ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 71 - 228 | 1.7e-22 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 560 |
| AccB1I | GGYRCC | 1 cut(s) | 257 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 254 |
| AccII | CGCG | 1 cut(s) | 47 |
| AciI | CCGC | 1 cut(s) | 722 |
| AclWI | GGATC | 3 cut(s) | 228, 241, 447 |
| AcuI | CTGAAG | 2 cut(s) | 348, 476 |
| AcvI | CACGTG | 1 cut(s) | 424 |
| AdeI | CACNNNGTG | 1 cut(s) | 254 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 254 |
| AflII | CTTAAG | 1 cut(s) | 434 |
| AgsI | TTSAA | 4 cut(s) | 129, 392, 618, 685 |
| AjiI | CACGTC | 1 cut(s) | 347 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AluBI | AGCT | 7 cut(s) | 66, 241, 266, 321, 374, 419, 536 |
| AluI | AGCT | 7 cut(s) | 66, 241, 266, 321, 374, 419, 536 |
| Alw21I | GWGCWC | 1 cut(s) | 376 |
| AlwI | GGATC | 3 cut(s) | 228, 241, 447 |
| AoxI | GGCC | 2 cut(s) | 394, 523 |
| ApeKI | GCWGC | 5 cut(s) | 413, 416, 533, 646, 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 182 |
| AspS9I | GGNCC | 3 cut(s) | 289, 523, 553 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AvaII | GGWCC | 2 cut(s) | 289, 553 |
| BanI | GGYRCC | 1 cut(s) | 257 |
| BanII | GRGCYC | 1 cut(s) | 376 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 321, 353 |
| BbrPI | CACGTG | 1 cut(s) | 424 |
| BbsI | GAAGAC | 1 cut(s) | 336 |
| Bbv12I | GWGCWC | 1 cut(s) | 376 |
| BbvCI | CCTCAGC | 1 cut(s) | 633 |
| BbvI | GCAGC | 5 cut(s) | 425, 428, 545, 658, 706 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 75, 109 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BclI | TGATCA | 1 cut(s) | 309 |
| BfmI | CTRYAG | 1 cut(s) | 671 |
| BfrI | CTTAAG | 1 cut(s) | 434 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 643 |
| BisI | GCNGC | 5 cut(s) | 414, 417, 534, 647, 720 |
| BlsI | GCNGC | 5 cut(s) | 415, 418, 535, 648, 721 |
| Bme1390I | CCNGG | 1 cut(s) | 302 |
| Bme18I | GGWCC | 2 cut(s) | 289, 553 |
| BmgBI | CACGTC | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 3 cut(s) | 289, 523, 553 |
| BmiI | GGNNCC | 1 cut(s) | 259 |
| BmrFI | CCNGG | 1 cut(s) | 302 |
| BmsI | GCATC | 1 cut(s) | 347 |
| BpiI | GAAGAC | 1 cut(s) | 336 |
| Bpu10I | CCTNAGC | 1 cut(s) | 633 |
| BsaAI | YACGTR | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 1 cut(s) | 301 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 254 |
| Bse1I | ACTGG | 2 cut(s) | 140, 292 |
| Bse3DI | GCAATG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 301 |
| BseGI | GGATG | 1 cut(s) | 362 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BseMI | GCAATG | 1 cut(s) | 93 |
| BseMII | CTCAG | 2 cut(s) | 122, 647 |
| BseNI | ACTGG | 2 cut(s) | 140, 292 |
| BseRI | GAGGAG | 1 cut(s) | 105 |
| BseXI | GCAGC | 5 cut(s) | 425, 428, 545, 658, 706 |
| BseYI | CCCAGC | 1 cut(s) | 536 |
| BsgI | GTGCAG | 1 cut(s) | 369 |
| Bsh1236I | CGCG | 1 cut(s) | 47 |
| BshFI | GGCC | 2 cut(s) | 396, 525 |
| BshNI | GGYRCC | 1 cut(s) | 257 |
| BsiHKAI | GWGCWC | 1 cut(s) | 376 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BsnI | GGCC | 2 cut(s) | 396, 525 |
| Bsp1286I | GDGCHC | 1 cut(s) | 376 |
| Bsp143I | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| BspACI | CCGC | 1 cut(s) | 722 |
| BspANI | GGCC | 2 cut(s) | 396, 525 |
| BspCNI | CTCAG | 2 cut(s) | 121, 646 |
| BspFNI | CGCG | 1 cut(s) | 47 |
| BspLI | GGNNCC | 1 cut(s) | 259 |
| BspPI | GGATC | 3 cut(s) | 228, 241, 447 |
| BspQI | GCTCTTC | 1 cut(s) | 364 |
| BspT107I | GGYRCC | 1 cut(s) | 257 |
| BspTI | CTTAAG | 1 cut(s) | 434 |
| BsrDI | GCAATG | 1 cut(s) | 93 |
| BsrI | ACTGG | 2 cut(s) | 140, 292 |
| BssECI | CCNNGG | 1 cut(s) | 301 |
| BssMI | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| Bst4CI | ACNGT | 2 cut(s) | 557, 762 |
| Bst6I | CTCTTC | 2 cut(s) | 364, 597 |
| BstAFI | CTTAAG | 1 cut(s) | 434 |
| BstBAI | YACGTR | 1 cut(s) | 424 |
| BstDEI | CTNAG | 5 cut(s) | 108, 282, 578, 633, 641 |
| BstF5I | GGATG | 1 cut(s) | 362 |
| BstFNI | CGCG | 1 cut(s) | 47 |
| BstKTI | GATC | 6 cut(s) | 83, 223, 236, 312, 442, 717 |
| BstMBI | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 410, 643 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstNSI | RCATGY | 1 cut(s) | 487 |
| BstSCI | CCNGG | 1 cut(s) | 300 |
| BstSFI | CTRYAG | 1 cut(s) | 671 |
| BstUI | CGCG | 1 cut(s) | 47 |
| BstV1I | GCAGC | 5 cut(s) | 425, 428, 545, 658, 706 |
| BstV2I | GAAGAC | 1 cut(s) | 336 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 536 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BsuRI | GGCC | 2 cut(s) | 396, 525 |
| BtgZI | GCGATG | 1 cut(s) | 62 |
| BtrI | CACGTC | 1 cut(s) | 347 |
| BtsCI | GGATG | 1 cut(s) | 362 |
| BtsI | GCAGTG | 1 cut(s) | 665 |
| BtsIMutI | CAGTG | 1 cut(s) | 665 |
| Cfr13I | GGNCC | 3 cut(s) | 289, 523, 553 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 5 cut(s) | 136, 161, 209, 484, 530 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 5 cut(s) | 108, 282, 578, 633, 641 |
| DpnI | GATC | 6 cut(s) | 82, 222, 235, 311, 441, 716 |
| DpnII | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| DraIII | CACNNNGTG | 1 cut(s) | 254 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 560 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 560 |
| Eam1104I | CTCTTC | 2 cut(s) | 364, 597 |
| EarI | CTCTTC | 2 cut(s) | 364, 597 |
| Ecl136II | GAGCTC | 1 cut(s) | 374 |
| Eco147I | AGGCCT | 1 cut(s) | 396 |
| Eco24I | GRGCYC | 1 cut(s) | 376 |
| Eco47I | GGWCC | 2 cut(s) | 289, 553 |
| Eco53kI | GAGCTC | 1 cut(s) | 374 |
| Eco57I | CTGAAG | 2 cut(s) | 348, 476 |
| Eco72I | CACGTG | 1 cut(s) | 424 |
| EcoICRI | GAGCTC | 1 cut(s) | 374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 523 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoT22I | ATGCAT | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 376 |
| FaeI | CATG | 5 cut(s) | 139, 164, 212, 487, 533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 594, 626 |
| FatI | CATG | 5 cut(s) | 135, 160, 208, 483, 529 |
| FbaI | TGATCA | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 5 cut(s) | 414, 417, 534, 647, 720 |
| FokI | GGATG | 1 cut(s) | 369 |
| FriOI | GRGCYC | 1 cut(s) | 376 |
| Fsp4HI | GCNGC | 5 cut(s) | 414, 417, 534, 647, 720 |
| GluI | GCNGC | 5 cut(s) | 414, 417, 534, 647, 720 |
| GsaI | CCCAGC | 1 cut(s) | 540 |
| HaeIII | GGCC | 2 cut(s) | 396, 525 |
| Hin1II | CATG | 5 cut(s) | 139, 164, 212, 487, 533 |
| HindIII | AAGCTT | 3 cut(s) | 64, 264, 319 |
| HinfI | GANTC | 1 cut(s) | 625 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 1 cut(s) | 248 |
| Hpy188I | TCNGA | 6 cut(s) | 238, 328, 344, 456, 595, 691 |
| Hpy188III | TCNNGA | 3 cut(s) | 622, 700, 712 |
| Hpy8I | GTNNAC | 1 cut(s) | 248 |
| Hpy99I | CGWCG | 1 cut(s) | 348 |
| HpyAV | CCTTC | 6 cut(s) | 35, 193, 224, 280, 386, 600 |
| HpyCH4III | ACNGT | 2 cut(s) | 557, 762 |
| HpyCH4IV | ACGT | 3 cut(s) | 346, 423, 430 |
| HpyCH4V | TGCA | 3 cut(s) | 350, 487, 533 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 410, 643 |
| HpyF3I | CTNAG | 5 cut(s) | 108, 282, 578, 633, 641 |
| HpySE526I | ACGT | 3 cut(s) | 346, 423, 430 |
| Hsp92II | CATG | 5 cut(s) | 139, 164, 212, 487, 533 |
| Ksp22I | TGATCA | 1 cut(s) | 309 |
| Kzo9I | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| LguI | GCTCTTC | 1 cut(s) | 364 |
| LpnPI | CCDG | 7 cut(s) | 16, 153, 287, 305, 314, 522, 607 |
| Lsp1109I | GCAGC | 5 cut(s) | 425, 428, 545, 658, 706 |
| LweI | GCATC | 1 cut(s) | 347 |
| MaeII | ACGT | 3 cut(s) | 346, 423, 430 |
| MaeIII | GTNAC | 6 cut(s) | 294, 606, 663, 730, 756, 762 |
| MalI | GATC | 6 cut(s) | 82, 222, 235, 311, 441, 716 |
| MboI | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| MboII | GAAGA | 4 cut(s) | 341, 381, 469, 614 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 1 cut(s) | 376 |
| MluCI | AATT | 2 cut(s) | 202, 747 |
| MmeI | TCCRAC | 1 cut(s) | 367 |
| Mph1103I | ATGCAT | 1 cut(s) | 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 182 |
| MseI | TTAA | 1 cut(s) | 435 |
| MspA1I | CMGCKG | 1 cut(s) | 536 |
| MspCI | CTTAAG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 302 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| MvnI | CGCG | 1 cut(s) | 47 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 410, 643 |
| NdeII | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| NlaIII | CATG | 5 cut(s) | 139, 164, 212, 487, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 663 |
| NsiI | ATGCAT | 1 cut(s) | 489 |
| NspI | RCATGY | 1 cut(s) | 487 |
| PceI | AGGCCT | 1 cut(s) | 396 |
| PciSI | GCTCTTC | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 625 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 254 |
| PkrI | GCNGC | 5 cut(s) | 415, 418, 535, 648, 721 |
| PmaCI | CACGTG | 1 cut(s) | 424 |
| PmlI | CACGTG | 1 cut(s) | 424 |
| Ppu21I | YACGTR | 1 cut(s) | 424 |
| Psp124BI | GAGCTC | 1 cut(s) | 376 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspCI | CACGTG | 1 cut(s) | 424 |
| PspFI | CCCAGC | 1 cut(s) | 536 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 1 cut(s) | 259 |
| PspPI | GGNCC | 3 cut(s) | 289, 523, 553 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| PvuII | CAGCTG | 1 cut(s) | 536 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SacI | GAGCTC | 1 cut(s) | 376 |
| SapI | GCTCTTC | 1 cut(s) | 364 |
| SaqAI | TTAA | 1 cut(s) | 435 |
| SatI | GCNGC | 5 cut(s) | 414, 417, 534, 647, 720 |
| Sau3AI | GATC | 6 cut(s) | 80, 220, 233, 309, 439, 714 |
| Sau96I | GGNCC | 3 cut(s) | 289, 523, 553 |
| ScrFI | CCNGG | 1 cut(s) | 302 |
| SduI | GDGCHC | 1 cut(s) | 376 |
| SfaNI | GCATC | 1 cut(s) | 347 |
| SfcI | CTRYAG | 1 cut(s) | 671 |
| SinI | GGWCC | 2 cut(s) | 289, 553 |
| SmlI | CTYRAG | 1 cut(s) | 434 |
| SmoI | CTYRAG | 1 cut(s) | 434 |
| Sse9I | AATT | 2 cut(s) | 202, 747 |
| SseBI | AGGCCT | 1 cut(s) | 396 |
| SsiI | CCGC | 1 cut(s) | 722 |
| SstI | GAGCTC | 1 cut(s) | 376 |
| StuI | AGGCCT | 1 cut(s) | 396 |
| StyD4I | CCNGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 2 cut(s) | 557, 762 |
| TaiI | ACGT | 3 cut(s) | 349, 426, 433 |
| TaqI | TCGA | 2 cut(s) | 447, 628 |
| TasI | AATT | 2 cut(s) | 202, 747 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TfiI | GAWTC | 1 cut(s) | 625 |
| Tru1I | TTAA | 1 cut(s) | 435 |
| Tru9I | TTAA | 1 cut(s) | 435 |
| TscAI | CASTG | 1 cut(s) | 672 |
| TseFI | GTSAC | 1 cut(s) | 663 |
| TseI | GCWGC | 5 cut(s) | 413, 416, 533, 646, 719 |
| Tsp45I | GTSAC | 1 cut(s) | 663 |
| TspDTI | ATGAA | 4 cut(s) | 175, 330, 476, 615 |
| TspRI | CASTG | 1 cut(s) | 672 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 254 |
| Vha464I | CTTAAG | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 553 |
| XceI | RCATGY | 1 cut(s) | 487 |
| XmnI | GAANNNNTTC | 1 cut(s) | 182 |
| Zsp2I | ATGCAT | 1 cut(s) | 489 |