gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 108 |
| Acc65I | GGTACC | 2 cut(s) | 96, 1141 |
| AccB1I | GGYRCC | 2 cut(s) | 96, 1141 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 55 |
| AciI | CCGC | 2 cut(s) | 246, 1477 |
| AclI | AACGTT | 1 cut(s) | 598 |
| AclWI | GGATC | 2 cut(s) | 1303, 1316 |
| AcoI | YGGCCR | 1 cut(s) | 936 |
| AcsI | RAATTY | 2 cut(s) | 1295, 1317 |
| AcuI | CTGAAG | 1 cut(s) | 374 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 55, 391, 1350 |
| AgsI | TTSAA | 5 cut(s) | 365, 772, 1123, 1247, 1379 |
| AjnI | CCWGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| AluBI | AGCT | 8 cut(s) | 132, 182, 302, 373, 442, 510, 728, 893 |
| AluI | AGCT | 8 cut(s) | 132, 182, 302, 373, 442, 510, 728, 893 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 543 |
| Alw26I | GTCTC | 2 cut(s) | 34, 618 |
| AlwI | GGATC | 2 cut(s) | 1303, 1316 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 397 |
| AoxI | GGCC | 3 cut(s) | 37, 52, 936 |
| ApeKI | GCWGC | 7 cut(s) | 373, 439, 809, 893, 911, 1004, 1275 |
| ApoI | RAATTY | 2 cut(s) | 1295, 1317 |
| AseI | ATTAAT | 1 cut(s) | 516 |
| Asp718I | GGTACC | 2 cut(s) | 96, 1141 |
| AspA2I | CCTAGG | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 856 |
| AspS9I | GGNCC | 4 cut(s) | 38, 160, 417, 564 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 308 |
| AsuNHI | GCTAGC | 1 cut(s) | 554 |
| AvaII | GGWCC | 3 cut(s) | 160, 417, 564 |
| AvrII | CCTAGG | 1 cut(s) | 20 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1143, 1176, 1185, 1218 |
| BamHI | GGATCC | 1 cut(s) | 1308 |
| BanI | GGYRCC | 2 cut(s) | 96, 1141 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 442, 474 |
| BauI | CACGAG | 1 cut(s) | 570 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 543 |
| BbvI | GCAGC | 7 cut(s) | 360, 451, 796, 880, 898, 991, 1287 |
| BccI | CCATC | 3 cut(s) | 322, 394, 407 |
| BceAI | ACGGC | 4 cut(s) | 517, 951, 1142, 1202 |
| BciT130I | CCWGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| BcoDI | GTCTC | 2 cut(s) | 34, 618 |
| BfaI | CTAG | 5 cut(s) | 21, 555, 725, 1134, 1313 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 1 cut(s) | 857 |
| BfuAI | ACCTGC | 1 cut(s) | 108 |
| BisI | GCNGC | 8 cut(s) | 246, 374, 440, 810, 894, 912, 1005, 1276 |
| BlnI | CCTAGG | 1 cut(s) | 20 |
| BlsI | GCNGC | 8 cut(s) | 247, 375, 441, 811, 895, 913, 1006, 1277 |
| BmcAI | AGTACT | 1 cut(s) | 1236 |
| Bme1390I | CCNGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| Bme18I | GGWCC | 3 cut(s) | 160, 417, 564 |
| BmgT120I | GGNCC | 4 cut(s) | 38, 160, 417, 564 |
| BmiI | GGNNCC | 5 cut(s) | 98, 418, 984, 1143, 1310 |
| BmrFI | CCNGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| BmsI | GCATC | 2 cut(s) | 232, 633 |
| BmtI | GCTAGC | 1 cut(s) | 558 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 553, 585 |
| BpmI | CTGGAG | 1 cut(s) | 1223 |
| Bpu10I | CCTNAGC | 1 cut(s) | 813 |
| BpuEI | CTTGAG | 3 cut(s) | 575, 869, 1191 |
| Bsa29I | ATCGAT | 1 cut(s) | 1028 |
| BsaAI | YACGTR | 1 cut(s) | 837 |
| BsaJI | CCNNGG | 7 cut(s) | 20, 49, 55, 75, 123, 579, 1322 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 55, 391, 1350 |
| Bse3DI | GCAATG | 1 cut(s) | 1387 |
| BseBI | CCWGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| BseCI | ATCGAT | 1 cut(s) | 1028 |
| BseDI | CCNNGG | 7 cut(s) | 20, 49, 55, 75, 123, 579, 1322 |
| BseGI | GGATG | 4 cut(s) | 247, 343, 748, 885 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 55, 391, 1350 |
| BseMI | GCAATG | 1 cut(s) | 1387 |
| BseMII | CTCAG | 6 cut(s) | 294, 520, 629, 827, 876, 1372 |
| BseRI | GAGGAG | 1 cut(s) | 1412 |
| BseXI | GCAGC | 7 cut(s) | 360, 451, 796, 880, 898, 991, 1287 |
| BsgI | GTGCAG | 1 cut(s) | 506 |
| BshFI | GGCC | 3 cut(s) | 39, 54, 938 |
| BshNI | GGYRCC | 2 cut(s) | 96, 1141 |
| BshVI | ATCGAT | 1 cut(s) | 1028 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 543 |
| BsiSI | CCGG | 1 cut(s) | 986 |
| BslFI | GGGAC | 2 cut(s) | 72, 430 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 55, 391, 1350 |
| BsmAI | GTCTC | 2 cut(s) | 34, 618 |
| BsmBI | CGTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 2 cut(s) | 72, 430 |
| BsmI | GAATGC | 1 cut(s) | 706 |
| BsnI | GGCC | 3 cut(s) | 39, 54, 938 |
| Bsp1286I | GDGCHC | 2 cut(s) | 87, 543 |
| Bsp143I | GATC | 3 cut(s) | 991, 1093, 1308 |
| Bsp19I | CCATGG | 2 cut(s) | 49, 75 |
| BspACI | CCGC | 2 cut(s) | 246, 1477 |
| BspANI | GGCC | 3 cut(s) | 39, 54, 938 |
| BspCNI | CTCAG | 6 cut(s) | 295, 519, 628, 826, 877, 1371 |
| BspDI | ATCGAT | 1 cut(s) | 1028 |
| BspHI | TCATGA | 1 cut(s) | 1428 |
| BspLI | GGNNCC | 5 cut(s) | 98, 418, 984, 1143, 1310 |
| BspMI | ACCTGC | 1 cut(s) | 108 |
| BspOI | GCTAGC | 1 cut(s) | 558 |
| BspPI | GGATC | 2 cut(s) | 1303, 1316 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 2 cut(s) | 96, 1141 |
| BsrDI | GCAATG | 1 cut(s) | 1387 |
| BssECI | CCNNGG | 7 cut(s) | 20, 49, 55, 75, 123, 579, 1322 |
| BssMI | GATC | 3 cut(s) | 991, 1093, 1308 |
| BssSI | CACGAG | 1 cut(s) | 570 |
| BssT1I | CCWWGG | 4 cut(s) | 20, 49, 75, 1322 |
| Bst2BI | CACGAG | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| Bst4CI | ACNGT | 5 cut(s) | 212, 802, 1119, 1198, 1234 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 837 |
| BstC8I | GCNNGC | 6 cut(s) | 180, 556, 730, 786, 891, 1020 |
| BstDEI | CTNAG | 7 cut(s) | 113, 303, 506, 615, 813, 885, 1358 |
| BstDSI | CCRYGG | 2 cut(s) | 49, 75 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 389 |
| BstF5I | GGATG | 4 cut(s) | 247, 343, 748, 885 |
| BstH2I | RGCGCY | 1 cut(s) | 857 |
| BstHHI | GCGC | 1 cut(s) | 856 |
| BstKTI | GATC | 3 cut(s) | 994, 1096, 1311 |
| BstMAI | GTCTC | 2 cut(s) | 34, 618 |
| BstMBI | GATC | 3 cut(s) | 991, 1093, 1308 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 188, 538, 815, 853 |
| BstNI | CCWGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| BstSCI | CCNGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 7 cut(s) | 360, 451, 796, 880, 898, 991, 1287 |
| BstX2I | RGATCY | 1 cut(s) | 1308 |
| BstYI | RGATCY | 1 cut(s) | 1308 |
| Bsu15I | ATCGAT | 1 cut(s) | 1028 |
| BsuRI | GGCC | 3 cut(s) | 39, 54, 938 |
| BsuTUI | ATCGAT | 1 cut(s) | 1028 |
| BtgI | CCRYGG | 2 cut(s) | 49, 75 |
| BtsCI | GGATG | 4 cut(s) | 247, 343, 748, 885 |
| BtsI | GCAGTG | 1 cut(s) | 1170 |
| BtsIMutI | CAGTG | 2 cut(s) | 807, 1170 |
| BveI | ACCTGC | 1 cut(s) | 108 |
| Cac8I | GCNNGC | 6 cut(s) | 180, 556, 730, 786, 891, 1020 |
| CaiI | CAGNNNCTG | 1 cut(s) | 397 |
| CciI | TCATGA | 1 cut(s) | 1428 |
| CfoI | GCGC | 1 cut(s) | 856 |
| Cfr13I | GGNCC | 4 cut(s) | 38, 160, 417, 564 |
| ClaI | ATCGAT | 1 cut(s) | 1028 |
| CseI | GACGC | 3 cut(s) | 332, 1424, 1472 |
| CviAII | CATG | 7 cut(s) | 50, 76, 480, 550, 821, 904, 1429 |
| DdeI | CTNAG | 7 cut(s) | 113, 303, 506, 615, 813, 885, 1358 |
| DpnI | GATC | 3 cut(s) | 993, 1095, 1310 |
| DpnII | GATC | 3 cut(s) | 991, 1093, 1308 |
| EaeI | YGGCCR | 1 cut(s) | 936 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 4 cut(s) | 20, 49, 75, 1322 |
| Eco47I | GGWCC | 3 cut(s) | 160, 417, 564 |
| Eco57I | CTGAAG | 1 cut(s) | 374 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 389 |
| EcoO109I | RGGNCCY | 1 cut(s) | 564 |
| EcoRII | CCWGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| EcoT14I | CCWWGG | 4 cut(s) | 20, 49, 75, 1322 |
| ErhI | CCWWGG | 4 cut(s) | 20, 49, 75, 1322 |
| Esp3I | CGTCTC | 1 cut(s) | 618 |
| FaeI | CATG | 7 cut(s) | 53, 79, 483, 553, 824, 907, 1432 |
| FaqI | GGGAC | 2 cut(s) | 72, 430 |
| FatI | CATG | 7 cut(s) | 49, 75, 479, 549, 820, 903, 1428 |
| Fnu4HI | GCNGC | 8 cut(s) | 246, 374, 440, 810, 894, 912, 1005, 1276 |
| FokI | GGATG | 4 cut(s) | 254, 350, 755, 892 |
| Fsp4HI | GCNGC | 8 cut(s) | 246, 374, 440, 810, 894, 912, 1005, 1276 |
| FspBI | CTAG | 5 cut(s) | 21, 555, 725, 1134, 1313 |
| GlaI | GCGC | 1 cut(s) | 855 |
| GluI | GCNGC | 8 cut(s) | 246, 374, 440, 810, 894, 912, 1005, 1276 |
| GsuI | CTGGAG | 1 cut(s) | 1223 |
| HaeII | RGCGCY | 1 cut(s) | 857 |
| HaeIII | GGCC | 3 cut(s) | 39, 54, 938 |
| HapII | CCGG | 1 cut(s) | 986 |
| HgaI | GACGC | 3 cut(s) | 332, 1424, 1472 |
| HhaI | GCGC | 1 cut(s) | 856 |
| Hin1II | CATG | 7 cut(s) | 53, 79, 483, 553, 824, 907, 1432 |
| Hin6I | GCGC | 1 cut(s) | 854 |
| HinP1I | GCGC | 1 cut(s) | 854 |
| HincII | GTYRAC | 1 cut(s) | 1329 |
| HindII | GTYRAC | 1 cut(s) | 1329 |
| HindIII | AAGCTT | 1 cut(s) | 130 |
| HinfI | GANTC | 1 cut(s) | 619 |
| HpaI | GTTAAC | 1 cut(s) | 1329 |
| HpaII | CCGG | 1 cut(s) | 986 |
| HphI | GGTGA | 2 cut(s) | 38, 308 |
| Hpy166II | GTNNAC | 4 cut(s) | 474, 805, 953, 1329 |
| Hpy188I | TCNGA | 5 cut(s) | 618, 712, 1098, 1361, 1440 |
| Hpy188III | TCNNGA | 5 cut(s) | 347, 392, 689, 760, 1429 |
| Hpy8I | GTNNAC | 4 cut(s) | 474, 805, 953, 1329 |
| Hpy99I | CGWCG | 1 cut(s) | 413 |
| HpyAV | CCTTC | 3 cut(s) | 165, 395, 870 |
| HpyCH4III | ACNGT | 5 cut(s) | 212, 802, 1119, 1198, 1234 |
| HpyCH4IV | ACGT | 5 cut(s) | 408, 598, 611, 836, 1227 |
| HpyCH4V | TGCA | 4 cut(s) | 191, 309, 487, 1392 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 188, 538, 815, 853 |
| HpyF3I | CTNAG | 7 cut(s) | 113, 303, 506, 615, 813, 885, 1358 |
| HpySE526I | ACGT | 5 cut(s) | 408, 598, 611, 836, 1227 |
| Hsp92II | CATG | 7 cut(s) | 53, 79, 483, 553, 824, 907, 1432 |
| HspAI | GCGC | 1 cut(s) | 854 |
| KpnI | GGTACC | 2 cut(s) | 100, 1145 |
| KspAI | GTTAAC | 1 cut(s) | 1329 |
| Kzo9I | GATC | 3 cut(s) | 991, 1093, 1308 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 2 cut(s) | 901, 919 |
| Lsp1109I | GCAGC | 7 cut(s) | 360, 451, 796, 880, 898, 991, 1287 |
| LweI | GCATC | 2 cut(s) | 232, 633 |
| MaeI | CTAG | 5 cut(s) | 21, 555, 725, 1134, 1313 |
| MaeII | ACGT | 5 cut(s) | 408, 598, 611, 836, 1227 |
| MaeIII | GTNAC | 3 cut(s) | 404, 931, 1228 |
| MalI | GATC | 3 cut(s) | 993, 1095, 1310 |
| MboI | GATC | 3 cut(s) | 991, 1093, 1308 |
| MboII | GAAGA | 4 cut(s) | 92, 373, 380, 1056 |
| MflI | RGATCY | 1 cut(s) | 1308 |
| MhlI | GDGCHC | 2 cut(s) | 87, 543 |
| MluCI | AATT | 7 cut(s) | 228, 287, 350, 1295, 1317, 1402, 1414 |
| MmeI | TCCRAC | 1 cut(s) | 1326 |
| MseI | TTAA | 5 cut(s) | 68, 315, 516, 921, 1328 |
| MspA1I | CMGCKG | 2 cut(s) | 373, 510 |
| MspI | CCGG | 1 cut(s) | 986 |
| MspR9I | CCNGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| Mva1269I | GAATGC | 1 cut(s) | 706 |
| MvaI | CCWGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 188, 538, 815, 853 |
| NcoI | CCATGG | 2 cut(s) | 49, 75 |
| NdeII | GATC | 3 cut(s) | 991, 1093, 1308 |
| NheI | GCTAGC | 1 cut(s) | 554 |
| NlaIII | CATG | 7 cut(s) | 53, 79, 483, 553, 824, 907, 1432 |
| NlaIV | GGNNCC | 5 cut(s) | 98, 418, 984, 1143, 1310 |
| NmuCI | GTSAC | 2 cut(s) | 931, 1228 |
| PagI | TCATGA | 1 cut(s) | 1428 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PctI | GAATGC | 1 cut(s) | 706 |
| PfeI | GAWTC | 1 cut(s) | 619 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 55 |
| PfoI | TCCNGGA | 1 cut(s) | 445 |
| PkrI | GCNGC | 8 cut(s) | 247, 375, 441, 811, 895, 913, 1006, 1277 |
| Ppu21I | YACGTR | 1 cut(s) | 837 |
| PpuMI | RGGWCCY | 1 cut(s) | 564 |
| PshBI | ATTAAT | 1 cut(s) | 516 |
| Psp1406I | AACGTT | 1 cut(s) | 598 |
| Psp5II | RGGWCCY | 1 cut(s) | 564 |
| Psp6I | CCWGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| PspGI | CCWGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| PspN4I | GGNNCC | 5 cut(s) | 98, 418, 984, 1143, 1310 |
| PspPI | GGNCC | 4 cut(s) | 38, 160, 417, 564 |
| PspPPI | RGGWCCY | 1 cut(s) | 564 |
| PstNI | CAGNNNCTG | 1 cut(s) | 397 |
| PsuI | RGATCY | 1 cut(s) | 1308 |
| PvuII | CAGCTG | 2 cut(s) | 373, 510 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 5 cut(s) | 68, 315, 516, 921, 1328 |
| SatI | GCNGC | 8 cut(s) | 246, 374, 440, 810, 894, 912, 1005, 1276 |
| Sau3AI | GATC | 3 cut(s) | 991, 1093, 1308 |
| Sau96I | GGNCC | 4 cut(s) | 38, 160, 417, 564 |
| ScaI | AGTACT | 1 cut(s) | 1236 |
| ScrFI | CCNGG | 5 cut(s) | 56, 124, 447, 580, 1241 |
| SduI | GDGCHC | 2 cut(s) | 87, 543 |
| SfaNI | GCATC | 2 cut(s) | 232, 633 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SinI | GGWCC | 3 cut(s) | 160, 417, 564 |
| SmlI | CTYRAG | 3 cut(s) | 590, 848, 1206 |
| SmoI | CTYRAG | 3 cut(s) | 590, 848, 1206 |
| Sse9I | AATT | 7 cut(s) | 228, 287, 350, 1295, 1317, 1402, 1414 |
| SsiI | CCGC | 2 cut(s) | 246, 1477 |
| SspMI | CTAG | 5 cut(s) | 21, 555, 725, 1134, 1313 |
| StyD4I | CCNGG | 5 cut(s) | 54, 122, 445, 578, 1239 |
| StyI | CCWWGG | 4 cut(s) | 20, 49, 75, 1322 |
| TaaI | ACNGT | 5 cut(s) | 212, 802, 1119, 1198, 1234 |
| TaiI | ACGT | 5 cut(s) | 411, 601, 614, 839, 1230 |
| TaqI | TCGA | 3 cut(s) | 411, 674, 1028 |
| TaqII | GACCGA | 1 cut(s) | 535 |
| TasI | AATT | 7 cut(s) | 228, 287, 350, 1295, 1317, 1402, 1414 |
| TatI | WGTACW | 3 cut(s) | 452, 1078, 1234 |
| TauI | GCSGC | 1 cut(s) | 248 |
| TfiI | GAWTC | 1 cut(s) | 619 |
| Tru1I | TTAA | 5 cut(s) | 68, 315, 516, 921, 1328 |
| Tru9I | TTAA | 5 cut(s) | 68, 315, 516, 921, 1328 |
| TscAI | CASTG | 2 cut(s) | 807, 1177 |
| TseFI | GTSAC | 2 cut(s) | 931, 1228 |
| TseI | GCWGC | 7 cut(s) | 373, 439, 809, 893, 911, 1004, 1275 |
| Tsp45I | GTSAC | 2 cut(s) | 931, 1228 |
| TspDTI | ATGAA | 5 cut(s) | 657, 713, 765, 1445, 1457 |
| TspGWI | ACGGA | 1 cut(s) | 652 |
| TspRI | CASTG | 2 cut(s) | 807, 1177 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 55 |
| VpaK11BI | GGWCC | 3 cut(s) | 160, 417, 564 |
| VspI | ATTAAT | 1 cut(s) | 516 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 389 |
| XapI | RAATTY | 2 cut(s) | 1295, 1317 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 330 |
| XmaJI | CCTAGG | 1 cut(s) | 20 |
| XspI | CTAG | 5 cut(s) | 21, 555, 725, 1134, 1313 |
| ZrmI | AGTACT | 1 cut(s) | 1236 |