gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 72 - 212 | 9.5e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 636 |
| AccI | GTMKAC | 1 cut(s) | 625 |
| AccII | CGCG | 1 cut(s) | 729 |
| AccIII | TCCGGA | 1 cut(s) | 580 |
| AciI | CCGC | 1 cut(s) | 729 |
| AclWI | GGATC | 3 cut(s) | 29, 42, 466 |
| AcuI | CTGAAG | 2 cut(s) | 404, 630 |
| AfaI | GTAC | 1 cut(s) | 656 |
| AflIII | ACRYGT | 1 cut(s) | 174 |
| AgsI | TTSAA | 2 cut(s) | 181, 191 |
| AluBI | AGCT | 9 cut(s) | 24, 97, 250, 305, 361, 445, 545, 560, 589 |
| AluI | AGCT | 9 cut(s) | 24, 97, 250, 305, 361, 445, 545, 560, 589 |
| Alw21I | GWGCWC | 1 cut(s) | 307 |
| Alw26I | GTCTC | 1 cut(s) | 543 |
| AlwI | GGATC | 3 cut(s) | 29, 42, 466 |
| Ama87I | CYCGRG | 1 cut(s) | 300 |
| Aor13HI | TCCGGA | 1 cut(s) | 580 |
| AoxI | GGCC | 1 cut(s) | 264 |
| ApeKI | GCWGC | 5 cut(s) | 89, 202, 281, 452, 589 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 464, 496 |
| AsuHPI | GGTGA | 1 cut(s) | 488 |
| AvaI | CYCGRG | 1 cut(s) | 300 |
| BamHI | GGATCC | 1 cut(s) | 34 |
| BanII | GRGCYC | 1 cut(s) | 307 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| Bbv12I | GWGCWC | 1 cut(s) | 307 |
| BbvI | GCAGC | 5 cut(s) | 76, 214, 293, 439, 576 |
| BceAI | ACGGC | 1 cut(s) | 606 |
| BcoDI | GTCTC | 1 cut(s) | 543 |
| BfaI | CTAG | 1 cut(s) | 618 |
| BisI | GCNGC | 5 cut(s) | 90, 203, 282, 453, 590 |
| BlpI | GCTNAGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 5 cut(s) | 91, 204, 283, 454, 591 |
| BmeT110I | CYCGRG | 1 cut(s) | 300 |
| BmiI | GGNNCC | 2 cut(s) | 36, 153 |
| BmsI | GCATC | 1 cut(s) | 553 |
| BoxI | GACNNNNGTC | 1 cut(s) | 508 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| BpmI | CTGGAG | 2 cut(s) | 567, 576 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 1 cut(s) | 431 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 2 cut(s) | 463, 580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 324, 354 |
| Bse1I | ACTGG | 1 cut(s) | 559 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseAI | TCCGGA | 1 cut(s) | 580 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseMII | CTCAG | 2 cut(s) | 48, 353 |
| BseNI | ACTGG | 1 cut(s) | 559 |
| BseRI | GAGGAG | 1 cut(s) | 599 |
| BseXI | GCAGC | 5 cut(s) | 76, 214, 293, 439, 576 |
| BseYI | CCCAGC | 1 cut(s) | 93 |
| Bsh1236I | CGCG | 1 cut(s) | 729 |
| BshFI | GGCC | 1 cut(s) | 266 |
| BsiHKAI | GWGCWC | 1 cut(s) | 307 |
| BsiHKCI | CYCGRG | 1 cut(s) | 300 |
| BsiSI | CCGG | 3 cut(s) | 456, 464, 581 |
| BsmAI | GTCTC | 1 cut(s) | 543 |
| BsnI | GGCC | 1 cut(s) | 266 |
| BsoBI | CYCGRG | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 1 cut(s) | 307 |
| Bsp13I | TCCGGA | 1 cut(s) | 580 |
| Bsp143I | GATC | 4 cut(s) | 34, 39, 458, 537 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 362 |
| BspACI | CCGC | 1 cut(s) | 729 |
| BspANI | GGCC | 1 cut(s) | 266 |
| BspCNI | CTCAG | 2 cut(s) | 49, 354 |
| BspEI | TCCGGA | 1 cut(s) | 580 |
| BspFNI | CGCG | 1 cut(s) | 729 |
| BspLI | GGNNCC | 2 cut(s) | 36, 153 |
| BspPI | GGATC | 3 cut(s) | 29, 42, 466 |
| BspQI | GCTCTTC | 1 cut(s) | 318 |
| BsrI | ACTGG | 1 cut(s) | 559 |
| BssMI | GATC | 4 cut(s) | 34, 39, 458, 537 |
| Bst4CI | ACNGT | 4 cut(s) | 135, 476, 659, 713 |
| Bst6I | CTCTTC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 2 cut(s) | 57, 362 |
| BstFNI | CGCG | 1 cut(s) | 729 |
| BstKTI | GATC | 4 cut(s) | 37, 42, 461, 540 |
| BstMAI | GTCTC | 1 cut(s) | 543 |
| BstMBI | GATC | 4 cut(s) | 34, 39, 458, 537 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 287 |
| BstNSI | RCATGY | 1 cut(s) | 178 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 508 |
| BstUI | CGCG | 1 cut(s) | 729 |
| BstV1I | GCAGC | 5 cut(s) | 76, 214, 293, 439, 576 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BstX2I | RGATCY | 2 cut(s) | 34, 458 |
| BstYI | RGATCY | 2 cut(s) | 34, 458 |
| BsuRI | GGCC | 1 cut(s) | 266 |
| BtsIMutI | CAGTG | 1 cut(s) | 552 |
| CseI | GACGC | 1 cut(s) | 735 |
| Csp6I | GTAC | 1 cut(s) | 655 |
| CviAII | CATG | 7 cut(s) | 43, 83, 170, 175, 184, 268, 593 |
| CviQI | GTAC | 1 cut(s) | 655 |
| DdeI | CTNAG | 2 cut(s) | 57, 362 |
| DpnI | GATC | 4 cut(s) | 36, 41, 460, 539 |
| DpnII | GATC | 4 cut(s) | 34, 39, 458, 537 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 636 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 636 |
| Eam1104I | CTCTTC | 1 cut(s) | 318 |
| EarI | CTCTTC | 1 cut(s) | 318 |
| Ecl136II | GAGCTC | 1 cut(s) | 305 |
| Eco24I | GRGCYC | 1 cut(s) | 307 |
| Eco53kI | GAGCTC | 1 cut(s) | 305 |
| Eco57I | CTGAAG | 2 cut(s) | 404, 630 |
| Eco88I | CYCGRG | 1 cut(s) | 300 |
| EcoICRI | GAGCTC | 1 cut(s) | 305 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 307 |
| FaeI | CATG | 7 cut(s) | 46, 86, 173, 178, 187, 271, 596 |
| FatI | CATG | 7 cut(s) | 42, 82, 169, 174, 183, 267, 592 |
| FblI | GTMKAC | 1 cut(s) | 625 |
| Fnu4HI | GCNGC | 5 cut(s) | 90, 203, 282, 453, 590 |
| FriOI | GRGCYC | 1 cut(s) | 307 |
| Fsp4HI | GCNGC | 5 cut(s) | 90, 203, 282, 453, 590 |
| FspBI | CTAG | 1 cut(s) | 618 |
| GluI | GCNGC | 5 cut(s) | 90, 203, 282, 453, 590 |
| GsaI | CCCAGC | 1 cut(s) | 97 |
| GsuI | CTGGAG | 2 cut(s) | 567, 576 |
| HaeIII | GGCC | 1 cut(s) | 266 |
| HapII | CCGG | 3 cut(s) | 456, 464, 581 |
| HgaI | GACGC | 1 cut(s) | 735 |
| Hin1II | CATG | 7 cut(s) | 46, 86, 173, 178, 187, 271, 596 |
| HinfI | GANTC | 1 cut(s) | 577 |
| HpaII | CCGG | 3 cut(s) | 456, 464, 581 |
| HphI | GGTGA | 1 cut(s) | 488 |
| Hpy166II | GTNNAC | 1 cut(s) | 626 |
| Hpy188I | TCNGA | 8 cut(s) | 39, 58, 262, 350, 384, 409, 514, 542 |
| Hpy188III | TCNNGA | 2 cut(s) | 300, 581 |
| Hpy8I | GTNNAC | 1 cut(s) | 626 |
| Hpy99I | CGWCG | 2 cut(s) | 34, 514 |
| HpyAV | CCTTC | 1 cut(s) | 387 |
| HpyCH4III | ACNGT | 4 cut(s) | 135, 476, 659, 713 |
| HpyCH4IV | ACGT | 1 cut(s) | 720 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 592 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 362 |
| HpySE526I | ACGT | 1 cut(s) | 720 |
| Hsp92II | CATG | 7 cut(s) | 46, 86, 173, 178, 187, 271, 596 |
| Kpn2I | TCCGGA | 1 cut(s) | 580 |
| Kzo9I | GATC | 4 cut(s) | 34, 39, 458, 537 |
| LguI | GCTCTTC | 1 cut(s) | 318 |
| LmnI | GCTCC | 2 cut(s) | 557, 586 |
| Lsp1109I | GCAGC | 5 cut(s) | 76, 214, 293, 439, 576 |
| LweI | GCATC | 1 cut(s) | 553 |
| MaeI | CTAG | 1 cut(s) | 618 |
| MaeII | ACGT | 1 cut(s) | 720 |
| MalI | GATC | 4 cut(s) | 36, 41, 460, 539 |
| MboI | GATC | 4 cut(s) | 34, 39, 458, 537 |
| MboII | GAAGA | 4 cut(s) | 131, 335, 397, 623 |
| MfeI | CAATTG | 1 cut(s) | 431 |
| MflI | RGATCY | 2 cut(s) | 34, 458 |
| MhlI | GDGCHC | 1 cut(s) | 307 |
| MluCI | AATT | 2 cut(s) | 71, 431 |
| MlyI | GAGTC | 1 cut(s) | 571 |
| MmeI | TCCRAC | 2 cut(s) | 300, 492 |
| MnlI | CCTC | 4 cut(s) | 90, 256, 383, 577 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 580 |
| MseI | TTAA | 4 cut(s) | 108, 314, 486, 642 |
| MspA1I | CMGCKG | 1 cut(s) | 361 |
| MspI | CCGG | 3 cut(s) | 456, 464, 581 |
| MunI | CAATTG | 1 cut(s) | 431 |
| MvnI | CGCG | 1 cut(s) | 729 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 287 |
| NdeII | GATC | 4 cut(s) | 34, 39, 458, 537 |
| NlaIII | CATG | 7 cut(s) | 46, 86, 173, 178, 187, 271, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 153 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 178 |
| PciI | ACATGT | 1 cut(s) | 174 |
| PciSI | GCTCTTC | 1 cut(s) | 318 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 35, 717 |
| PkrI | GCNGC | 5 cut(s) | 91, 204, 283, 454, 591 |
| PleI | GAGTC | 1 cut(s) | 571 |
| PpsI | GAGTC | 1 cut(s) | 571 |
| PscI | ACATGT | 1 cut(s) | 174 |
| PshAI | GACNNNNGTC | 1 cut(s) | 508 |
| Psp124BI | GAGCTC | 1 cut(s) | 307 |
| PspFI | CCCAGC | 1 cut(s) | 93 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 153 |
| PsuI | RGATCY | 2 cut(s) | 34, 458 |
| PvuII | CAGCTG | 1 cut(s) | 361 |
| RsaI | GTAC | 1 cut(s) | 656 |
| RsaNI | GTAC | 1 cut(s) | 655 |
| SacI | GAGCTC | 1 cut(s) | 307 |
| SapI | GCTCTTC | 1 cut(s) | 318 |
| SaqAI | TTAA | 4 cut(s) | 108, 314, 486, 642 |
| SatI | GCNGC | 5 cut(s) | 90, 203, 282, 453, 590 |
| Sau3AI | GATC | 4 cut(s) | 34, 39, 458, 537 |
| SchI | GAGTC | 1 cut(s) | 571 |
| SduI | GDGCHC | 1 cut(s) | 307 |
| SfaNI | GCATC | 1 cut(s) | 553 |
| SmlI | CTYRAG | 1 cut(s) | 446 |
| SmoI | CTYRAG | 1 cut(s) | 446 |
| Sse9I | AATT | 2 cut(s) | 71, 431 |
| SsiI | CCGC | 1 cut(s) | 729 |
| SspI | AATATT | 1 cut(s) | 14 |
| SspMI | CTAG | 1 cut(s) | 618 |
| SstI | GAGCTC | 1 cut(s) | 307 |
| TaaI | ACNGT | 4 cut(s) | 135, 476, 659, 713 |
| TaiI | ACGT | 1 cut(s) | 723 |
| TaqI | TCGA | 2 cut(s) | 29, 536 |
| TasI | AATT | 2 cut(s) | 71, 431 |
| Tru1I | TTAA | 4 cut(s) | 108, 314, 486, 642 |
| Tru9I | TTAA | 4 cut(s) | 108, 314, 486, 642 |
| TscAI | CASTG | 1 cut(s) | 559 |
| TseI | GCWGC | 5 cut(s) | 89, 202, 281, 452, 589 |
| TspDTI | ATGAA | 2 cut(s) | 232, 654 |
| TspGWI | ACGGA | 4 cut(s) | 47, 498, 516, 661 |
| TspRI | CASTG | 1 cut(s) | 559 |
| XceI | RCATGY | 1 cut(s) | 178 |
| XmiI | GTMKAC | 1 cut(s) | 625 |
| XspI | CTAG | 1 cut(s) | 618 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |