gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 256, 261 |
| AcoI | YGGCCR | 1 cut(s) | 233 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AcuI | CTGAAG | 1 cut(s) | 27 |
| AfaI | GTAC | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflIII | ACRYGT | 1 cut(s) | 228 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 92, 124 |
| AluBI | AGCT | 3 cut(s) | 163, 252, 363 |
| AluI | AGCT | 3 cut(s) | 163, 252, 363 |
| AoxI | GGCC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 163 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| AspLEI | GCGC | 1 cut(s) | 263 |
| AspS9I | GGNCC | 2 cut(s) | 112, 184 |
| AsuC2I | CCSGG | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| AvaII | GGWCC | 2 cut(s) | 112, 184 |
| BalI | TGGCCA | 1 cut(s) | 235 |
| BbsI | GAAGAC | 1 cut(s) | 193 |
| BbvI | GCAGC | 1 cut(s) | 150 |
| BcnI | CCSGG | 1 cut(s) | 116 |
| BfaI | CTAG | 2 cut(s) | 315, 344 |
| BisI | GCNGC | 1 cut(s) | 164 |
| BlsI | GCNGC | 1 cut(s) | 165 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| Bme18I | GGWCC | 2 cut(s) | 112, 184 |
| BmgT120I | GGNCC | 2 cut(s) | 112, 184 |
| BmiI | GGNNCC | 3 cut(s) | 114, 185, 341 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| BmsI | GCATC | 1 cut(s) | 20 |
| BpiI | GAAGAC | 1 cut(s) | 193 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| BpuMI | CCSGG | 1 cut(s) | 116 |
| BsaWI | WCCGGW | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 6 |
| BseRI | GAGGAG | 1 cut(s) | 193 |
| BseXI | GCAGC | 1 cut(s) | 150 |
| Bsh1236I | CGCG | 2 cut(s) | 256, 261 |
| BshFI | GGCC | 1 cut(s) | 235 |
| BsiSI | CCGG | 2 cut(s) | 116, 244 |
| BslFI | GGGAC | 2 cut(s) | 98, 197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmFI | GGGAC | 2 cut(s) | 98, 197 |
| BsnI | GGCC | 1 cut(s) | 235 |
| Bsp68I | TCGCGA | 1 cut(s) | 256 |
| BspANI | GGCC | 1 cut(s) | 235 |
| BspCNI | CTCAG | 1 cut(s) | 7 |
| BspFNI | CGCG | 2 cut(s) | 256, 261 |
| BspLI | GGNNCC | 3 cut(s) | 114, 185, 341 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 143 |
| BstC8I | GCNNGC | 2 cut(s) | 55, 254 |
| BstDEI | CTNAG | 1 cut(s) | 15 |
| BstFNI | CGCG | 2 cut(s) | 256, 261 |
| BstHHI | GCGC | 1 cut(s) | 263 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 258 |
| BstNSI | RCATGY | 2 cut(s) | 195, 232 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| BstUI | CGCG | 2 cut(s) | 256, 261 |
| BstV1I | GCAGC | 1 cut(s) | 150 |
| BstV2I | GAAGAC | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 235 |
| BtuMI | TCGCGA | 1 cut(s) | 256 |
| Cac8I | GCNNGC | 2 cut(s) | 55, 254 |
| CfoI | GCGC | 1 cut(s) | 263 |
| Cfr13I | GGNCC | 2 cut(s) | 112, 184 |
| CseI | GACGC | 2 cut(s) | 155, 267 |
| Csp6I | GTAC | 1 cut(s) | 149 |
| CviAII | CATG | 4 cut(s) | 59, 152, 192, 229 |
| CviJI | RGCY | 7 cut(s) | 5, 57, 163, 235, 252, 340, 363 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 57, 163, 235, 252, 340, 363 |
| CviQI | GTAC | 1 cut(s) | 149 |
| DdeI | CTNAG | 1 cut(s) | 15 |
| EaeI | YGGCCR | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 143 |
| EarI | CTCTTC | 2 cut(s) | 48, 143 |
| Eco47I | GGWCC | 2 cut(s) | 112, 184 |
| Eco57I | CTGAAG | 1 cut(s) | 27 |
| EcoO109I | RGGNCCY | 1 cut(s) | 184 |
| FaeI | CATG | 4 cut(s) | 62, 155, 195, 232 |
| FaiI | YATR | 8 cut(s) | 48, 60, 132, 153, 193, 210, 230, 272 |
| FaqI | GGGAC | 2 cut(s) | 98, 197 |
| FatI | CATG | 4 cut(s) | 58, 151, 191, 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 164 |
| FspBI | CTAG | 2 cut(s) | 315, 344 |
| GlaI | GCGC | 1 cut(s) | 262 |
| GluI | GCNGC | 1 cut(s) | 164 |
| HaeIII | GGCC | 1 cut(s) | 235 |
| HapII | CCGG | 2 cut(s) | 116, 244 |
| HgaI | GACGC | 2 cut(s) | 155, 267 |
| HhaI | GCGC | 1 cut(s) | 263 |
| Hin1II | CATG | 4 cut(s) | 62, 155, 195, 232 |
| Hin6I | GCGC | 1 cut(s) | 261 |
| HinP1I | GCGC | 1 cut(s) | 261 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HinfI | GANTC | 2 cut(s) | 198, 334 |
| HpaII | CCGG | 2 cut(s) | 116, 244 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 2 cut(s) | 37, 170 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 106, 223 |
| Hpy188III | TCNNGA | 3 cut(s) | 97, 255, 331 |
| Hpy8I | GTNNAC | 2 cut(s) | 37, 170 |
| Hpy99I | CGWCG | 1 cut(s) | 261 |
| HpyCH4V | TGCA | 4 cut(s) | 53, 195, 212, 302 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 258 |
| HpyF3I | CTNAG | 1 cut(s) | 15 |
| Hsp92II | CATG | 4 cut(s) | 62, 155, 195, 232 |
| HspAI | GCGC | 1 cut(s) | 261 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| LpnPI | CCDG | 5 cut(s) | 63, 82, 129, 257, 362 |
| Lsp1109I | GCAGC | 1 cut(s) | 150 |
| LweI | GCATC | 1 cut(s) | 20 |
| MaeI | CTAG | 2 cut(s) | 315, 344 |
| MboII | GAAGA | 5 cut(s) | 35, 130, 193, 302, 364 |
| MlsI | TGGCCA | 1 cut(s) | 235 |
| MluCI | AATT | 3 cut(s) | 107, 281, 293 |
| MluNI | TGGCCA | 1 cut(s) | 235 |
| MlyI | GAGTC | 2 cut(s) | 207, 328 |
| MnlI | CCTC | 7 cut(s) | 39, 51, 146, 171, 174, 217, 280 |
| Mox20I | TGGCCA | 1 cut(s) | 235 |
| MscI | TGGCCA | 1 cut(s) | 235 |
| MseI | TTAA | 1 cut(s) | 278 |
| Msp20I | TGGCCA | 1 cut(s) | 235 |
| MspI | CCGG | 2 cut(s) | 116, 244 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| MvnI | CGCG | 2 cut(s) | 256, 261 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 258 |
| NciI | CCSGG | 1 cut(s) | 116 |
| NlaIII | CATG | 4 cut(s) | 62, 155, 195, 232 |
| NlaIV | GGNNCC | 3 cut(s) | 114, 185, 341 |
| NmeAIII | GCCGAG | 1 cut(s) | 316 |
| NruI | TCGCGA | 1 cut(s) | 256 |
| NspI | RCATGY | 2 cut(s) | 195, 232 |
| PciI | ACATGT | 1 cut(s) | 228 |
| PkrI | GCNGC | 1 cut(s) | 165 |
| PleI | GAGTC | 2 cut(s) | 206, 328 |
| PpsI | GAGTC | 2 cut(s) | 206, 328 |
| PpuMI | RGGWCCY | 1 cut(s) | 184 |
| PscI | ACATGT | 1 cut(s) | 228 |
| Psp5II | RGGWCCY | 1 cut(s) | 184 |
| PspN4I | GGNNCC | 3 cut(s) | 114, 185, 341 |
| PspPI | GGNCC | 2 cut(s) | 112, 184 |
| PspPPI | RGGWCCY | 1 cut(s) | 184 |
| RruI | TCGCGA | 1 cut(s) | 256 |
| RsaI | GTAC | 1 cut(s) | 150 |
| RsaNI | GTAC | 1 cut(s) | 149 |
| SaqAI | TTAA | 1 cut(s) | 278 |
| SatI | GCNGC | 1 cut(s) | 164 |
| Sau96I | GGNCC | 2 cut(s) | 112, 184 |
| SchI | GAGTC | 2 cut(s) | 207, 328 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SetI | ASST | 9 cut(s) | 31, 138, 165, 189, 209, 254, 316, 351, 365 |
| SfaNI | GCATC | 1 cut(s) | 20 |
| SinI | GGWCC | 2 cut(s) | 112, 184 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 3 cut(s) | 107, 281, 293 |
| SspMI | CTAG | 2 cut(s) | 315, 344 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 322 |
| TaqII | GACCGA | 1 cut(s) | 55 |
| TasI | AATT | 3 cut(s) | 107, 281, 293 |
| Tru1I | TTAA | 1 cut(s) | 278 |
| Tru9I | TTAA | 1 cut(s) | 278 |
| TseI | GCWGC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 2 cut(s) | 112, 184 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XceI | RCATGY | 2 cut(s) | 195, 232 |
| XspI | CTAG | 2 cut(s) | 315, 344 |