gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 39 - 194 | 1.4e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 683 |
| AciI | CCGC | 2 cut(s) | 417, 683 |
| AclWI | GGATC | 1 cut(s) | 427 |
| AcuI | CTGAAG | 3 cut(s) | 96, 365, 534 |
| AfaI | GTAC | 1 cut(s) | 605 |
| AflII | CTTAAG | 1 cut(s) | 446 |
| AflIII | ACRYGT | 1 cut(s) | 132 |
| AgsI | TTSAA | 2 cut(s) | 139, 149 |
| AhlI | ACTAGT | 1 cut(s) | 550 |
| AjiI | CACGTC | 1 cut(s) | 454 |
| AjnI | CCWGG | 1 cut(s) | 412 |
| AluBI | AGCT | 8 cut(s) | 55, 198, 208, 252, 266, 343, 506, 538 |
| AluI | AGCT | 8 cut(s) | 55, 198, 208, 252, 266, 343, 506, 538 |
| Alw21I | GWGCWC | 1 cut(s) | 268 |
| Alw26I | GTCTC | 1 cut(s) | 333 |
| AlwI | GGATC | 1 cut(s) | 427 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 431 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 2 cut(s) | 222, 410 |
| ApeKI | GCWGC | 4 cut(s) | 47, 160, 239, 538 |
| AspLEI | GCGC | 1 cut(s) | 611 |
| AsuHPI | GGTGA | 3 cut(s) | 31, 449, 569 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 268 |
| BbsI | GAAGAC | 2 cut(s) | 84, 180 |
| Bbv12I | GWGCWC | 1 cut(s) | 268 |
| BbvI | GCAGC | 4 cut(s) | 34, 172, 226, 525 |
| BccI | CCATC | 1 cut(s) | 428 |
| BceAI | ACGGC | 2 cut(s) | 555, 622 |
| BciT130I | CCWGG | 1 cut(s) | 414 |
| BciVI | GTATCC | 1 cut(s) | 632 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcoDI | GTCTC | 1 cut(s) | 333 |
| BcuI | ACTAGT | 1 cut(s) | 550 |
| BfaI | CTAG | 4 cut(s) | 107, 551, 567, 687 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfoI | RGCGCY | 1 cut(s) | 612 |
| BfrI | CTTAAG | 1 cut(s) | 446 |
| BfuI | GTATCC | 1 cut(s) | 632 |
| BisI | GCNGC | 5 cut(s) | 48, 161, 240, 539, 684 |
| BlsI | GCNGC | 5 cut(s) | 49, 162, 241, 540, 685 |
| Bme1390I | CCNGG | 1 cut(s) | 414 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgBI | CACGTC | 1 cut(s) | 454 |
| BmrFI | CCNGG | 1 cut(s) | 414 |
| BmrI | ACTGGG | 1 cut(s) | 107 |
| BmuI | ACTGGG | 1 cut(s) | 107 |
| BoxI | GACNNNNGTC | 1 cut(s) | 469 |
| BpiI | GAAGAC | 2 cut(s) | 84, 180 |
| BpmI | CTGGAG | 2 cut(s) | 408, 513 |
| BpuEI | CTTGAG | 2 cut(s) | 238, 308 |
| BsaBI | GATNNNNATC | 1 cut(s) | 375 |
| Bse118I | RCCGGY | 1 cut(s) | 61 |
| Bse1I | ACTGG | 2 cut(s) | 113, 425 |
| Bse3DI | GCAATG | 1 cut(s) | 297 |
| Bse8I | GATNNNNATC | 1 cut(s) | 375 |
| BseBI | CCWGG | 1 cut(s) | 414 |
| BseJI | GATNNNNATC | 1 cut(s) | 375 |
| BseMI | GCAATG | 1 cut(s) | 297 |
| BseMII | CTCAG | 2 cut(s) | 6, 421 |
| BseNI | ACTGG | 2 cut(s) | 113, 425 |
| BseRI | GAGGAG | 2 cut(s) | 548, 591 |
| BseXI | GCAGC | 4 cut(s) | 34, 172, 226, 525 |
| BseYI | CCCAGC | 1 cut(s) | 51 |
| Bsh1236I | CGCG | 1 cut(s) | 683 |
| BshFI | GGCC | 2 cut(s) | 224, 412 |
| BsiHKAI | GWGCWC | 1 cut(s) | 268 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 62 |
| BslFI | GGGAC | 3 cut(s) | 95, 680, 692 |
| BsmAI | GTCTC | 1 cut(s) | 333 |
| BsmFI | GGGAC | 3 cut(s) | 95, 680, 692 |
| BsnI | GGCC | 2 cut(s) | 224, 412 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 1 cut(s) | 268 |
| Bsp143I | GATC | 2 cut(s) | 419, 498 |
| BspACI | CCGC | 2 cut(s) | 417, 683 |
| BspANI | GGCC | 2 cut(s) | 224, 412 |
| BspCNI | CTCAG | 2 cut(s) | 7, 420 |
| BspFNI | CGCG | 1 cut(s) | 683 |
| BspHI | TCATGA | 1 cut(s) | 201 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BspPI | GGATC | 1 cut(s) | 427 |
| BspTI | CTTAAG | 1 cut(s) | 446 |
| BsrDI | GCAATG | 1 cut(s) | 297 |
| BsrFI | RCCGGY | 1 cut(s) | 61 |
| BsrI | ACTGG | 2 cut(s) | 113, 425 |
| BssAI | RCCGGY | 1 cut(s) | 61 |
| BssMI | GATC | 2 cut(s) | 419, 498 |
| Bst2UI | CCWGG | 1 cut(s) | 414 |
| Bst4CI | ACNGT | 1 cut(s) | 315 |
| BstAFI | CTTAAG | 1 cut(s) | 446 |
| BstC8I | GCNNGC | 1 cut(s) | 250 |
| BstDEI | CTNAG | 2 cut(s) | 15, 407 |
| BstFNI | CGCG | 1 cut(s) | 683 |
| BstH2I | RGCGCY | 1 cut(s) | 612 |
| BstHHI | GCGC | 1 cut(s) | 611 |
| BstKTI | GATC | 2 cut(s) | 422, 501 |
| BstMAI | GTCTC | 1 cut(s) | 333 |
| BstMBI | GATC | 2 cut(s) | 419, 498 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 245 |
| BstNI | CCWGG | 1 cut(s) | 414 |
| BstNSI | RCATGY | 1 cut(s) | 136 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 469 |
| BstSCI | CCNGG | 1 cut(s) | 412 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstUI | CGCG | 1 cut(s) | 683 |
| BstV1I | GCAGC | 4 cut(s) | 34, 172, 226, 525 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 180 |
| BstX2I | RGATCY | 1 cut(s) | 419 |
| BstYI | RGATCY | 1 cut(s) | 419 |
| BsuI | GTATCC | 1 cut(s) | 632 |
| BsuRI | GGCC | 2 cut(s) | 224, 412 |
| BtrI | CACGTC | 1 cut(s) | 454 |
| BtsIMutI | CAGTG | 2 cut(s) | 72, 432 |
| Cac8I | GCNNGC | 1 cut(s) | 250 |
| CaiI | CAGNNNCTG | 1 cut(s) | 431 |
| CciI | TCATGA | 1 cut(s) | 201 |
| CfoI | GCGC | 1 cut(s) | 611 |
| Cfr10I | RCCGGY | 1 cut(s) | 61 |
| CseI | GACGC | 1 cut(s) | 689 |
| Csp6I | GTAC | 1 cut(s) | 604 |
| CviAII | CATG | 6 cut(s) | 41, 133, 193, 202, 226, 542 |
| CviQI | GTAC | 1 cut(s) | 604 |
| DdeI | CTNAG | 2 cut(s) | 15, 407 |
| DpnI | GATC | 2 cut(s) | 421, 500 |
| DpnII | GATC | 2 cut(s) | 419, 498 |
| EciI | GGCGGA | 1 cut(s) | 432 |
| Ecl136II | GAGCTC | 1 cut(s) | 266 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco24I | GRGCYC | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 1 cut(s) | 266 |
| Eco57I | CTGAAG | 3 cut(s) | 96, 365, 534 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 1 cut(s) | 266 |
| EcoRII | CCWGG | 1 cut(s) | 412 |
| EcoT38I | GRGCYC | 1 cut(s) | 268 |
| FaeI | CATG | 6 cut(s) | 44, 136, 196, 205, 229, 545 |
| FaqI | GGGAC | 3 cut(s) | 95, 680, 692 |
| FatI | CATG | 6 cut(s) | 40, 132, 192, 201, 225, 541 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 161, 240, 539, 684 |
| FriOI | GRGCYC | 1 cut(s) | 268 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 161, 240, 539, 684 |
| FspBI | CTAG | 4 cut(s) | 107, 551, 567, 687 |
| GlaI | GCGC | 1 cut(s) | 610 |
| GluI | GCNGC | 5 cut(s) | 48, 161, 240, 539, 684 |
| GsaI | CCCAGC | 1 cut(s) | 55 |
| GsuI | CTGGAG | 2 cut(s) | 408, 513 |
| HaeII | RGCGCY | 1 cut(s) | 612 |
| HaeIII | GGCC | 2 cut(s) | 224, 412 |
| HapII | CCGG | 1 cut(s) | 62 |
| HgaI | GACGC | 1 cut(s) | 689 |
| HhaI | GCGC | 1 cut(s) | 611 |
| Hin1II | CATG | 6 cut(s) | 44, 136, 196, 205, 229, 545 |
| Hin6I | GCGC | 1 cut(s) | 609 |
| HinP1I | GCGC | 1 cut(s) | 609 |
| HinfI | GANTC | 2 cut(s) | 405, 563 |
| HpaII | CCGG | 1 cut(s) | 62 |
| HphI | GGTGA | 3 cut(s) | 31, 449, 569 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 220, 370, 475, 503 |
| Hpy188III | TCNNGA | 5 cut(s) | 94, 202, 261, 309, 530 |
| HpyAV | CCTTC | 1 cut(s) | 687 |
| HpyCH4III | ACNGT | 1 cut(s) | 315 |
| HpyCH4IV | ACGT | 2 cut(s) | 453, 642 |
| HpyCH4V | TGCA | 4 cut(s) | 192, 242, 302, 541 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 245 |
| HpyF3I | CTNAG | 2 cut(s) | 15, 407 |
| HpySE526I | ACGT | 2 cut(s) | 453, 642 |
| Hsp92II | CATG | 6 cut(s) | 44, 136, 196, 205, 229, 545 |
| HspAI | GCGC | 1 cut(s) | 609 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 2 cut(s) | 419, 498 |
| LmnI | GCTCC | 2 cut(s) | 234, 535 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 172, 226, 525 |
| MaeI | CTAG | 4 cut(s) | 107, 551, 567, 687 |
| MaeII | ACGT | 2 cut(s) | 453, 642 |
| MaeIII | GTNAC | 1 cut(s) | 19 |
| MalI | GATC | 2 cut(s) | 421, 500 |
| MboI | GATC | 2 cut(s) | 419, 498 |
| MboII | GAAGA | 4 cut(s) | 89, 185, 358, 572 |
| MflI | RGATCY | 1 cut(s) | 419 |
| MhlI | GDGCHC | 1 cut(s) | 268 |
| MluCI | AATT | 1 cut(s) | 29 |
| MlyI | GAGTC | 1 cut(s) | 399 |
| MmeI | TCCRAC | 3 cut(s) | 198, 261, 616 |
| MnlI | CCTC | 7 cut(s) | 10, 48, 214, 344, 526, 569, 576 |
| MseI | TTAA | 5 cut(s) | 66, 275, 359, 447, 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 551 |
| MspCI | CTTAAG | 1 cut(s) | 446 |
| MspI | CCGG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 414 |
| MvaI | CCWGG | 1 cut(s) | 414 |
| MvnI | CGCG | 1 cut(s) | 683 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 245 |
| NdeII | GATC | 2 cut(s) | 419, 498 |
| NlaIII | CATG | 6 cut(s) | 44, 136, 196, 205, 229, 545 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NspI | RCATGY | 1 cut(s) | 136 |
| PagI | TCATGA | 1 cut(s) | 201 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PciI | ACATGT | 1 cut(s) | 132 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 639 |
| PfeI | GAWTC | 1 cut(s) | 563 |
| PkrI | GCNGC | 5 cut(s) | 49, 162, 241, 540, 685 |
| PleI | GAGTC | 1 cut(s) | 399 |
| PpsI | GAGTC | 1 cut(s) | 399 |
| PscI | ACATGT | 1 cut(s) | 132 |
| PshAI | GACNNNNGTC | 1 cut(s) | 469 |
| Psp124BI | GAGCTC | 1 cut(s) | 268 |
| Psp6I | CCWGG | 1 cut(s) | 412 |
| PspFI | CCCAGC | 1 cut(s) | 51 |
| PspGI | CCWGG | 1 cut(s) | 412 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 119, 151 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 431 |
| PsuI | RGATCY | 1 cut(s) | 419 |
| RsaI | GTAC | 1 cut(s) | 605 |
| RsaNI | GTAC | 1 cut(s) | 604 |
| RseI | CAYNNNNRTG | 1 cut(s) | 551 |
| SacI | GAGCTC | 1 cut(s) | 268 |
| SaqAI | TTAA | 5 cut(s) | 66, 275, 359, 447, 459 |
| SatI | GCNGC | 5 cut(s) | 48, 161, 240, 539, 684 |
| Sau3AI | GATC | 2 cut(s) | 419, 498 |
| SchI | GAGTC | 1 cut(s) | 399 |
| ScrFI | CCNGG | 1 cut(s) | 414 |
| SduI | GDGCHC | 1 cut(s) | 268 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 551 |
| SmlI | CTYRAG | 3 cut(s) | 253, 323, 446 |
| SmoI | CTYRAG | 3 cut(s) | 253, 323, 446 |
| SpeI | ACTAGT | 1 cut(s) | 550 |
| Sse9I | AATT | 1 cut(s) | 29 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 2 cut(s) | 417, 683 |
| SspMI | CTAG | 4 cut(s) | 107, 551, 567, 687 |
| SstI | GAGCTC | 1 cut(s) | 268 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| StyD4I | CCNGG | 1 cut(s) | 412 |
| TaaI | ACNGT | 1 cut(s) | 315 |
| TaiI | ACGT | 2 cut(s) | 456, 645 |
| TaqI | TCGA | 1 cut(s) | 310 |
| TasI | AATT | 1 cut(s) | 29 |
| TauI | GCSGC | 1 cut(s) | 686 |
| TfiI | GAWTC | 1 cut(s) | 563 |
| Tru1I | TTAA | 5 cut(s) | 66, 275, 359, 447, 459 |
| Tru9I | TTAA | 5 cut(s) | 66, 275, 359, 447, 459 |
| TscAI | CASTG | 2 cut(s) | 79, 432 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 4 cut(s) | 47, 160, 239, 538 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspDTI | ATGAA | 2 cut(s) | 190, 218 |
| TspGWI | ACGGA | 2 cut(s) | 459, 477 |
| TspRI | CASTG | 2 cut(s) | 79, 432 |
| Vha464I | CTTAAG | 1 cut(s) | 446 |
| XceI | RCATGY | 1 cut(s) | 136 |
| XspI | CTAG | 4 cut(s) | 107, 551, 567, 687 |