gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 428 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 646 |
| AccI | GTMKAC | 1 cut(s) | 170 |
| AcsI | RAATTY | 1 cut(s) | 226 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 527, 646 |
| AgsI | TTSAA | 9 cut(s) | 33, 209, 352, 373, 427, 460, 481, 733, 926 |
| AjnI | CCWGG | 3 cut(s) | 151, 418, 520 |
| AluBI | AGCT | 3 cut(s) | 17, 21, 27 |
| AluI | AGCT | 3 cut(s) | 17, 21, 27 |
| Alw21I | GWGCWC | 1 cut(s) | 130 |
| Alw26I | GTCTC | 1 cut(s) | 591 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 815 |
| AoxI | GGCC | 2 cut(s) | 518, 819 |
| ApeKI | GCWGC | 1 cut(s) | 776 |
| ApoI | RAATTY | 1 cut(s) | 226 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 305 |
| AspS9I | GGNCC | 2 cut(s) | 413, 819 |
| AsuHPI | GGTGA | 2 cut(s) | 153, 293 |
| AsuNHI | GCTAGC | 1 cut(s) | 17 |
| AvaII | GGWCC | 1 cut(s) | 413 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 625, 657 |
| Bbv12I | GWGCWC | 1 cut(s) | 130 |
| BbvI | GCAGC | 1 cut(s) | 763 |
| BccI | CCATC | 3 cut(s) | 46, 221, 352 |
| BciT130I | CCWGG | 3 cut(s) | 153, 420, 522 |
| BclI | TGATCA | 1 cut(s) | 283 |
| BcoDI | GTCTC | 1 cut(s) | 591 |
| BfaI | CTAG | 3 cut(s) | 18, 24, 339 |
| BfmI | CTRYAG | 1 cut(s) | 871 |
| BfuAI | ACCTGC | 1 cut(s) | 428 |
| BisI | GCNGC | 1 cut(s) | 777 |
| BlsI | GCNGC | 1 cut(s) | 778 |
| Bme1390I | CCNGG | 3 cut(s) | 153, 420, 522 |
| Bme18I | GGWCC | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 2 cut(s) | 413, 819 |
| BmiI | GGNNCC | 1 cut(s) | 820 |
| BmrFI | CCNGG | 3 cut(s) | 153, 420, 522 |
| BmrI | ACTGGG | 1 cut(s) | 825 |
| BmsI | GCATC | 1 cut(s) | 256 |
| BmtI | GCTAGC | 1 cut(s) | 21 |
| BmuI | ACTGGG | 1 cut(s) | 825 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 527, 646 |
| Bse1I | ACTGG | 4 cut(s) | 164, 457, 505, 820 |
| Bse3DI | GCAATG | 4 cut(s) | 104, 708, 718, 847 |
| BseBI | CCWGG | 3 cut(s) | 153, 420, 522 |
| BseGI | GGATG | 2 cut(s) | 38, 74 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 527, 646 |
| BseMI | GCAATG | 4 cut(s) | 104, 708, 718, 847 |
| BseMII | CTCAG | 7 cut(s) | 57, 68, 93, 122, 324, 809, 924 |
| BseNI | ACTGG | 4 cut(s) | 164, 457, 505, 820 |
| BseRI | GAGGAG | 1 cut(s) | 783 |
| BseXI | GCAGC | 1 cut(s) | 763 |
| BsgI | GTGCAG | 1 cut(s) | 911 |
| BshFI | GGCC | 2 cut(s) | 520, 821 |
| BsiHKAI | GWGCWC | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 527, 646 |
| BsmAI | GTCTC | 1 cut(s) | 591 |
| BsnI | GGCC | 2 cut(s) | 520, 821 |
| Bsp1286I | GDGCHC | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 283, 679 |
| BspANI | GGCC | 2 cut(s) | 520, 821 |
| BspCNI | CTCAG | 7 cut(s) | 56, 67, 92, 121, 323, 808, 925 |
| BspLI | GGNNCC | 1 cut(s) | 820 |
| BspMI | ACCTGC | 1 cut(s) | 428 |
| BspOI | GCTAGC | 1 cut(s) | 21 |
| BspQI | GCTCTTC | 1 cut(s) | 135 |
| BsrDI | GCAATG | 4 cut(s) | 104, 708, 718, 847 |
| BsrI | ACTGG | 4 cut(s) | 164, 457, 505, 820 |
| BssMI | GATC | 2 cut(s) | 283, 679 |
| Bst2UI | CCWGG | 3 cut(s) | 153, 420, 522 |
| Bst4CI | ACNGT | 3 cut(s) | 626, 646, 889 |
| Bst6I | CTCTTC | 3 cut(s) | 135, 322, 927 |
| BstC8I | GCNNGC | 2 cut(s) | 19, 807 |
| BstDEI | CTNAG | 7 cut(s) | 43, 54, 79, 108, 310, 795, 933 |
| BstF5I | GGATG | 2 cut(s) | 38, 74 |
| BstKTI | GATC | 2 cut(s) | 286, 682 |
| BstMAI | GTCTC | 1 cut(s) | 591 |
| BstMBI | GATC | 2 cut(s) | 283, 679 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 118, 134, 453, 510, 559, 773 |
| BstNI | CCWGG | 3 cut(s) | 153, 420, 522 |
| BstSCI | CCNGG | 3 cut(s) | 151, 418, 520 |
| BstSFI | CTRYAG | 1 cut(s) | 871 |
| BstV1I | GCAGC | 1 cut(s) | 763 |
| BsuRI | GGCC | 2 cut(s) | 520, 821 |
| BtsCI | GGATG | 2 cut(s) | 38, 74 |
| BtsIMutI | CAGTG | 5 cut(s) | 87, 171, 450, 813, 885 |
| BveI | ACCTGC | 1 cut(s) | 428 |
| Cac8I | GCNNGC | 2 cut(s) | 19, 807 |
| CaiI | CAGNNNCTG | 1 cut(s) | 815 |
| Cfr13I | GGNCC | 2 cut(s) | 413, 819 |
| CsiI | ACCWGGT | 2 cut(s) | 151, 418 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 5 cut(s) | 134, 193, 527, 577, 832 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DdeI | CTNAG | 7 cut(s) | 43, 54, 79, 108, 310, 795, 933 |
| DpnI | GATC | 2 cut(s) | 285, 681 |
| DpnII | GATC | 2 cut(s) | 283, 679 |
| Eam1104I | CTCTTC | 3 cut(s) | 135, 322, 927 |
| EarI | CTCTTC | 3 cut(s) | 135, 322, 927 |
| Eco147I | AGGCCT | 1 cut(s) | 520 |
| Eco47I | GGWCC | 1 cut(s) | 413 |
| EcoRII | CCWGG | 3 cut(s) | 151, 418, 520 |
| FaeI | CATG | 5 cut(s) | 137, 196, 530, 580, 835 |
| FatI | CATG | 5 cut(s) | 133, 192, 526, 576, 831 |
| FauNDI | CATATG | 2 cut(s) | 61, 256 |
| FbaI | TGATCA | 1 cut(s) | 283 |
| FblI | GTMKAC | 1 cut(s) | 170 |
| Fnu4HI | GCNGC | 1 cut(s) | 777 |
| FokI | GGATG | 2 cut(s) | 25, 61 |
| Fsp4HI | GCNGC | 1 cut(s) | 777 |
| FspBI | CTAG | 3 cut(s) | 18, 24, 339 |
| GluI | GCNGC | 1 cut(s) | 777 |
| HaeIII | GGCC | 2 cut(s) | 520, 821 |
| Hin1II | CATG | 5 cut(s) | 137, 196, 530, 580, 835 |
| HinfI | GANTC | 1 cut(s) | 556 |
| HphI | GGTGA | 2 cut(s) | 153, 293 |
| Hpy166II | GTNNAC | 1 cut(s) | 171 |
| Hpy188I | TCNGA | 3 cut(s) | 288, 883, 934 |
| Hpy188III | TCNNGA | 1 cut(s) | 677 |
| Hpy8I | GTNNAC | 1 cut(s) | 171 |
| HpyAV | CCTTC | 1 cut(s) | 316 |
| HpyCH4III | ACNGT | 3 cut(s) | 626, 646, 889 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 118, 134, 453, 510, 559, 773 |
| HpyF3I | CTNAG | 7 cut(s) | 43, 54, 79, 108, 310, 795, 933 |
| Hsp92II | CATG | 5 cut(s) | 137, 196, 530, 580, 835 |
| Ksp22I | TGATCA | 1 cut(s) | 283 |
| Kzo9I | GATC | 2 cut(s) | 283, 679 |
| LguI | GCTCTTC | 1 cut(s) | 135 |
| LmnI | GCTCC | 4 cut(s) | 14, 380, 530, 796 |
| Lsp1109I | GCAGC | 1 cut(s) | 763 |
| LweI | GCATC | 1 cut(s) | 256 |
| MabI | ACCWGGT | 2 cut(s) | 151, 418 |
| MaeI | CTAG | 3 cut(s) | 18, 24, 339 |
| MaeIII | GTNAC | 2 cut(s) | 395, 656 |
| MalI | GATC | 2 cut(s) | 285, 681 |
| MboI | GATC | 2 cut(s) | 283, 679 |
| MboII | GAAGA | 5 cut(s) | 122, 339, 642, 645, 914 |
| MhlI | GDGCHC | 1 cut(s) | 130 |
| MluCI | AATT | 2 cut(s) | 226, 666 |
| MroXI | GAANNNNTTC | 1 cut(s) | 305 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| MspR9I | CCNGG | 3 cut(s) | 153, 420, 522 |
| MvaI | CCWGG | 3 cut(s) | 153, 420, 522 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 118, 134, 453, 510, 559, 773 |
| NdeI | CATATG | 2 cut(s) | 61, 256 |
| NdeII | GATC | 2 cut(s) | 283, 679 |
| NheI | GCTAGC | 1 cut(s) | 17 |
| NlaIII | CATG | 5 cut(s) | 137, 196, 530, 580, 835 |
| NlaIV | GGNNCC | 1 cut(s) | 820 |
| PceI | AGGCCT | 1 cut(s) | 520 |
| PciSI | GCTCTTC | 1 cut(s) | 135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 556 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 646 |
| PkrI | GCNGC | 1 cut(s) | 778 |
| Psp6I | CCWGG | 3 cut(s) | 151, 418, 520 |
| PspGI | CCWGG | 3 cut(s) | 151, 418, 520 |
| PspN4I | GGNNCC | 1 cut(s) | 820 |
| PspPI | GGNCC | 2 cut(s) | 413, 819 |
| PstNI | CAGNNNCTG | 1 cut(s) | 815 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SapI | GCTCTTC | 1 cut(s) | 135 |
| SatI | GCNGC | 1 cut(s) | 777 |
| Sau3AI | GATC | 2 cut(s) | 283, 679 |
| Sau96I | GGNCC | 2 cut(s) | 413, 819 |
| ScrFI | CCNGG | 3 cut(s) | 153, 420, 522 |
| SduI | GDGCHC | 1 cut(s) | 130 |
| SexAI | ACCWGGT | 2 cut(s) | 151, 418 |
| SfaNI | GCATC | 1 cut(s) | 256 |
| SfcI | CTRYAG | 1 cut(s) | 871 |
| SinI | GGWCC | 1 cut(s) | 413 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| Sse9I | AATT | 2 cut(s) | 226, 666 |
| SseBI | AGGCCT | 1 cut(s) | 520 |
| SspMI | CTAG | 3 cut(s) | 18, 24, 339 |
| StuI | AGGCCT | 1 cut(s) | 520 |
| StyD4I | CCNGG | 3 cut(s) | 151, 418, 520 |
| TaaI | ACNGT | 3 cut(s) | 626, 646, 889 |
| TaqI | TCGA | 1 cut(s) | 682 |
| TasI | AATT | 2 cut(s) | 226, 666 |
| TfiI | GAWTC | 1 cut(s) | 556 |
| TscAI | CASTG | 5 cut(s) | 87, 171, 457, 820, 892 |
| TseI | GCWGC | 1 cut(s) | 776 |
| TspDTI | ATGAA | 4 cut(s) | 122, 287, 314, 593 |
| TspRI | CASTG | 5 cut(s) | 87, 171, 457, 820, 892 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 646 |
| VpaK11BI | GGWCC | 1 cut(s) | 413 |
| XapI | RAATTY | 1 cut(s) | 226 |
| XmiI | GTMKAC | 1 cut(s) | 170 |
| XmnI | GAANNNNTTC | 1 cut(s) | 305 |
| XspI | CTAG | 3 cut(s) | 18, 24, 339 |