ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 217 | 8.5e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 400 |
| AciI | CCGC | 1 cut(s) | 329 |
| AclWI | GGATC | 3 cut(s) | 266, 296, 612 |
| AcsI | RAATTY | 3 cut(s) | 81, 332, 539 |
| AcuI | CTGAAG | 2 cut(s) | 240, 389 |
| AfaI | GTAC | 1 cut(s) | 455 |
| AfeI | AGCGCT | 1 cut(s) | 449 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 436, 600 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 3 cut(s) | 297, 570, 628 |
| AluBI | AGCT | 6 cut(s) | 20, 245, 350, 373, 409, 485 |
| AluI | AGCT | 6 cut(s) | 20, 245, 350, 373, 409, 485 |
| Alw21I | GWGCWC | 1 cut(s) | 352 |
| AlwI | GGATC | 3 cut(s) | 266, 296, 612 |
| Ama87I | CYCGRG | 1 cut(s) | 617 |
| Aor51HI | AGCGCT | 1 cut(s) | 449 |
| AoxI | GGCC | 2 cut(s) | 159, 608 |
| ApeKI | GCWGC | 3 cut(s) | 65, 445, 512 |
| ApoI | RAATTY | 3 cut(s) | 81, 332, 539 |
| AspLEI | GCGC | 1 cut(s) | 450 |
| AspS9I | GGNCC | 2 cut(s) | 159, 268 |
| AvaI | CYCGRG | 1 cut(s) | 617 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BanII | GRGCYC | 1 cut(s) | 352 |
| Bbv12I | GWGCWC | 1 cut(s) | 352 |
| BbvCI | CCTCAGC | 1 cut(s) | 612 |
| BbvI | GCAGC | 3 cut(s) | 52, 457, 524 |
| BccI | CCATC | 2 cut(s) | 224, 605 |
| BceAI | ACGGC | 2 cut(s) | 477, 598 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 501, 535 |
| BciVI | GTATCC | 1 cut(s) | 314 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BfmI | CTRYAG | 1 cut(s) | 87 |
| BfoI | RGCGCY | 1 cut(s) | 451 |
| BfuI | GTATCC | 1 cut(s) | 314 |
| BisI | GCNGC | 3 cut(s) | 66, 446, 513 |
| BlsI | GCNGC | 3 cut(s) | 67, 447, 514 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmeT110I | CYCGRG | 1 cut(s) | 617 |
| BmgT120I | GGNCC | 2 cut(s) | 159, 268 |
| BmiI | GGNNCC | 1 cut(s) | 269 |
| BmrI | ACTGGG | 1 cut(s) | 143 |
| BmuI | ACTGGG | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BsaBI | GATNNNNATC | 1 cut(s) | 635 |
| BsaJI | CCNNGG | 1 cut(s) | 618 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 436, 600 |
| Bse1I | ACTGG | 1 cut(s) | 149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 635 |
| BseDI | CCNNGG | 1 cut(s) | 618 |
| BseGI | GGATG | 2 cut(s) | 38, 144 |
| BseJI | GATNNNNATC | 1 cut(s) | 635 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 436, 600 |
| BseMII | CTCAG | 2 cut(s) | 146, 626 |
| BseNI | ACTGG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 635 |
| BseXI | GCAGC | 3 cut(s) | 52, 457, 524 |
| BseYI | CCCAGC | 1 cut(s) | 241 |
| BshFI | GGCC | 2 cut(s) | 161, 610 |
| BsiHKAI | GWGCWC | 1 cut(s) | 352 |
| BsiHKCI | CYCGRG | 1 cut(s) | 617 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 436, 600 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| BsnI | GGCC | 2 cut(s) | 161, 610 |
| BsoBI | CYCGRG | 1 cut(s) | 617 |
| Bsp1286I | GDGCHC | 1 cut(s) | 352 |
| Bsp143I | GATC | 3 cut(s) | 258, 288, 604 |
| BspACI | CCGC | 1 cut(s) | 329 |
| BspANI | GGCC | 2 cut(s) | 161, 610 |
| BspCNI | CTCAG | 2 cut(s) | 147, 625 |
| BspLI | GGNNCC | 1 cut(s) | 269 |
| BspPI | GGATC | 3 cut(s) | 266, 296, 612 |
| BsrI | ACTGG | 1 cut(s) | 149 |
| BssECI | CCNNGG | 1 cut(s) | 618 |
| BssMI | GATC | 3 cut(s) | 258, 288, 604 |
| Bst4CI | ACNGT | 2 cut(s) | 91, 129 |
| Bst6I | CTCTTC | 2 cut(s) | 184, 216 |
| BstC8I | GCNNGC | 1 cut(s) | 443 |
| BstDEI | CTNAG | 3 cut(s) | 111, 155, 612 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 598 |
| BstF5I | GGATG | 2 cut(s) | 38, 144 |
| BstH2I | RGCGCY | 1 cut(s) | 451 |
| BstHHI | GCGC | 1 cut(s) | 450 |
| BstKTI | GATC | 3 cut(s) | 261, 291, 607 |
| BstMBI | GATC | 3 cut(s) | 258, 288, 604 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 386, 447 |
| BstNSI | RCATGY | 1 cut(s) | 172 |
| BstSFI | CTRYAG | 1 cut(s) | 87 |
| BstV1I | GCAGC | 3 cut(s) | 52, 457, 524 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 56 |
| BsuI | GTATCC | 1 cut(s) | 314 |
| BsuRI | GGCC | 2 cut(s) | 161, 610 |
| BtsCI | GGATG | 2 cut(s) | 38, 144 |
| BtsI | GCAGTG | 1 cut(s) | 203 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| Cac8I | GCNNGC | 1 cut(s) | 443 |
| CfoI | GCGC | 1 cut(s) | 450 |
| Cfr13I | GGNCC | 2 cut(s) | 159, 268 |
| CseI | GACGC | 1 cut(s) | 541 |
| Csp6I | GTAC | 1 cut(s) | 454 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 195, 230 |
| CviAII | CATG | 3 cut(s) | 169, 436, 457 |
| CviQI | GTAC | 1 cut(s) | 454 |
| DdeI | CTNAG | 3 cut(s) | 111, 155, 612 |
| DpnI | GATC | 3 cut(s) | 260, 290, 606 |
| DpnII | GATC | 3 cut(s) | 258, 288, 604 |
| Eam1104I | CTCTTC | 2 cut(s) | 184, 216 |
| EarI | CTCTTC | 2 cut(s) | 184, 216 |
| Ecl136II | GAGCTC | 1 cut(s) | 350 |
| Eco24I | GRGCYC | 1 cut(s) | 352 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco47III | AGCGCT | 1 cut(s) | 449 |
| Eco53kI | GAGCTC | 1 cut(s) | 350 |
| Eco57I | CTGAAG | 2 cut(s) | 240, 389 |
| Eco88I | CYCGRG | 1 cut(s) | 617 |
| EcoICRI | GAGCTC | 1 cut(s) | 350 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 598 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoT38I | GRGCYC | 1 cut(s) | 352 |
| FaeI | CATG | 3 cut(s) | 172, 439, 460 |
| FaiI | YATR | 7 cut(s) | 95, 170, 249, 437, 458, 472, 579 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 3 cut(s) | 168, 435, 456 |
| FblI | GTMKAC | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 446, 513 |
| FokI | GGATG | 2 cut(s) | 25, 131 |
| FriOI | GRGCYC | 1 cut(s) | 352 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 446, 513 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GlaI | GCGC | 1 cut(s) | 449 |
| GluI | GCNGC | 3 cut(s) | 66, 446, 513 |
| GsaI | CCCAGC | 1 cut(s) | 245 |
| HaeII | RGCGCY | 1 cut(s) | 451 |
| HaeIII | GGCC | 2 cut(s) | 161, 610 |
| HgaI | GACGC | 1 cut(s) | 541 |
| HhaI | GCGC | 1 cut(s) | 450 |
| Hin1II | CATG | 3 cut(s) | 172, 439, 460 |
| Hin6I | GCGC | 1 cut(s) | 448 |
| HinP1I | GCGC | 1 cut(s) | 448 |
| HinfI | GANTC | 3 cut(s) | 26, 415, 533 |
| Hpy166II | GTNNAC | 3 cut(s) | 203, 344, 401 |
| Hpy188I | TCNGA | 5 cut(s) | 156, 166, 282, 320, 538 |
| Hpy188III | TCNNGA | 3 cut(s) | 214, 262, 412 |
| Hpy8I | GTNNAC | 3 cut(s) | 203, 344, 401 |
| HpyAV | CCTTC | 3 cut(s) | 24, 64, 179 |
| HpyCH4III | ACNGT | 2 cut(s) | 91, 129 |
| HpyCH4V | TGCA | 1 cut(s) | 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 386, 447 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 155, 612 |
| Hsp92II | CATG | 3 cut(s) | 172, 439, 460 |
| HspAI | GCGC | 1 cut(s) | 448 |
| Kzo9I | GATC | 3 cut(s) | 258, 288, 604 |
| LpnPI | CCDG | 9 cut(s) | 66, 162, 255, 427, 436, 443, 501, 537, 586 |
| Lsp1109I | GCAGC | 3 cut(s) | 52, 457, 524 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeIII | GTNAC | 2 cut(s) | 3, 357 |
| MalI | GATC | 3 cut(s) | 260, 290, 606 |
| MboI | GATC | 3 cut(s) | 258, 288, 604 |
| MboII | GAAGA | 4 cut(s) | 201, 233, 640, 659 |
| MfeI | CAATTG | 2 cut(s) | 104, 253 |
| MhlI | GDGCHC | 1 cut(s) | 352 |
| MluCI | AATT | 9 cut(s) | 81, 104, 118, 209, 253, 292, 332, 539, 654 |
| MlyI | GAGTC | 1 cut(s) | 20 |
| MmeI | TCCRAC | 2 cut(s) | 37, 73 |
| MnlI | CCTC | 7 cut(s) | 150, 172, 258, 515, 604, 613, 621 |
| MseI | TTAA | 2 cut(s) | 173, 667 |
| MspA1I | CMGCKG | 1 cut(s) | 329 |
| MunI | CAATTG | 2 cut(s) | 104, 253 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 386, 447 |
| NdeII | GATC | 3 cut(s) | 258, 288, 604 |
| NlaIII | CATG | 3 cut(s) | 172, 439, 460 |
| NlaIV | GGNNCC | 1 cut(s) | 269 |
| NmuCI | GTSAC | 1 cut(s) | 3 |
| NspI | RCATGY | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PfeI | GAWTC | 2 cut(s) | 415, 533 |
| PkrI | GCNGC | 3 cut(s) | 67, 447, 514 |
| PleI | GAGTC | 1 cut(s) | 20 |
| PpsI | GAGTC | 1 cut(s) | 20 |
| PscI | ACATGT | 1 cut(s) | 168 |
| Psp124BI | GAGCTC | 1 cut(s) | 352 |
| PspFI | CCCAGC | 1 cut(s) | 241 |
| PspN4I | GGNNCC | 1 cut(s) | 269 |
| PspPI | GGNCC | 2 cut(s) | 159, 268 |
| RsaI | GTAC | 1 cut(s) | 455 |
| RsaNI | GTAC | 1 cut(s) | 454 |
| SacI | GAGCTC | 1 cut(s) | 352 |
| SaqAI | TTAA | 2 cut(s) | 173, 667 |
| SatI | GCNGC | 3 cut(s) | 66, 446, 513 |
| Sau3AI | GATC | 3 cut(s) | 258, 288, 604 |
| Sau96I | GGNCC | 2 cut(s) | 159, 268 |
| SchI | GAGTC | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 352 |
| SfcI | CTRYAG | 1 cut(s) | 87 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| Sse9I | AATT | 9 cut(s) | 81, 104, 118, 209, 253, 292, 332, 539, 654 |
| SsiI | CCGC | 1 cut(s) | 329 |
| SspMI | CTAG | 1 cut(s) | 476 |
| SstI | GAGCTC | 1 cut(s) | 352 |
| TaaI | ACNGT | 2 cut(s) | 91, 129 |
| TaqI | TCGA | 2 cut(s) | 507, 639 |
| TasI | AATT | 9 cut(s) | 81, 104, 118, 209, 253, 292, 332, 539, 654 |
| TfiI | GAWTC | 2 cut(s) | 415, 533 |
| Tru1I | TTAA | 2 cut(s) | 173, 667 |
| Tru9I | TTAA | 2 cut(s) | 173, 667 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseFI | GTSAC | 1 cut(s) | 3 |
| TseI | GCWGC | 3 cut(s) | 65, 445, 512 |
| Tsp45I | GTSAC | 1 cut(s) | 3 |
| TspDTI | ATGAA | 1 cut(s) | 133 |
| TspRI | CASTG | 1 cut(s) | 203 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 598 |
| XapI | RAATTY | 3 cut(s) | 81, 332, 539 |
| XceI | RCATGY | 1 cut(s) | 172 |
| XmiI | GTMKAC | 1 cut(s) | 400 |
| XspI | CTAG | 1 cut(s) | 476 |