243, 326 |
| Bsp143I | GATC | 3 cut(s) | 162, 279, 675 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 387 |
| BspACI | CCGC | 3 cut(s) | 96, 254, 327 |
| BspANI | GGCC | 3 cut(s) | 300, 335, 506 |
| BspCNI | CTCAG | 3 cut(s) | 379, 465, 484 |
| BspLI | GGNNCC | 1 cut(s) | 468 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrFI | RCCGGY | 1 cut(s) | 101 |
| BssAI | RCCGGY | 1 cut(s) | 101 |
| BssECI | CCNNGG | 3 cut(s) | 462, 520, 606 |
| BssMI | GATC | 3 cut(s) | 162, 279, 675 |
| BssNI | GRCGYC | 1 cut(s) | 552 |
| Bst2UI | CCWGG | 2 cut(s) | 521, 608 |
| Bst4CI | ACNGT | 2 cut(s) | 206, 319 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstACI | GRCGYC | 1 cut(s) | 552 |
| BstC8I | GCNNGC | 1 cut(s) | 212 |
| BstDEI | CTNAG | 3 cut(s) | 387, 452, 471 |
| BstF5I | GGATG | 2 cut(s) | 58, 510 |
| BstKTI | GATC | 3 cut(s) | 165, 282, 678 |
| BstMAI | GTCTC | 4 cut(s) | 280, 305, 401, 495 |
| BstMBI | GATC | 3 cut(s) | 162, 279, 675 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 81, 207 |
| BstNI | CCWGG | 2 cut(s) | 521, 608 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 692 |
| BstSCI | CCNGG | 2 cut(s) | 519, 606 |
| BstV1I | GCAGC | 1 cut(s) | 403 |
| BsuI | GTATCC | 1 cut(s) | 559 |
| BsuRI | GGCC | 3 cut(s) | 300, 335, 506 |
| BtrI | CACGTC | 1 cut(s) | 354 |
| BtsCI | GGATG | 2 cut(s) | 58, 510 |
| BtsIMutI | CAGTG | 2 cut(s) | 202, 315 |
| Cac8I | GCNNGC | 1 cut(s) | 212 |
| Cfr10I | RCCGGY | 1 cut(s) | 101 |
| Cfr13I | GGNCC | 4 cut(s) | 299, 334, 467, 505 |
| CseI | GACGC | 1 cut(s) | 380 |
| DdeI | CTNAG | 3 cut(s) | 387, 452, 471 |
| DpnI | GATC | 3 cut(s) | 164, 281, 677 |
| DpnII | GATC | 3 cut(s) | 162, 279, 675 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| Ecl136II | GAGCTC | 2 cut(s) | 241, 324 |
| Eco24I | GRGCYC | 2 cut(s) | 243, 326 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco47I | GGWCC | 1 cut(s) | 467 |
| Eco53kI | GAGCTC | 2 cut(s) | 241, 324 |
| Eco57I | CTGAAG | 1 cut(s) | 612 |
| Eco88I | CYCGRG | 1 cut(s) | 479 |
| EcoICRI | GAGCTC | 2 cut(s) | 241, 324 |
| EcoO109I | RGGNCCY | 2 cut(s) | 299, 467 |
| EcoRII | CCWGG | 2 cut(s) | 519, 606 |
| EcoT38I | GRGCYC | 2 cut(s) | 243, 326 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FaiI | YATR | 7 cut(s) | 287, 309, 443, 543, 624, 704, 706 |
| FaqI | GGGAC | 1 cut(s) | 537 |
| FbaI | TGATCA | 1 cut(s) | 675 |
| Fnu4HI | GCNGC | 2 cut(s) | 255, 417 |
| FokI | GGATG | 2 cut(s) | 65, 497 |
| FriOI | GRGCYC | 2 cut(s) | 243, 326 |
| Fsp4HI | GCNGC | 2 cut(s) | 255, 417 |
| FspBI | CTAG | 1 cut(s) | 560 |
| GluI | GCNGC | 2 cut(s) | 255, 417 |
| HaeIII | GGCC | 3 cut(s) | 300, 335, 506 |
| HapII | CCGG | 1 cut(s) | 102 |
| HgaI | GACGC | 1 cut(s) | 380 |
| Hin1I | GRCGYC | 1 cut(s) | 552 |
| HinfI | GANTC | 2 cut(s) | 124, 668 |
| HpaII | CCGG | 1 cut(s) | 102 |
| HphI | GGTGA | 2 cut(s) | 133, 509 |
| Hpy188I | TCNGA | 5 cut(s) | 28, 263, 358, 550, 631 |
| Hpy188III | TCNNGA | 6 cut(s) | 152, 277, 365, 422, 479, 560 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyCH4III | ACNGT | 2 cut(s) | 206, 319 |
| HpyCH4IV | ACGT | 2 cut(s) | 353, 552 |
| HpyCH4V | TGCA | 1 cut(s) | 592 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 81, 207 |
| HpyF3I | CTNAG | 3 cut(s) | 387, 452, 471 |
| HpySE526I | ACGT | 2 cut(s) | 353, 552 |
| Hsp92I | GRCGYC | 1 cut(s) | 552 |
| Ksp22I | TGATCA | 1 cut(s) | 675 |
| Kzo9I | GATC | 3 cut(s) | 162, 279, 675 |
| LmnI | GCTCC | 4 cut(s) | 219, 238, 329, 450 |
| LpnPI | CCDG | 9 cut(s) | 115, 141, 317, 506, 516, 533, 562, 593, 620 |
| Lsp1109I | GCAGC | 1 cut(s) | 403 |
| LweI | GCATC | 3 cut(s) | 357, 418, 484 |
| MaeI | CTAG | 1 cut(s) | 560 |
| MaeII | ACGT | 2 cut(s) | 353, 552 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MalI | GATC | 3 cut(s) | 164, 281, 677 |
| MboI | GATC | 3 cut(s) | 162, 279, 675 |
| MboII | GAAGA | 7 cut(s) | 221, 485, 644, 664, 667, 670, 673 |
| MhlI | GDGCHC | 2 cut(s) | 243, 326 |
| MluCI | AATT | 2 cut(s) | 221, 613 |
| MroXI | GAANNNNTTC | 1 cut(s) | 67 |
| MseI | TTAA | 1 cut(s) | 429 |
| MspA1I | CMGCKG | 1 cut(s) | 386 |
| MspI | CCGG | 1 cut(s) | 102 |
| MspR9I | CCNGG | 2 cut(s) | 521, 608 |
| Mva1269I | GAATGC | 1 cut(s) | 131 |
| MvaI | CCWGG | 2 cut(s) | 521, 608 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 81, 207 |
| NdeII | GATC | 3 cut(s) | 162, 279, 675 |
| NlaIV | GGNNCC | 1 cut(s) | 468 |
| NmeAIII | GCCGAG | 1 cut(s) | 487 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| PaeR7I | CTCGAG | 1 cut(s) | 479 |
| PctI | GAATGC | 1 cut(s) | 131 |
| PdmI | GAANNNNTTC | 1 cut(s) | 67 |
| PfeI | GAWTC | 2 cut(s) | 124, 668 |
| PflFI | GACNNNGTC | 1 cut(s) | 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 520 |
| PkrI | GCNGC | 2 cut(s) | 256, 418 |
| PpuMI | RGGWCCY | 1 cut(s) | 467 |
| PshAI | GACNNNNGTC | 1 cut(s) | 692 |
| Psp124BI | GAGCTC | 2 cut(s) | 243, 326 |
| Psp5II | RGGWCCY | 1 cut(s) | 467 |
| Psp6I | CCWGG | 2 cut(s) | 519, 606 |
| PspGI | CCWGG | 2 cut(s) | 519, 606 |
| PspN4I | GGNNCC | 1 cut(s) | 468 |
| PspPI | GGNCC | 4 cut(s) | 299, 334, 467, 505 |
| PspPPI | RGGWCCY | 1 cut(s) | 467 |
| PsyI | GACNNNGTC | 1 cut(s) | 272 |
| PvuII | CAGCTG | 1 cut(s) | 386 |
| SacI | GAGCTC | 2 cut(s) | 243, 326 |
| SaqAI | TTAA | 1 cut(s) | 429 |
| SatI | GCNGC | 2 cut(s) | 255, 417 |
| Sau3AI | GATC | 3 cut(s) | 162, 279, 675 |
| Sau96I | GGNCC | 4 cut(s) | 299, 334, 467, 505 |
| ScrFI | CCNGG | 2 cut(s) | 521, 608 |
| SduI | GDGCHC | 2 cut(s) | 243, 326 |
| SfaNI | GCATC | 3 cut(s) | 357, 418, 484 |
| Sfr274I | CTCGAG | 1 cut(s) | 479 |
| SgrAI | CRCCGGYG | 1 cut(s) | 101 |
| SinI | GGWCC | 1 cut(s) | 467 |
| SlaI | CTCGAG | 1 cut(s) | 479 |
| SmlI | CTYRAG | 2 cut(s) | 150, 479 |
| SmoI | CTYRAG | 2 cut(s) | 150, 479 |
| Sse9I | AATT | 2 cut(s) | 221, 613 |
| SsiI | CCGC | 3 cut(s) | 96, 254, 327 |
| SspMI | CTAG | 1 cut(s) | 560 |
| SstI | GAGCTC | 2 cut(s) | 243, 326 |
| StyD4I | CCNGG | 2 cut(s) | 519, 606 |
| TaaI | ACNGT | 2 cut(s) | 206, 319 |
| TaiI | ACGT | 2 cut(s) | 356, 555 |
| TaqI | TCGA | 4 cut(s) | 278, 423, 480, 671 |
| TasI | AATT | 2 cut(s) | 221, 613 |
| TauI | GCSGC | 1 cut(s) | 257 |
| TfiI | GAWTC | 2 cut(s) | 124, 668 |
| Tru1I | TTAA | 1 cut(s) | 429 |
| Tru9I | TTAA | 1 cut(s) | 429 |
| TscAI | CASTG | 2 cut(s) | 209, 322 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 1 cut(s) | 416 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 2 cut(s) | 214, 302 |
| TspRI | CASTG | 2 cut(s) | 209, 322 |
| Tth111I | GACNNNGTC | 1 cut(s) | 272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 520 |
| VpaK11BI | GGWCC | 1 cut(s) | 467 |
| XapI | RAATTY | 2 cut(s) | 221, 613 |
| XbaI | TCTAGA | 1 cut(s) | 559 |
| XhoI | CTCGAG | 1 cut(s) | 479 |
| XmnI | GAANNNNTTC | 1 cut(s) | 67 |
| XspI | CTAG | 1 cut(s) | 560 |
| ZraI | GACGTC | 1 cut(s) | 553 |