gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 285 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AluBI | AGCT | 2 cut(s) | 153, 215 |
| AluI | AGCT | 2 cut(s) | 153, 215 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| AoxI | GGCC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 1 cut(s) | 353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 262, 294 |
| BalI | TGGCCA | 1 cut(s) | 287 |
| BbvI | GCAGC | 1 cut(s) | 365 |
| BccI | CCATC | 1 cut(s) | 185 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BisI | GCNGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 1 cut(s) | 355 |
| BpuEI | CTTGAG | 2 cut(s) | 329, 368 |
| BsaBI | GATNNNNATC | 1 cut(s) | 129 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| Bse8I | GATNNNNATC | 1 cut(s) | 129 |
| BseJI | GATNNNNATC | 1 cut(s) | 129 |
| BseMII | CTCAG | 3 cut(s) | 53, 185, 207 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseXI | GCAGC | 1 cut(s) | 365 |
| BsgI | GTGCAG | 1 cut(s) | 300 |
| BshFI | GGCC | 1 cut(s) | 287 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| BsnI | GGCC | 1 cut(s) | 287 |
| Bsp143I | GATC | 2 cut(s) | 124, 241 |
| BspANI | GGCC | 1 cut(s) | 287 |
| BspCNI | CTCAG | 3 cut(s) | 52, 184, 208 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssMI | GATC | 2 cut(s) | 124, 241 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 49 |
| BstDEI | CTNAG | 4 cut(s) | 39, 171, 216, 275 |
| BstKTI | GATC | 2 cut(s) | 127, 244 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 2 cut(s) | 124, 241 |
| BstNSI | RCATGY | 1 cut(s) | 328 |
| BstV1I | GCAGC | 1 cut(s) | 365 |
| BsuRI | GGCC | 1 cut(s) | 287 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 157, 192, 308, 343 |
| CviAII | CATG | 5 cut(s) | 93, 162, 289, 294, 325 |
| CviJI | RGCY | 6 cut(s) | 97, 153, 195, 215, 287, 337 |
| CviKI_1 | RGCY | 6 cut(s) | 97, 153, 195, 215, 287, 337 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 4 cut(s) | 39, 171, 216, 275 |
| DpnI | GATC | 2 cut(s) | 126, 243 |
| DpnII | GATC | 2 cut(s) | 124, 241 |
| EaeI | YGGCCR | 1 cut(s) | 285 |
| FaeI | CATG | 5 cut(s) | 96, 165, 292, 297, 328 |
| FatI | CATG | 5 cut(s) | 92, 161, 288, 293, 324 |
| Fnu4HI | GCNGC | 1 cut(s) | 354 |
| Fsp4HI | GCNGC | 1 cut(s) | 354 |
| GluI | GCNGC | 1 cut(s) | 354 |
| HaeIII | GGCC | 1 cut(s) | 287 |
| Hin1II | CATG | 5 cut(s) | 96, 165, 292, 297, 328 |
| HinfI | GANTC | 3 cut(s) | 77, 110, 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 222 |
| Hpy188I | TCNGA | 1 cut(s) | 42 |
| Hpy188III | TCNNGA | 1 cut(s) | 198 |
| Hpy8I | GTNNAC | 1 cut(s) | 222 |
| HpyAV | CCTTC | 1 cut(s) | 124 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 49 |
| HpyCH4V | TGCA | 5 cut(s) | 185, 317, 353, 379, 397 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 171, 216, 275 |
| Hsp92II | CATG | 5 cut(s) | 96, 165, 292, 297, 328 |
| Kzo9I | GATC | 2 cut(s) | 124, 241 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 3 cut(s) | 183, 214, 294 |
| Lsp1109I | GCAGC | 1 cut(s) | 365 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 2 cut(s) | 126, 243 |
| MboI | GATC | 2 cut(s) | 124, 241 |
| MboII | GAAGA | 1 cut(s) | 47 |
| MlsI | TGGCCA | 1 cut(s) | 287 |
| MluNI | TGGCCA | 1 cut(s) | 287 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 2 cut(s) | 105, 283 |
| Mox20I | TGGCCA | 1 cut(s) | 287 |
| MscI | TGGCCA | 1 cut(s) | 287 |
| MseI | TTAA | 2 cut(s) | 120, 255 |
| Msp20I | TGGCCA | 1 cut(s) | 287 |
| MspA1I | CMGCKG | 1 cut(s) | 215 |
| NdeII | GATC | 2 cut(s) | 124, 241 |
| NlaIII | CATG | 5 cut(s) | 96, 165, 292, 297, 328 |
| NspI | RCATGY | 1 cut(s) | 328 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PfeI | GAWTC | 2 cut(s) | 110, 400 |
| PkrI | GCNGC | 1 cut(s) | 355 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PscI | ACATGT | 1 cut(s) | 324 |
| PvuII | CAGCTG | 1 cut(s) | 215 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| SaqAI | TTAA | 2 cut(s) | 120, 255 |
| SatI | GCNGC | 1 cut(s) | 354 |
| Sau3AI | GATC | 2 cut(s) | 124, 241 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SetI | ASST | 3 cut(s) | 155, 217, 361 |
| SmlI | CTYRAG | 3 cut(s) | 18, 344, 383 |
| SmoI | CTYRAG | 3 cut(s) | 18, 344, 383 |
| SspI | AATATT | 1 cut(s) | 373 |
| TaaI | ACNGT | 2 cut(s) | 31, 49 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TfiI | GAWTC | 2 cut(s) | 110, 400 |
| Tru1I | TTAA | 2 cut(s) | 120, 255 |
| Tru9I | TTAA | 2 cut(s) | 120, 255 |
| TseI | GCWGC | 1 cut(s) | 353 |
| XceI | RCATGY | 1 cut(s) | 328 |