gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 41 - 211 | 2.8e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 940 |
| AclWI | GGATC | 2 cut(s) | 430, 828 |
| AcoI | YGGCCR | 2 cut(s) | 678, 1113 |
| AcsI | RAATTY | 3 cut(s) | 721, 857, 1270 |
| AcuI | CTGAAG | 2 cut(s) | 1060, 1236 |
| AfaI | GTAC | 3 cut(s) | 376, 906, 1143 |
| AgsI | TTSAA | 8 cut(s) | 107, 218, 232, 350, 407, 763, 820, 1134 |
| AluBI | AGCT | 4 cut(s) | 461, 632, 1031, 1278 |
| AluI | AGCT | 4 cut(s) | 461, 632, 1031, 1278 |
| Alw26I | GTCTC | 2 cut(s) | 439, 1092 |
| AlwI | GGATC | 2 cut(s) | 430, 828 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 77, 485 |
| AoxI | GGCC | 5 cut(s) | 678, 1000, 1113, 1239, 1336 |
| ApeKI | GCWGC | 4 cut(s) | 315, 461, 1010, 1031 |
| ApoI | RAATTY | 3 cut(s) | 721, 857, 1270 |
| AspS9I | GGNCC | 2 cut(s) | 917, 1239 |
| AsuHPI | GGTGA | 3 cut(s) | 27, 34, 1176 |
| AvaII | GGWCC | 1 cut(s) | 917 |
| BalI | TGGCCA | 1 cut(s) | 680 |
| BanII | GRGCYC | 1 cut(s) | 259 |
| BauI | CACGAG | 1 cut(s) | 327 |
| BbsI | GAAGAC | 2 cut(s) | 279, 527 |
| BbvI | GCAGC | 4 cut(s) | 327, 448, 997, 1018 |
| BccI | CCATC | 1 cut(s) | 158 |
| BceAI | ACGGC | 2 cut(s) | 643, 1128 |
| BclI | TGATCA | 1 cut(s) | 691 |
| BcoDI | GTCTC | 2 cut(s) | 439, 1092 |
| BfaI | CTAG | 2 cut(s) | 801, 921 |
| BfmI | CTRYAG | 1 cut(s) | 1024 |
| BglII | AGATCT | 1 cut(s) | 331 |
| BisI | GCNGC | 4 cut(s) | 316, 462, 1011, 1032 |
| BlpI | GCTNAGC | 1 cut(s) | 1279 |
| BlsI | GCNGC | 4 cut(s) | 317, 463, 1012, 1033 |
| Bme18I | GGWCC | 1 cut(s) | 917 |
| BmgT120I | GGNCC | 2 cut(s) | 917, 1239 |
| BmiI | GGNNCC | 1 cut(s) | 1240 |
| BmsI | GCATC | 4 cut(s) | 111, 120, 234, 968 |
| BpiI | GAAGAC | 2 cut(s) | 279, 527 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1279 |
| Bsa29I | ATCGAT | 1 cut(s) | 380 |
| BsaAI | YACGTR | 2 cut(s) | 704, 1128 |
| BsaJI | CCNNGG | 2 cut(s) | 624, 1358 |
| Bse1I | ACTGG | 2 cut(s) | 321, 969 |
| BseCI | ATCGAT | 1 cut(s) | 380 |
| BseDI | CCNNGG | 2 cut(s) | 624, 1358 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseMII | CTCAG | 1 cut(s) | 626 |
| BseNI | ACTGG | 2 cut(s) | 321, 969 |
| BseXI | GCAGC | 4 cut(s) | 327, 448, 997, 1018 |
| BseYI | CCCAGC | 1 cut(s) | 485 |
| BsgI | GTGCAG | 1 cut(s) | 447 |
| BshFI | GGCC | 5 cut(s) | 680, 1002, 1115, 1241, 1338 |
| BshVI | ATCGAT | 1 cut(s) | 380 |
| BslFI | GGGAC | 1 cut(s) | 946 |
| BsmAI | GTCTC | 2 cut(s) | 439, 1092 |
| BsmFI | GGGAC | 1 cut(s) | 946 |
| BsnI | GGCC | 5 cut(s) | 680, 1002, 1115, 1241, 1338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp143I | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1279 |
| BspANI | GGCC | 5 cut(s) | 680, 1002, 1115, 1241, 1338 |
| BspCNI | CTCAG | 1 cut(s) | 625 |
| BspDI | ATCGAT | 1 cut(s) | 380 |
| BspLI | GGNNCC | 1 cut(s) | 1240 |
| BspPI | GGATC | 2 cut(s) | 430, 828 |
| BsrI | ACTGG | 2 cut(s) | 321, 969 |
| BssECI | CCNNGG | 2 cut(s) | 624, 1358 |
| BssMI | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| BssSI | CACGAG | 1 cut(s) | 327 |
| BssT1I | CCWWGG | 1 cut(s) | 1358 |
| Bst2BI | CACGAG | 1 cut(s) | 327 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 357, 367, 882, 1309 |
| Bst6I | CTCTTC | 1 cut(s) | 1186 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 130 |
| BstBAI | YACGTR | 2 cut(s) | 704, 1128 |
| BstDEI | CTNAG | 2 cut(s) | 612, 1279 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstKTI | GATC | 8 cut(s) | 42, 334, 403, 425, 519, 694, 836, 1139 |
| BstMAI | GTCTC | 2 cut(s) | 439, 1092 |
| BstMBI | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 130, 629 |
| BstSFI | CTRYAG | 1 cut(s) | 1024 |
| BstV1I | GCAGC | 4 cut(s) | 327, 448, 997, 1018 |
| BstV2I | GAAGAC | 2 cut(s) | 279, 527 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 901 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| Bsu15I | ATCGAT | 1 cut(s) | 380 |
| BsuRI | GGCC | 5 cut(s) | 680, 1002, 1115, 1241, 1338 |
| BsuTUI | ATCGAT | 1 cut(s) | 380 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 2 cut(s) | 976, 1227 |
| CaiI | CAGNNNCTG | 2 cut(s) | 77, 485 |
| Cfr13I | GGNCC | 2 cut(s) | 917, 1239 |
| ClaI | ATCGAT | 1 cut(s) | 380 |
| Csp6I | GTAC | 3 cut(s) | 375, 905, 1142 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 751, 754, 786, 789 |
| CviAII | CATG | 8 cut(s) | 151, 248, 572, 791, 908, 1108, 1117, 1252 |
| CviQI | GTAC | 3 cut(s) | 375, 905, 1142 |
| DdeI | CTNAG | 2 cut(s) | 612, 1279 |
| DpnI | GATC | 8 cut(s) | 41, 333, 402, 424, 518, 693, 835, 1138 |
| DpnII | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 940 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 940 |
| EaeI | YGGCCR | 2 cut(s) | 678, 1113 |
| Eam1104I | CTCTTC | 1 cut(s) | 1186 |
| EarI | CTCTTC | 1 cut(s) | 1186 |
| Eco130I | CCWWGG | 1 cut(s) | 1358 |
| Eco24I | GRGCYC | 1 cut(s) | 259 |
| Eco47I | GGWCC | 1 cut(s) | 917 |
| Eco57I | CTGAAG | 2 cut(s) | 1060, 1236 |
| EcoRI | GAATTC | 1 cut(s) | 721 |
| EcoT14I | CCWWGG | 1 cut(s) | 1358 |
| EcoT22I | ATGCAT | 1 cut(s) | 249 |
| EcoT38I | GRGCYC | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 1358 |
| FaeI | CATG | 8 cut(s) | 154, 251, 575, 794, 911, 1111, 1120, 1255 |
| FaqI | GGGAC | 1 cut(s) | 946 |
| FatI | CATG | 8 cut(s) | 150, 247, 571, 790, 907, 1107, 1116, 1251 |
| FbaI | TGATCA | 1 cut(s) | 691 |
| Fnu4HI | GCNGC | 4 cut(s) | 316, 462, 1011, 1032 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 259 |
| Fsp4HI | GCNGC | 4 cut(s) | 316, 462, 1011, 1032 |
| FspBI | CTAG | 2 cut(s) | 801, 921 |
| GluI | GCNGC | 4 cut(s) | 316, 462, 1011, 1032 |
| GsaI | CCCAGC | 1 cut(s) | 489 |
| HaeIII | GGCC | 5 cut(s) | 680, 1002, 1115, 1241, 1338 |
| Hin1II | CATG | 8 cut(s) | 154, 251, 575, 794, 911, 1111, 1120, 1255 |
| HincII | GTYRAC | 1 cut(s) | 1177 |
| HindII | GTYRAC | 1 cut(s) | 1177 |
| HinfI | GANTC | 9 cut(s) | 92, 147, 340, 428, 610, 698, 934, 1232, 1348 |
| HphI | GGTGA | 3 cut(s) | 27, 34, 1176 |
| Hpy166II | GTNNAC | 2 cut(s) | 326, 1177 |
| Hpy188I | TCNGA | 5 cut(s) | 120, 390, 427, 609, 984 |
| Hpy188III | TCNNGA | 7 cut(s) | 232, 327, 350, 695, 1078, 1134, 1312 |
| Hpy8I | GTNNAC | 2 cut(s) | 326, 1177 |
| HpyAV | CCTTC | 5 cut(s) | 131, 356, 388, 948, 1322 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 357, 367, 882, 1309 |
| HpyCH4IV | ACGT | 3 cut(s) | 203, 703, 1127 |
| HpyCH4V | TGCA | 9 cut(s) | 31, 124, 247, 265, 448, 464, 479, 959, 1369 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 130, 629 |
| HpyF3I | CTNAG | 2 cut(s) | 612, 1279 |
| HpySE526I | ACGT | 3 cut(s) | 203, 703, 1127 |
| Hsp92II | CATG | 8 cut(s) | 154, 251, 575, 794, 911, 1111, 1120, 1255 |
| Ksp22I | TGATCA | 1 cut(s) | 691 |
| Kzo9I | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| Lsp1109I | GCAGC | 4 cut(s) | 327, 448, 997, 1018 |
| LweI | GCATC | 4 cut(s) | 111, 120, 234, 968 |
| MaeI | CTAG | 2 cut(s) | 801, 921 |
| MaeII | ACGT | 3 cut(s) | 203, 703, 1127 |
| MaeIII | GTNAC | 6 cut(s) | 4, 73, 615, 1019, 1040, 1297 |
| MalI | GATC | 8 cut(s) | 41, 333, 402, 424, 518, 693, 835, 1138 |
| MboI | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| MfeI | CAATTG | 1 cut(s) | 125 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MlsI | TGGCCA | 1 cut(s) | 680 |
| MluNI | TGGCCA | 1 cut(s) | 680 |
| MlyI | GAGTC | 3 cut(s) | 604, 692, 928 |
| MmeI | TCCRAC | 3 cut(s) | 66, 120, 1220 |
| MnlI | CCTC | 6 cut(s) | 67, 192, 217, 619, 1156, 1260 |
| Mox20I | TGGCCA | 1 cut(s) | 680 |
| Mph1103I | ATGCAT | 1 cut(s) | 249 |
| MscI | TGGCCA | 1 cut(s) | 680 |
| MseI | TTAA | 1 cut(s) | 456 |
| MslI | CAYNNNNRTG | 2 cut(s) | 912, 954 |
| Msp20I | TGGCCA | 1 cut(s) | 680 |
| MunI | CAATTG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 130, 629 |
| NdeII | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| NlaIII | CATG | 8 cut(s) | 154, 251, 575, 794, 911, 1111, 1120, 1255 |
| NlaIV | GGNNCC | 1 cut(s) | 1240 |
| NmeAIII | GCCGAG | 1 cut(s) | 649 |
| NsiI | ATGCAT | 1 cut(s) | 249 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 656 |
| PfeI | GAWTC | 6 cut(s) | 92, 147, 340, 428, 1232, 1348 |
| PkrI | GCNGC | 4 cut(s) | 317, 463, 1012, 1033 |
| PleI | GAGTC | 3 cut(s) | 604, 692, 928 |
| PpsI | GAGTC | 3 cut(s) | 604, 692, 928 |
| Ppu21I | YACGTR | 2 cut(s) | 704, 1128 |
| PspFI | CCCAGC | 1 cut(s) | 485 |
| PspN4I | GGNNCC | 1 cut(s) | 1240 |
| PspPI | GGNCC | 2 cut(s) | 917, 1239 |
| PstNI | CAGNNNCTG | 2 cut(s) | 77, 485 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RsaI | GTAC | 3 cut(s) | 376, 906, 1143 |
| RsaNI | GTAC | 3 cut(s) | 375, 905, 1142 |
| RseI | CAYNNNNRTG | 2 cut(s) | 912, 954 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 4 cut(s) | 316, 462, 1011, 1032 |
| Sau3AI | GATC | 8 cut(s) | 39, 331, 400, 422, 516, 691, 833, 1136 |
| Sau96I | GGNCC | 2 cut(s) | 917, 1239 |
| SchI | GAGTC | 3 cut(s) | 604, 692, 928 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SfaNI | GCATC | 4 cut(s) | 111, 120, 234, 968 |
| SfcI | CTRYAG | 1 cut(s) | 1024 |
| SinI | GGWCC | 1 cut(s) | 917 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 912, 954 |
| SspI | AATATT | 1 cut(s) | 1208 |
| SspMI | CTAG | 2 cut(s) | 801, 921 |
| StyI | CCWWGG | 1 cut(s) | 1358 |
| TaaI | ACNGT | 5 cut(s) | 79, 357, 367, 882, 1309 |
| TaiI | ACGT | 3 cut(s) | 206, 706, 1130 |
| TaqI | TCGA | 4 cut(s) | 135, 380, 832, 1063 |
| TfiI | GAWTC | 6 cut(s) | 92, 147, 340, 428, 1232, 1348 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TscAI | CASTG | 2 cut(s) | 976, 1234 |
| TseI | GCWGC | 4 cut(s) | 315, 461, 1010, 1031 |
| TspDTI | ATGAA | 7 cut(s) | 186, 407, 519, 560, 731, 779, 1133 |
| TspGWI | ACGGA | 1 cut(s) | 49 |
| TspRI | CASTG | 2 cut(s) | 976, 1234 |
| VpaK11BI | GGWCC | 1 cut(s) | 917 |
| XapI | RAATTY | 3 cut(s) | 721, 857, 1270 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 818, 1319 |
| XspI | CTAG | 2 cut(s) | 801, 921 |
| Zsp2I | ATGCAT | 1 cut(s) | 249 |