GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 3 - 125 | 3e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 435 |
| AciI | CCGC | 1 cut(s) | 190 |
| AclWI | GGATC | 2 cut(s) | 200, 440 |
| AcuI | CTGAAG | 2 cut(s) | 170, 384 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| Alw21I | GWGCWC | 1 cut(s) | 433 |
| AlwI | GGATC | 2 cut(s) | 200, 440 |
| AoxI | GGCC | 1 cut(s) | 347 |
| ApeKI | GCWGC | 1 cut(s) | 14 |
| AspLEI | GCGC | 1 cut(s) | 437 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 433 |
| BccI | CCATC | 1 cut(s) | 286 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BfaI | CTAG | 3 cut(s) | 102, 117, 454 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| Bme1390I | CCNGG | 1 cut(s) | 450 |
| BmrFI | CCNGG | 1 cut(s) | 450 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| Bpu10I | CCTNAGC | 1 cut(s) | 66 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| Bse1I | ACTGG | 1 cut(s) | 381 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseMII | CTCAG | 1 cut(s) | 358 |
| BseNI | ACTGG | 1 cut(s) | 381 |
| BsgI | GTGCAG | 1 cut(s) | 146 |
| Bsh1236I | CGCG | 1 cut(s) | 435 |
| BshFI | GGCC | 1 cut(s) | 349 |
| BsiHKAI | GWGCWC | 1 cut(s) | 433 |
| BsnI | GGCC | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 1 cut(s) | 433 |
| Bsp143I | GATC | 4 cut(s) | 175, 192, 208, 445 |
| BspACI | CCGC | 1 cut(s) | 190 |
| BspANI | GGCC | 1 cut(s) | 349 |
| BspCNI | CTCAG | 1 cut(s) | 357 |
| BspFNI | CGCG | 1 cut(s) | 435 |
| BspPI | GGATC | 2 cut(s) | 200, 440 |
| BsrI | ACTGG | 1 cut(s) | 381 |
| BssMI | GATC | 4 cut(s) | 175, 192, 208, 445 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 1 cut(s) | 270 |
| BstC8I | GCNNGC | 1 cut(s) | 433 |
| BstDEI | CTNAG | 2 cut(s) | 66, 344 |
| BstFNI | CGCG | 1 cut(s) | 435 |
| BstHHI | GCGC | 1 cut(s) | 437 |
| BstKTI | GATC | 4 cut(s) | 178, 195, 211, 448 |
| BstMBI | GATC | 4 cut(s) | 175, 192, 208, 445 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 419, 428 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstSCI | CCNGG | 1 cut(s) | 448 |
| BstUI | CGCG | 1 cut(s) | 435 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 374 |
| Cac8I | GCNNGC | 1 cut(s) | 433 |
| CfoI | GCGC | 1 cut(s) | 437 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CviAII | CATG | 3 cut(s) | 89, 164, 311 |
| CviJI | RGCY | 6 cut(s) | 218, 263, 349, 362, 380, 453 |
| CviKI_1 | RGCY | 6 cut(s) | 218, 263, 349, 362, 380, 453 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DdeI | CTNAG | 2 cut(s) | 66, 344 |
| DpnI | GATC | 4 cut(s) | 177, 194, 210, 447 |
| DpnII | GATC | 4 cut(s) | 175, 192, 208, 445 |
| Eco147I | AGGCCT | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 2 cut(s) | 170, 384 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| FaeI | CATG | 3 cut(s) | 92, 167, 314 |
| FaiI | YATR | 7 cut(s) | 90, 165, 312, 416, 420, 442, 444 |
| FatI | CATG | 3 cut(s) | 88, 163, 310 |
| FauNDI | CATATG | 1 cut(s) | 442 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| FspBI | CTAG | 3 cut(s) | 102, 117, 454 |
| GlaI | GCGC | 1 cut(s) | 436 |
| GluI | GCNGC | 1 cut(s) | 15 |
| HaeIII | GGCC | 1 cut(s) | 349 |
| HhaI | GCGC | 1 cut(s) | 437 |
| Hin1II | CATG | 3 cut(s) | 92, 167, 314 |
| Hin6I | GCGC | 1 cut(s) | 435 |
| HinP1I | GCGC | 1 cut(s) | 435 |
| HinfI | GANTC | 4 cut(s) | 4, 167, 200, 368 |
| Hpy166II | GTNNAC | 1 cut(s) | 275 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 204 |
| Hpy8I | GTNNAC | 1 cut(s) | 275 |
| HpyAV | CCTTC | 1 cut(s) | 194 |
| HpyCH4III | ACNGT | 1 cut(s) | 270 |
| HpyCH4V | TGCA | 3 cut(s) | 35, 127, 145 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 419, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 344 |
| Hsp92II | CATG | 3 cut(s) | 92, 167, 314 |
| HspAI | GCGC | 1 cut(s) | 435 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| Kzo9I | GATC | 4 cut(s) | 175, 192, 208, 445 |
| LpnPI | CCDG | 6 cut(s) | 217, 301, 311, 331, 362, 435 |
| MaeI | CTAG | 3 cut(s) | 102, 117, 454 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 4 cut(s) | 177, 194, 210, 447 |
| MboI | GATC | 4 cut(s) | 175, 192, 208, 445 |
| MboII | GAAGA | 2 cut(s) | 257, 377 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MhlI | GDGCHC | 1 cut(s) | 433 |
| MluCI | AATT | 3 cut(s) | 135, 212, 353 |
| MlyI | GAGTC | 1 cut(s) | 176 |
| MmeI | TCCRAC | 1 cut(s) | 205 |
| MnlI | CCTC | 1 cut(s) | 360 |
| MseI | TTAA | 3 cut(s) | 153, 356, 404 |
| MspA1I | CMGCKG | 1 cut(s) | 190 |
| MspR9I | CCNGG | 1 cut(s) | 450 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MvnI | CGCG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 419, 428 |
| NdeI | CATATG | 1 cut(s) | 442 |
| NdeII | GATC | 4 cut(s) | 175, 192, 208, 445 |
| NlaIII | CATG | 3 cut(s) | 92, 167, 314 |
| PceI | AGGCCT | 1 cut(s) | 349 |
| PfeI | GAWTC | 2 cut(s) | 200, 368 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| PleI | GAGTC | 1 cut(s) | 175 |
| PpsI | GAGTC | 1 cut(s) | 175 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| SaqAI | TTAA | 3 cut(s) | 153, 356, 404 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau3AI | GATC | 4 cut(s) | 175, 192, 208, 445 |
| SchI | GAGTC | 1 cut(s) | 176 |
| ScrFI | CCNGG | 1 cut(s) | 450 |
| SduI | GDGCHC | 1 cut(s) | 433 |
| SetI | ASST | 2 cut(s) | 186, 430 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| Sse9I | AATT | 3 cut(s) | 135, 212, 353 |
| SseBI | AGGCCT | 1 cut(s) | 349 |
| SsiI | CCGC | 1 cut(s) | 190 |
| SspI | AATATT | 1 cut(s) | 151 |
| SspMI | CTAG | 3 cut(s) | 102, 117, 454 |
| StuI | AGGCCT | 1 cut(s) | 349 |
| StyD4I | CCNGG | 1 cut(s) | 448 |
| TaaI | ACNGT | 1 cut(s) | 270 |
| TasI | AATT | 3 cut(s) | 135, 212, 353 |
| TfiI | GAWTC | 2 cut(s) | 200, 368 |
| Tru1I | TTAA | 3 cut(s) | 153, 356, 404 |
| Tru9I | TTAA | 3 cut(s) | 153, 356, 404 |
| TscAI | CASTG | 1 cut(s) | 381 |
| TseI | GCWGC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 4 cut(s) | 105, 146, 258, 299 |
| TspRI | CASTG | 1 cut(s) | 381 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 211 |
| XspI | CTAG | 3 cut(s) | 102, 117, 454 |