ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 59 - 223 | 8.2e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 92, 95 |
| AclWI | GGATC | 5 cut(s) | 12, 296, 326, 453, 630 |
| AcsI | RAATTY | 3 cut(s) | 362, 557, 589 |
| AcuI | CTGAAG | 2 cut(s) | 264, 419 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 618 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 1 cut(s) | 327 |
| AjnI | CCWGG | 1 cut(s) | 459 |
| AluBI | AGCT | 5 cut(s) | 275, 380, 403, 439, 503 |
| AluI | AGCT | 5 cut(s) | 275, 380, 403, 439, 503 |
| Alw21I | GWGCWC | 1 cut(s) | 382 |
| AlwI | GGATC | 5 cut(s) | 12, 296, 326, 453, 630 |
| Ama87I | CYCGRG | 1 cut(s) | 642 |
| AoxI | GGCC | 2 cut(s) | 183, 626 |
| ApeKI | GCWGC | 3 cut(s) | 89, 403, 530 |
| ApoI | RAATTY | 3 cut(s) | 362, 557, 589 |
| AspLEI | GCGC | 1 cut(s) | 730 |
| AspS9I | GGNCC | 2 cut(s) | 183, 298 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 493 |
| AvaI | CYCGRG | 1 cut(s) | 642 |
| AvaII | GGWCC | 1 cut(s) | 298 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 2 cut(s) | 382, 636 |
| BauI | CACGAG | 1 cut(s) | 367 |
| Bbv12I | GWGCWC | 1 cut(s) | 382 |
| BbvI | GCAGC | 3 cut(s) | 76, 390, 542 |
| BccI | CCATC | 1 cut(s) | 623 |
| BceAI | ACGGC | 1 cut(s) | 616 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 519, 553 |
| BciT130I | CCWGG | 1 cut(s) | 461 |
| BciVI | GTATCC | 1 cut(s) | 344 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BfaI | CTAG | 2 cut(s) | 494, 524 |
| BfoI | RGCGCY | 1 cut(s) | 731 |
| BfuI | GTATCC | 1 cut(s) | 344 |
| BisI | GCNGC | 5 cut(s) | 90, 93, 96, 404, 531 |
| BlsI | GCNGC | 5 cut(s) | 91, 94, 97, 405, 532 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 461 |
| Bme18I | GGWCC | 1 cut(s) | 298 |
| BmeT110I | CYCGRG | 1 cut(s) | 642 |
| BmgT120I | GGNCC | 2 cut(s) | 183, 298 |
| BmiI | GGNNCC | 2 cut(s) | 6, 299 |
| BmrFI | CCNGG | 2 cut(s) | 72, 461 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 743, 775 |
| Bpu10I | CCTNAGC | 2 cut(s) | 630, 701 |
| BpuEI | CTTGAG | 1 cut(s) | 425 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 618 |
| BseBI | CCWGG | 1 cut(s) | 461 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseGI | GGATG | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 618 |
| BseMII | CTCAG | 4 cut(s) | 170, 621, 715, 774 |
| BseXI | GCAGC | 3 cut(s) | 76, 390, 542 |
| BseYI | CCCAGC | 1 cut(s) | 271 |
| BshFI | GGCC | 2 cut(s) | 185, 628 |
| BsiHKAI | GWGCWC | 1 cut(s) | 382 |
| BsiHKCI | CYCGRG | 1 cut(s) | 642 |
| BsiSI | CCGG | 2 cut(s) | 72, 81 |
| BslFI | GGGAC | 1 cut(s) | 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 618 |
| BsmFI | GGGAC | 1 cut(s) | 311 |
| BsnI | GGCC | 2 cut(s) | 185, 628 |
| BsoBI | CYCGRG | 1 cut(s) | 642 |
| Bsp1286I | GDGCHC | 2 cut(s) | 382, 636 |
| Bsp143I | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| BspACI | CCGC | 2 cut(s) | 92, 95 |
| BspANI | GGCC | 2 cut(s) | 185, 628 |
| BspCNI | CTCAG | 4 cut(s) | 171, 622, 714, 773 |
| BspLI | GGNNCC | 2 cut(s) | 6, 299 |
| BspPI | GGATC | 5 cut(s) | 12, 296, 326, 453, 630 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssMI | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| BssSI | CACGAG | 1 cut(s) | 367 |
| BssT1I | CCWWGG | 1 cut(s) | 135 |
| Bst2BI | CACGAG | 1 cut(s) | 367 |
| Bst2UI | CCWGG | 1 cut(s) | 461 |
| Bst4CI | ACNGT | 3 cut(s) | 153, 358, 481 |
| Bst6I | CTCTTC | 2 cut(s) | 208, 240 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 5 cut(s) | 179, 630, 668, 701, 760 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 616 |
| BstF5I | GGATG | 1 cut(s) | 168 |
| BstH2I | RGCGCY | 1 cut(s) | 731 |
| BstHHI | GCGC | 1 cut(s) | 730 |
| BstKTI | GATC | 7 cut(s) | 7, 291, 321, 448, 625, 735, 802 |
| BstMBI | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 86, 95, 416 |
| BstNI | CCWGG | 1 cut(s) | 461 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstSCI | CCNGG | 2 cut(s) | 70, 459 |
| BstV1I | GCAGC | 3 cut(s) | 76, 390, 542 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BsuI | GTATCC | 1 cut(s) | 344 |
| BsuRI | GGCC | 2 cut(s) | 185, 628 |
| BtsCI | GGATG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| CfoI | GCGC | 1 cut(s) | 730 |
| Cfr13I | GGNCC | 2 cut(s) | 183, 298 |
| CseI | GACGC | 1 cut(s) | 559 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviAII | CATG | 1 cut(s) | 193 |
| DdeI | CTNAG | 5 cut(s) | 179, 630, 668, 701, 760 |
| DpnI | GATC | 7 cut(s) | 6, 290, 320, 447, 624, 734, 801 |
| DpnII | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| Eam1104I | CTCTTC | 2 cut(s) | 208, 240 |
| EarI | CTCTTC | 2 cut(s) | 208, 240 |
| Ecl136II | GAGCTC | 1 cut(s) | 380 |
| Eco130I | CCWWGG | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 2 cut(s) | 382, 636 |
| Eco47I | GGWCC | 1 cut(s) | 298 |
| Eco53kI | GAGCTC | 1 cut(s) | 380 |
| Eco57I | CTGAAG | 2 cut(s) | 264, 419 |
| Eco88I | CYCGRG | 1 cut(s) | 642 |
| EcoICRI | GAGCTC | 1 cut(s) | 380 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 616 |
| EcoO109I | RGGNCCY | 1 cut(s) | 183 |
| EcoRI | GAATTC | 2 cut(s) | 362, 589 |
| EcoRII | CCWGG | 1 cut(s) | 459 |
| EcoT14I | CCWWGG | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 2 cut(s) | 382, 636 |
| ErhI | CCWWGG | 1 cut(s) | 135 |
| FaeI | CATG | 1 cut(s) | 196 |
| FaiI | YATR | 8 cut(s) | 119, 194, 279, 595, 597, 675, 698, 713 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 458, 490 |
| FaqI | GGGAC | 1 cut(s) | 311 |
| FatI | CATG | 1 cut(s) | 192 |
| FauNDI | CATATG | 1 cut(s) | 595 |
| Fnu4HI | GCNGC | 5 cut(s) | 90, 93, 96, 404, 531 |
| FokI | GGATG | 1 cut(s) | 155 |
| FriOI | GRGCYC | 2 cut(s) | 382, 636 |
| Fsp4HI | GCNGC | 5 cut(s) | 90, 93, 96, 404, 531 |
| FspBI | CTAG | 2 cut(s) | 494, 524 |
| GlaI | GCGC | 1 cut(s) | 729 |
| GluI | GCNGC | 5 cut(s) | 90, 93, 96, 404, 531 |
| GsaI | CCCAGC | 1 cut(s) | 275 |
| HaeII | RGCGCY | 1 cut(s) | 731 |
| HaeIII | GGCC | 2 cut(s) | 185, 628 |
| HapII | CCGG | 2 cut(s) | 72, 81 |
| HgaI | GACGC | 1 cut(s) | 559 |
| HhaI | GCGC | 1 cut(s) | 730 |
| Hin1II | CATG | 1 cut(s) | 196 |
| Hin6I | GCGC | 1 cut(s) | 728 |
| HinP1I | GCGC | 1 cut(s) | 728 |
| HinfI | GANTC | 2 cut(s) | 41, 551 |
| HpaII | CCGG | 2 cut(s) | 72, 81 |
| HphI | GGTGA | 1 cut(s) | 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 374 |
| Hpy188I | TCNGA | 6 cut(s) | 180, 190, 312, 350, 556, 588 |
| Hpy188III | TCNNGA | 4 cut(s) | 11, 292, 367, 644 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 374 |
| HpyAV | CCTTC | 3 cut(s) | 203, 254, 478 |
| HpyCH4III | ACNGT | 3 cut(s) | 153, 358, 481 |
| HpyCH4IV | ACGT | 1 cut(s) | 174 |
| HpyCH4V | TGCA | 2 cut(s) | 419, 655 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 86, 95, 416 |
| HpyF3I | CTNAG | 5 cut(s) | 179, 630, 668, 701, 760 |
| HpySE526I | ACGT | 1 cut(s) | 174 |
| Hsp92II | CATG | 1 cut(s) | 196 |
| HspAI | GCGC | 1 cut(s) | 728 |
| Kzo9I | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 390, 542 |
| MaeI | CTAG | 2 cut(s) | 494, 524 |
| MaeII | ACGT | 1 cut(s) | 174 |
| MaeIII | GTNAC | 4 cut(s) | 18, 387, 470, 637 |
| MalI | GATC | 7 cut(s) | 6, 290, 320, 447, 624, 734, 801 |
| MboI | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| MboII | GAAGA | 3 cut(s) | 102, 225, 257 |
| MfeI | CAATTG | 3 cut(s) | 128, 283, 650 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 2 cut(s) | 382, 636 |
| MluCI | AATT | 9 cut(s) | 128, 142, 233, 283, 322, 362, 557, 589, 650 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MnlI | CCTC | 8 cut(s) | 18, 39, 78, 174, 196, 288, 622, 690 |
| MseI | TTAA | 1 cut(s) | 197 |
| MspI | CCGG | 2 cut(s) | 72, 81 |
| MspR9I | CCNGG | 2 cut(s) | 72, 461 |
| MunI | CAATTG | 3 cut(s) | 128, 283, 650 |
| MvaI | CCWGG | 1 cut(s) | 461 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 86, 95, 416 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NdeI | CATATG | 1 cut(s) | 595 |
| NdeII | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| NlaIII | CATG | 1 cut(s) | 196 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 299 |
| NmuCI | GTSAC | 1 cut(s) | 18 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PaeR7I | CTCGAG | 1 cut(s) | 642 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PfeI | GAWTC | 1 cut(s) | 551 |
| PfoI | TCCNGGA | 1 cut(s) | 70 |
| PkrI | GCNGC | 5 cut(s) | 91, 94, 97, 405, 532 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PscI | ACATGT | 1 cut(s) | 192 |
| Psp124BI | GAGCTC | 1 cut(s) | 382 |
| Psp6I | CCWGG | 1 cut(s) | 459 |
| PspFI | CCCAGC | 1 cut(s) | 271 |
| PspGI | CCWGG | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 299 |
| PspPI | GGNCC | 2 cut(s) | 183, 298 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| SacI | GAGCTC | 1 cut(s) | 382 |
| SaqAI | TTAA | 1 cut(s) | 197 |
| SatI | GCNGC | 5 cut(s) | 90, 93, 96, 404, 531 |
| Sau3AI | GATC | 7 cut(s) | 4, 288, 318, 445, 622, 732, 799 |
| Sau96I | GGNCC | 2 cut(s) | 183, 298 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 2 cut(s) | 72, 461 |
| SduI | GDGCHC | 2 cut(s) | 382, 636 |
| Sfr274I | CTCGAG | 1 cut(s) | 642 |
| SinI | GGWCC | 1 cut(s) | 298 |
| SlaI | CTCGAG | 1 cut(s) | 642 |
| SmlI | CTYRAG | 3 cut(s) | 9, 440, 642 |
| SmoI | CTYRAG | 3 cut(s) | 9, 440, 642 |
| Sse9I | AATT | 9 cut(s) | 128, 142, 233, 283, 322, 362, 557, 589, 650 |
| SsiI | CCGC | 2 cut(s) | 92, 95 |
| SspMI | CTAG | 2 cut(s) | 494, 524 |
| SstI | GAGCTC | 1 cut(s) | 382 |
| StyD4I | CCNGG | 2 cut(s) | 70, 459 |
| StyI | CCWWGG | 1 cut(s) | 135 |
| TaaI | ACNGT | 3 cut(s) | 153, 358, 481 |
| TaiI | ACGT | 1 cut(s) | 177 |
| TaqI | TCGA | 1 cut(s) | 643 |
| TasI | AATT | 9 cut(s) | 128, 142, 233, 283, 322, 362, 557, 589, 650 |
| TauI | GCSGC | 2 cut(s) | 95, 98 |
| TfiI | GAWTC | 1 cut(s) | 551 |
| Tru1I | TTAA | 1 cut(s) | 197 |
| Tru9I | TTAA | 1 cut(s) | 197 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 1 cut(s) | 18 |
| TseI | GCWGC | 3 cut(s) | 89, 403, 530 |
| Tsp45I | GTSAC | 1 cut(s) | 18 |
| TspDTI | ATGAA | 2 cut(s) | 157, 582 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 298 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 616 |
| XapI | RAATTY | 3 cut(s) | 362, 557, 589 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XhoI | CTCGAG | 1 cut(s) | 642 |
| XspI | CTAG | 2 cut(s) | 494, 524 |