Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 42 - 186 | 2.9e-12 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 269 |
| AatII | GACGTC | 2 cut(s) | 51, 561 |
| AccB1I | GGYRCC | 2 cut(s) | 170, 252 |
| AccBSI | CCGCTC | 1 cut(s) | 364 |
| AccI | GTMKAC | 1 cut(s) | 165 |
| AccII | CGCG | 2 cut(s) | 224, 518 |
| AciI | CCGC | 9 cut(s) | 6, 141, 156, 222, 256, 314, 364, 367, 518 |
| AcoI | YGGCCR | 3 cut(s) | 3, 336, 489 |
| AcsI | RAATTY | 2 cut(s) | 191, 385 |
| AcuI | CTGAAG | 1 cut(s) | 226 |
| AcyI | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 243 |
| AgsI | TTSAA | 1 cut(s) | 391 |
| AjiI | CACGTC | 1 cut(s) | 375 |
| AjnI | CCWGG | 1 cut(s) | 338 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 353, 385 |
| AluBI | AGCT | 4 cut(s) | 229, 487, 584, 592 |
| AluI | AGCT | 4 cut(s) | 229, 487, 584, 592 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 249 |
| AoxI | GGCC | 4 cut(s) | 3, 148, 336, 489 |
| ApeKI | GCWGC | 2 cut(s) | 226, 310 |
| ApoI | RAATTY | 2 cut(s) | 191, 385 |
| AspLEI | GCGC | 3 cut(s) | 226, 255, 310 |
| AspS9I | GGNCC | 2 cut(s) | 343, 606 |
| AsuC2I | CCSGG | 1 cut(s) | 493 |
| AsuHPI | GGTGA | 4 cut(s) | 130, 223, 457, 514 |
| AvaII | GGWCC | 2 cut(s) | 343, 606 |
| BanI | GGYRCC | 2 cut(s) | 170, 252 |
| BanII | GRGCYC | 1 cut(s) | 219 |
| BbvI | GCAGC | 2 cut(s) | 238, 297 |
| BccI | CCATC | 2 cut(s) | 182, 502 |
| BceAI | ACGGC | 3 cut(s) | 163, 184, 351 |
| BciT130I | CCWGG | 1 cut(s) | 340 |
| BcnI | CCSGG | 1 cut(s) | 493 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BfmI | CTRYAG | 1 cut(s) | 416 |
| BfoI | RGCGCY | 2 cut(s) | 256, 311 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 156 |
| BisI | GCNGC | 7 cut(s) | 6, 157, 227, 256, 311, 314, 365 |
| BlsI | GCNGC | 7 cut(s) | 7, 158, 228, 257, 312, 315, 366 |
| Bme1390I | CCNGG | 2 cut(s) | 340, 493 |
| Bme18I | GGWCC | 2 cut(s) | 343, 606 |
| BmgBI | CACGTC | 1 cut(s) | 375 |
| BmgT120I | GGNCC | 2 cut(s) | 343, 606 |
| BmiI | GGNNCC | 4 cut(s) | 172, 254, 328, 344 |
| BmrFI | CCNGG | 2 cut(s) | 340, 493 |
| BpmI | CTGGAG | 1 cut(s) | 380 |
| BpuMI | CCSGG | 1 cut(s) | 493 |
| BsaHI | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| BsaI | GGTCTC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 5 cut(s) | 145, 208, 339, 429, 609 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 353, 383 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 243 |
| Bse118I | RCCGGY | 2 cut(s) | 266, 304 |
| BseBI | CCWGG | 1 cut(s) | 340 |
| BseDI | CCNNGG | 5 cut(s) | 145, 208, 339, 429, 609 |
| BseGI | GGATG | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BseMII | CTCAG | 1 cut(s) | 530 |
| BseRI | GAGGAG | 4 cut(s) | 13, 16, 44, 289 |
| BseXI | GCAGC | 2 cut(s) | 238, 297 |
| Bsh1236I | CGCG | 2 cut(s) | 224, 518 |
| BshFI | GGCC | 4 cut(s) | 5, 150, 338, 491 |
| BshNI | GGYRCC | 2 cut(s) | 170, 252 |
| BsiSI | CCGG | 4 cut(s) | 267, 305, 492, 551 |
| BslFI | GGGAC | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsmFI | GGGAC | 1 cut(s) | 356 |
| BsnI | GGCC | 4 cut(s) | 5, 150, 338, 491 |
| Bso31I | GGTCTC | 1 cut(s) | 120 |
| Bsp1286I | GDGCHC | 1 cut(s) | 219 |
| Bsp143I | GATC | 1 cut(s) | 412 |
| BspACI | CCGC | 9 cut(s) | 6, 141, 156, 222, 256, 314, 364, 367, 518 |
| BspANI | GGCC | 4 cut(s) | 5, 150, 338, 491 |
| BspCNI | CTCAG | 1 cut(s) | 531 |
| BspFNI | CGCG | 2 cut(s) | 224, 518 |
| BspHI | TCATGA | 2 cut(s) | 123, 396 |
| BspLI | GGNNCC | 4 cut(s) | 172, 254, 328, 344 |
| BspMAI | CTGCAG | 1 cut(s) | 420 |
| BspT107I | GGYRCC | 2 cut(s) | 170, 252 |
| BspTNI | GGTCTC | 1 cut(s) | 120 |
| BsrBI | CCGCTC | 1 cut(s) | 364 |
| BsrFI | RCCGGY | 2 cut(s) | 266, 304 |
| BssAI | RCCGGY | 2 cut(s) | 266, 304 |
| BssECI | CCNNGG | 5 cut(s) | 145, 208, 339, 429, 609 |
| BssMI | GATC | 1 cut(s) | 412 |
| BssNI | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| BssT1I | CCWWGG | 3 cut(s) | 208, 429, 609 |
| Bst2UI | CCWGG | 1 cut(s) | 340 |
| BstACI | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| BstC8I | GCNNGC | 6 cut(s) | 215, 268, 306, 489, 582, 594 |
| BstDEI | CTNAG | 1 cut(s) | 539 |
| BstDSI | CCRYGG | 1 cut(s) | 145 |
| BstF5I | GGATG | 1 cut(s) | 59 |
| BstFNI | CGCG | 2 cut(s) | 224, 518 |
| BstH2I | RGCGCY | 2 cut(s) | 256, 311 |
| BstHHI | GCGC | 3 cut(s) | 226, 255, 310 |
| BstKTI | GATC | 1 cut(s) | 415 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 1 cut(s) | 412 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 156, 203, 223, 301, 310, 364 |
| BstNI | CCWGG | 1 cut(s) | 340 |
| BstSCI | CCNGG | 2 cut(s) | 338, 491 |
| BstSFI | CTRYAG | 1 cut(s) | 416 |
| BstUI | CGCG | 2 cut(s) | 224, 518 |
| BstV1I | GCAGC | 2 cut(s) | 238, 297 |
| BsuRI | GGCC | 4 cut(s) | 5, 150, 338, 491 |
| BtgI | CCRYGG | 1 cut(s) | 145 |
| BtrI | CACGTC | 1 cut(s) | 375 |
| BtsCI | GGATG | 1 cut(s) | 59 |
| Cac8I | GCNNGC | 6 cut(s) | 215, 268, 306, 489, 582, 594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 249 |
| CciI | TCATGA | 2 cut(s) | 123, 396 |
| CfoI | GCGC | 3 cut(s) | 226, 255, 310 |
| Cfr10I | RCCGGY | 2 cut(s) | 266, 304 |
| Cfr13I | GGNCC | 2 cut(s) | 343, 606 |
| CseI | GACGC | 4 cut(s) | 259, 272, 364, 524 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CviAII | CATG | 4 cut(s) | 76, 124, 397, 628 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DdeI | CTNAG | 1 cut(s) | 539 |
| DinI | GGCGCC | 1 cut(s) | 254 |
| DpnI | GATC | 1 cut(s) | 414 |
| DpnII | GATC | 1 cut(s) | 412 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 269 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 269 |
| EaeI | YGGCCR | 3 cut(s) | 3, 336, 489 |
| Eco130I | CCWWGG | 3 cut(s) | 208, 429, 609 |
| Eco24I | GRGCYC | 1 cut(s) | 219 |
| Eco31I | GGTCTC | 1 cut(s) | 120 |
| Eco47I | GGWCC | 2 cut(s) | 343, 606 |
| Eco57I | CTGAAG | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 343 |
| EcoRII | CCWGG | 1 cut(s) | 338 |
| EcoT14I | CCWWGG | 3 cut(s) | 208, 429, 609 |
| EcoT38I | GRGCYC | 1 cut(s) | 219 |
| EgeI | GGCGCC | 1 cut(s) | 254 |
| EheI | GGCGCC | 1 cut(s) | 254 |
| ErhI | CCWWGG | 3 cut(s) | 208, 429, 609 |
| FaeI | CATG | 4 cut(s) | 79, 127, 400, 631 |
| FaqI | GGGAC | 1 cut(s) | 356 |
| FatI | CATG | 4 cut(s) | 75, 123, 396, 627 |
| FauNDI | CATATG | 1 cut(s) | 65 |
| FblI | GTMKAC | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 157, 227, 256, 311, 314, 365 |
| FokI | GGATG | 1 cut(s) | 46 |
| FriOI | GRGCYC | 1 cut(s) | 219 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 157, 227, 256, 311, 314, 365 |
| GlaI | GCGC | 3 cut(s) | 225, 254, 309 |
| GluI | GCNGC | 7 cut(s) | 6, 157, 227, 256, 311, 314, 365 |
| GsuI | CTGGAG | 1 cut(s) | 380 |
| HaeII | RGCGCY | 2 cut(s) | 256, 311 |
| HaeIII | GGCC | 4 cut(s) | 5, 150, 338, 491 |
| HapII | CCGG | 4 cut(s) | 267, 305, 492, 551 |
| HgaI | GACGC | 4 cut(s) | 259, 272, 364, 524 |
| HhaI | GCGC | 3 cut(s) | 226, 255, 310 |
| Hin1I | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| Hin1II | CATG | 4 cut(s) | 79, 127, 400, 631 |
| Hin6I | GCGC | 3 cut(s) | 224, 253, 308 |
| HinP1I | GCGC | 3 cut(s) | 224, 253, 308 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HindIII | AAGCTT | 1 cut(s) | 582 |
| HinfI | GANTC | 2 cut(s) | 92, 440 |
| HpaII | CCGG | 4 cut(s) | 267, 305, 492, 551 |
| HphI | GGTGA | 4 cut(s) | 130, 223, 457, 514 |
| Hpy166II | GTNNAC | 2 cut(s) | 166, 372 |
| Hpy188I | TCNGA | 5 cut(s) | 238, 331, 412, 540, 589 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 397 |
| Hpy8I | GTNNAC | 2 cut(s) | 166, 372 |
| Hpy99I | CGWCG | 4 cut(s) | 167, 170, 266, 518 |
| HpyCH4IV | ACGT | 4 cut(s) | 48, 162, 374, 558 |
| HpyCH4V | TGCA | 3 cut(s) | 69, 418, 596 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 156, 203, 223, 301, 310, 364 |
| HpyF3I | CTNAG | 1 cut(s) | 539 |
| HpySE526I | ACGT | 4 cut(s) | 48, 162, 374, 558 |
| Hsp92I | GRCGYC | 5 cut(s) | 48, 253, 264, 270, 558 |
| Hsp92II | CATG | 4 cut(s) | 79, 127, 400, 631 |
| HspAI | GCGC | 3 cut(s) | 224, 253, 308 |
| KasI | GGCGCC | 1 cut(s) | 252 |
| KroI | GCCGGC | 2 cut(s) | 266, 304 |
| KroNI | GCCGGC | 2 cut(s) | 268, 306 |
| Kzo9I | GATC | 1 cut(s) | 412 |
| LmnI | GCTCC | 3 cut(s) | 332, 361, 589 |
| Lsp1109I | GCAGC | 2 cut(s) | 238, 297 |
| MaeII | ACGT | 4 cut(s) | 48, 162, 374, 558 |
| MaeIII | GTNAC | 2 cut(s) | 530, 622 |
| MalI | GATC | 1 cut(s) | 414 |
| MbiI | CCGCTC | 1 cut(s) | 364 |
| MboI | GATC | 1 cut(s) | 412 |
| MboII | GAAGA | 1 cut(s) | 127 |
| MhlI | GDGCHC | 1 cut(s) | 219 |
| MluCI | AATT | 2 cut(s) | 191, 385 |
| Mly113I | GGCGCC | 1 cut(s) | 253 |
| MlyI | GAGTC | 1 cut(s) | 434 |
| MmeI | TCCRAC | 2 cut(s) | 261, 354 |
| MreI | CGCCGGCG | 2 cut(s) | 266, 304 |
| MroNI | GCCGGC | 2 cut(s) | 266, 304 |
| MslI | CAYNNNNRTG | 2 cut(s) | 64, 377 |
| MspI | CCGG | 4 cut(s) | 267, 305, 492, 551 |
| MspR9I | CCNGG | 2 cut(s) | 340, 493 |
| MvaI | CCWGG | 1 cut(s) | 340 |
| MvnI | CGCG | 2 cut(s) | 224, 518 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 156, 203, 223, 301, 310, 364 |
| NaeI | GCCGGC | 2 cut(s) | 268, 306 |
| NarI | GGCGCC | 1 cut(s) | 253 |
| NciI | CCSGG | 1 cut(s) | 493 |
| NdeI | CATATG | 1 cut(s) | 65 |
| NdeII | GATC | 1 cut(s) | 412 |
| NgoMIV | GCCGGC | 2 cut(s) | 266, 304 |
| NlaIII | CATG | 4 cut(s) | 79, 127, 400, 631 |
| NlaIV | GGNNCC | 4 cut(s) | 172, 254, 328, 344 |
| NmuCI | GTSAC | 2 cut(s) | 530, 622 |
| PagI | TCATGA | 2 cut(s) | 123, 396 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 210, 267, 380 |
| PdiI | GCCGGC | 2 cut(s) | 268, 306 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 7 cut(s) | 7, 158, 228, 257, 312, 315, 366 |
| PleI | GAGTC | 1 cut(s) | 434 |
| PluTI | GGCGCC | 1 cut(s) | 256 |
| PpsI | GAGTC | 1 cut(s) | 434 |
| PpuMI | RGGWCCY | 1 cut(s) | 343 |
| Psp5II | RGGWCCY | 1 cut(s) | 343 |
| Psp6I | CCWGG | 1 cut(s) | 338 |
| PspGI | CCWGG | 1 cut(s) | 338 |
| PspN4I | GGNNCC | 4 cut(s) | 172, 254, 328, 344 |
| PspPI | GGNCC | 2 cut(s) | 343, 606 |
| PspPPI | RGGWCCY | 1 cut(s) | 343 |
| PstI | CTGCAG | 1 cut(s) | 420 |
| PstNI | CAGNNNCTG | 1 cut(s) | 249 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| RseI | CAYNNNNRTG | 2 cut(s) | 64, 377 |
| SalI | GTCGAC | 1 cut(s) | 164 |
| SatI | GCNGC | 7 cut(s) | 6, 157, 227, 256, 311, 314, 365 |
| Sau3AI | GATC | 1 cut(s) | 412 |
| Sau96I | GGNCC | 2 cut(s) | 343, 606 |
| SchI | GAGTC | 1 cut(s) | 434 |
| ScrFI | CCNGG | 2 cut(s) | 340, 493 |
| SduI | GDGCHC | 1 cut(s) | 219 |
| SfcI | CTRYAG | 1 cut(s) | 416 |
| SfoI | GGCGCC | 1 cut(s) | 254 |
| SgrAI | CRCCGGYG | 2 cut(s) | 266, 304 |
| SgrDI | CGTCGACG | 1 cut(s) | 164 |
| SinI | GGWCC | 2 cut(s) | 343, 606 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 64, 377 |
| Sse9I | AATT | 2 cut(s) | 191, 385 |
| SsiI | CCGC | 9 cut(s) | 6, 141, 156, 222, 256, 314, 364, 367, 518 |
| SspDI | GGCGCC | 1 cut(s) | 252 |
| StyD4I | CCNGG | 2 cut(s) | 338, 491 |
| StyI | CCWWGG | 3 cut(s) | 208, 429, 609 |
| TaiI | ACGT | 4 cut(s) | 51, 165, 377, 561 |
| TaqI | TCGA | 3 cut(s) | 90, 165, 383 |
| TasI | AATT | 2 cut(s) | 191, 385 |
| TatI | WGTACW | 1 cut(s) | 402 |
| TauI | GCSGC | 5 cut(s) | 8, 159, 258, 316, 367 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| TseFI | GTSAC | 2 cut(s) | 530, 622 |
| TseI | GCWGC | 2 cut(s) | 226, 310 |
| Tsp45I | GTSAC | 2 cut(s) | 530, 622 |
| TspDTI | ATGAA | 3 cut(s) | 97, 413, 647 |
| VpaK11BI | GGWCC | 2 cut(s) | 343, 606 |
| XapI | RAATTY | 2 cut(s) | 191, 385 |
| XmiI | GTMKAC | 1 cut(s) | 165 |
| ZraI | GACGTC | 2 cut(s) | 49, 559 |